View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0113-INSERTION-6 (Length: 639)
Name: NF0113-INSERTION-6
Description: NF0113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0113-INSERTION-6 |
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Alignment Details
Target: chr6 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 90 - 550
Target Start/End: Complemental strand, 4141724 - 4141264
Alignment:
| Q |
90 |
gataaagtgaacaaagcttatgaatcacaatactttgaagagaggggcaggcgcagatgaatttcttcaaccaatcccaatgataatattcctcatcctc |
189 |
Q |
| |
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|||| ||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4141724 |
gatagagttaacaaaccttatgaatcacaatactttgaagagaggggcaggcgcggatgaatttcttcaaccaatcccaatgataatattcctcatcctc |
4141625 |
T |
|
| Q |
190 |
cttctcaaagctaagctccatatgagttaaattgaaaaactgagcagtgtcttgttgttcaggtgtttgtaccggcgcgacatagtcaaacaatttcaag |
289 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| || |||||||||||||||||||||||| |
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| T |
4141624 |
cttctcaaagctaagctccatatgagttaaattgaaaaactgagtagtgtcttgttgttcagatgtttgtactggtgcgacatagtcaaacaatttcaag |
4141525 |
T |
|
| Q |
290 |
ggtgtttgtaccacaacttgcgcgcgtagaaactccacattgtaaaacaatttcaagggcaaaaaagacgaaatagaagaagagtcggaaatgtgggctt |
389 |
Q |
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|||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4141524 |
ggtgtttgtaccgcgacttgtgcgcgtagaaactccacattgtaaaacaatttcaagggcaaaaaagacgaaatagaagaagagtcggaaatgtgggctt |
4141425 |
T |
|
| Q |
390 |
tgagcaatttggggaagggttttaacaacttatctgtttgtttagtaagagcatcaagagtatgattatcatcattggtggtgacattttttatgagtaa |
489 |
Q |
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||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
4141424 |
tgagcaatttggggaagggttttaacaacttgtctctttgtttagtaagagcatcaagagtatcattatcatcattggtggtgacattttttatgagcaa |
4141325 |
T |
|
| Q |
490 |
atcctcaagaagtggacatacaaagagaatcttaataagatatttaagctttagaatatga |
550 |
Q |
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|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||| |
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|
| T |
4141324 |
atcctcaagaagtggacatacagagagaatctgaataagatatttaagctttagaaaatga |
4141264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 562 - 639
Target Start/End: Complemental strand, 4140706 - 4140629
Alignment:
| Q |
562 |
atttgtgaagagggcaaatatgagaggatgtgatgaagtatttcatccggtaaatcgctgatactgtctgtacctttt |
639 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||| |
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| T |
4140706 |
atttgtgaggagggcaaaaatgagaggatgtgatggagtatttcatccggtaaatcgctgatcctgtctgttcctttt |
4140629 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 90 - 541
Target Start/End: Original strand, 3854914 - 3855350
Alignment:
| Q |
90 |
gataaagtgaacaaagcttatgaatcacaatactttgaagagaggggcaggcgcagatgaatttcttcaaccaatcccaatga---taatattcctcatc |
186 |
Q |
| |
|
|||||||| |||||| ||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||| || |||||||||||||| |
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|
| T |
3854914 |
gataaagttaacaaaccttatgaattacaatactttgaagagaggggcaggcgcggatgaacttcttcaaccaatcccaacgacaataatattcctcatc |
3855013 |
T |
|
| Q |
187 |
ctccttctcaaagctaagctccatatgagttaaattgaaaaactgagcagtgtcttgttgttcaggtgtttgtaccggcgcgacatagtcaaacaatttc |
286 |
Q |
| |
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||| ||||||||||||||||||| ||||||||||||||||||||||| ||| ||||| ||||||||||||| |||||||||| |
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| T |
3855014 |
ctctttctcaaagctaagctccacatgagttaaattgaaaaactgagt------------------tgtctgtactggcgcgacatagttaaacaatttc |
3855095 |
T |
|
| Q |
287 |
aagggtgtttgtaccacaacttgcgcgcgtagaaactccacattgtaaaacaatttcaagggcaaaaaagacgaaatagaagaagagtcggaaatgtggg |
386 |
Q |
| |
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|||||| || ||||| | ||||| |||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||| |||||||||| |
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| T |
3855096 |
aagggttttcgtaccgctacttgtgcgcgtagaaactccacattgtaaaacaatttcaagggaaaaaaataagaaatagaagaagagtcagaaatgtggg |
3855195 |
T |
|
| Q |
387 |
ctttgagcaatttggggaagggttttaacaacttatctgtttgtttagtaagagcatcaagagtatgattatcatcattggtggtgacattttttatgag |
486 |
Q |
| |
|
||||||||| ||||||||||||| ||| |||| ||||||||||||| ||||||||||||||||| ||||||||||| |||| |||||||||||||||| |
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|
| T |
3855196 |
atttgagcaaattggggaagggttctaataactcgtctgtttgtttagcaagagcatcaagagtatcattatcatcatgggtgctgacattttttatgag |
3855295 |
T |
|
| Q |
487 |
taaatcctcaagaagtggacatacaaagagaatcttaataagatatttaagcttt |
541 |
Q |
| |
|
||||||||| |||| |||||||||| ||||||||||||||||||||||||||||| |
|
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| T |
3855296 |
taaatcctcgagaaatggacatacagagagaatcttaataagatatttaagcttt |
3855350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 473 - 550
Target Start/End: Complemental strand, 1882095 - 1882018
Alignment:
| Q |
473 |
acattttttatgagtaaatcctcaagaagtggacatacaaagagaatcttaataagatatttaagctttagaatatga |
550 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||| ||| ||||||||||| |||| |
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|
| T |
1882095 |
acatttttgatgagtaaatcctcaagaagcggacatacagagagaatcttaataagaaattgaagctttagaaaatga |
1882018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 248
Target Start/End: Complemental strand, 1882232 - 1882185
Alignment:
| Q |
201 |
taagctccatatgagttaaattgaaaaactgagcagtgtcttgttgtt |
248 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| ||||||||| |||| |
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|
| T |
1882232 |
taagctccatatgagttaaattgagaaattgagtagtgtcttgatgtt |
1882185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 1882311 - 1882267
Alignment:
| Q |
125 |
tgaagagaggggcaggcgcagatgaatttcttcaaccaatcccaa |
169 |
Q |
| |
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|||||||||||||||||| ||| |||||| || |||||||||||| |
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| T |
1882311 |
tgaagagaggggcaggcggagacgaatttgtttaaccaatcccaa |
1882267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 473 - 550
Target Start/End: Complemental strand, 41541889 - 41541812
Alignment:
| Q |
473 |
acattttttatgagtaaatcctcaagaagtggacatacaaagagaatcttaataagatatttaagctttagaatatga |
550 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||| ||||||| ||| |||| |
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|
| T |
41541889 |
acatttttgatgagtaaatcctcaagaagcggacatacggagagaatcttaataagaaattgaagctttggaaaatga |
41541812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 365 - 413
Target Start/End: Complemental strand, 41541991 - 41541943
Alignment:
| Q |
365 |
gaagaagagtcggaaatgtgggctttgagcaatttggggaagggtttta |
413 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41541991 |
gaagaagagtcagaaatgtgggctttgagcaaattggggaagggtttta |
41541943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 248
Target Start/End: Complemental strand, 41542101 - 41542054
Alignment:
| Q |
201 |
taagctccatatgagttaaattgaaaaactgagcagtgtcttgttgtt |
248 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| ||||||||| |||| |
|
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| T |
41542101 |
taagctccatatgagttaaattgagaaattgagtagtgtcttgatgtt |
41542054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 573 - 632
Target Start/End: Original strand, 44636883 - 44636942
Alignment:
| Q |
573 |
gggcaaatatgagaggatgtgatgaagtatttcatccggtaaatcgctgatactgtctgt |
632 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||| |||||||||||||| |||||||| |
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|
| T |
44636883 |
gggcaaatatgagaggatgtgatatattatttcatcgggtaaatcgctgatcctgtctgt |
44636942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 25126846 - 25126882
Alignment:
| Q |
188 |
tccttctcaaagctaagctccatatgagttaaattga |
224 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||| |
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|
| T |
25126846 |
tcctcctcaaacctaagctccatatgagttaaattga |
25126882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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