View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0113-INSERTION-2 (Length: 140)
Name: NF0113-INSERTION-2
Description: NF0113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0113-INSERTION-2 |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold1142 (1 HSPs) |
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| [»] scaffold0043 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 1e-60; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 27378078 - 27378211
Alignment:
| Q |
7 |
agaatataaatctgaaaataagttaagtgattgttataaagagaaaagatcaattaagttagaaacacgaaaattatgatgaataaattgtatctcttac |
106 |
Q |
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| T |
27378078 |
agaatataaatctgaaaatacattaagtgattgttataaagagaaaagatcaattaagttagaaacacgaaaattatgatgaataaattgtatctcttac |
27378177 |
T |
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| Q |
107 |
ttctctggctccttctacctctccctctgaatat |
140 |
Q |
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| T |
27378178 |
ttctctggcttcttctacctctccttctgaatat |
27378211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 7e-44
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 27348740 - 27348873
Alignment:
| Q |
7 |
agaatataaatctgaaaataagttaagtgattgttataaagagaaaagatcaattaagttagaaacacgaaaattatgatgaataaattgtatctcttac |
106 |
Q |
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| T |
27348740 |
agaatgtaaatctgaaaatacgttaagtgattgttataaagaggaaagatcaattaagttagaaatacgaaaattatcctgaataaattgtagctattac |
27348839 |
T |
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| Q |
107 |
ttctctggctccttctacctctccctctgaatat |
140 |
Q |
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|||| ||||| ||||||||||||||||| ||||| |
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| T |
27348840 |
ttctttggcttcttctacctctccctcttaatat |
27348873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 12147509 - 12147573
Alignment:
| Q |
7 |
agaatataaatctgaaaataagttaagtgattgttataaagagaaaagatcaattaagttagaaa |
71 |
Q |
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| T |
12147509 |
agaatataaatctgaaaatacgttaagtgattgttataaagaggaaagatcaattaagttagaaa |
12147573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1142 (Bit Score: 101; Significance: 2e-50; HSPs: 1)
Name: scaffold1142
Description:
Target: scaffold1142; HSP #1
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 36 - 140
Target Start/End: Original strand, 1 - 105
Alignment:
| Q |
36 |
attgttataaagagaaaagatcaattaagttagaaacacgaaaattatgatgaataaattgtatctcttacttctctggctccttctacctctccctctg |
135 |
Q |
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| T |
1 |
attgttataaagagaaaagatcaattaagttagaaacacgaaaattatgatgaataaattgtatctcttacttctctggcttcttctacctctccctctg |
100 |
T |
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| Q |
136 |
aatat |
140 |
Q |
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||||| |
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| T |
101 |
aatat |
105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 94; Significance: 3e-46; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 53349 - 53216
Alignment:
| Q |
7 |
agaatataaatctgaaaataagttaagtgattgttataaagagaaaagatcaattaagttagaaacacgaaaattatgatgaataaattgtatctcttac |
106 |
Q |
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||||| |||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||| || |||| |
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| T |
53349 |
agaatgtaaatctgaaaatatgttaagtgaatgttataaagaggaaagatcaattaagttagaaatacgaaaattatcatgaataaattgtagctgttac |
53250 |
T |
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| Q |
107 |
ttctctggctccttctacctctccctctgaatat |
140 |
Q |
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|||||||||| |||||||||||||||| |||||| |
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| T |
53249 |
ttctctggcttcttctacctctccctccgaatat |
53216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 3e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 22393062 - 22393195
Alignment:
| Q |
7 |
agaatataaatctgaaaataagttaagtgattgttataaagagaaaagatcaattaagttagaaacacgaaaattatgatgaataaattgtatctcttac |
106 |
Q |
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||||| |||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||| || |||| |
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| T |
22393062 |
agaatgtaaatctgaaaatatgttaagtgaatgttataaagaggaaagatcaattaagttagaaatacgaaaattatcatgaataaattgtagctgttac |
22393161 |
T |
|
| Q |
107 |
ttctctggctccttctacctctccctctgaatat |
140 |
Q |
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|||||||||| |||||||||||||||| |||||| |
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| T |
22393162 |
ttctctggcttcttctacctctccctccgaatat |
22393195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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