View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0113-INSERTION-7 (Length: 236)
Name: NF0113-INSERTION-7
Description: NF0113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0113-INSERTION-7 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 6 - 232
Target Start/End: Complemental strand, 45012471 - 45012245
Alignment:
| Q |
6 |
caccaagttccacagtgcaccgaaaatcacagtattccagcagtaatattctctactgcaggatacactggaaaccatttccatgaattcagtgacatta |
105 |
Q |
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| T |
45012471 |
caccaagtctcacagtgcaccaaataccacagcattccagcagtaatattctctacggcaggatacactggaaaccatttccatgaattcagtgacattg |
45012372 |
T |
|
| Q |
106 |
tcattccactgtttttgacgtgcagaaaatttaatggacaagtgcaacttatcataactgataacaagtcttggtggatttccaaacaccaagcatttct |
205 |
Q |
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||||||||||||||||||| || ||| |||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45012371 |
tcattccactgtttttgacttgtagacaatttaatggacaagtacagcttatcataactgataagaagtcttggtggatttccaaacaccaagcatttct |
45012272 |
T |
|
| Q |
206 |
taaaaagctttccaactatgagattat |
232 |
Q |
| |
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|||||| || || || ||||| ||||| |
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| T |
45012271 |
taaaaaactgtctaattatgaaattat |
45012245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 6 - 118
Target Start/End: Original strand, 45018649 - 45018761
Alignment:
| Q |
6 |
caccaagttccacagtgcaccgaaaatcacagtattccagcagtaatattctctactgcaggatacactggaaaccatttccatgaattcagtgacatta |
105 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45018649 |
caccaagttccacagtgcaccgaaaatcacagtattccagcagtaatattctctactgcaggatacactggaaaccatttccatgaattcagtgacatta |
45018748 |
T |
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| Q |
106 |
tcattccactgtt |
118 |
Q |
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||||||||||||| |
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| T |
45018749 |
tcattccactgtt |
45018761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 3173006 - 3172790
Alignment:
| Q |
16 |
cacagtgcaccgaaaatcacagtattccagcagtaatattctctactgcaggatacactggaaaccatttccatgaattcagtgacattatcattccact |
115 |
Q |
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||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
3173006 |
cacagtgcaccaaatatcacagcattccagcagtaatattctctactgcaggatacactggaaaccatttccatgaattcagtgatattgtcattccact |
3172907 |
T |
|
| Q |
116 |
gtttttgacgtgcagaaaatttaatggacaagtgcaacttatcataactgataacaagtcttggtggatttccaaacaccaagcatttcttaaaaagctt |
215 |
Q |
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||||||||| || ||| ||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
3172906 |
gtttttgacttgtagactatttaatggacaagtacagcttatcataactgataagaagtcttggtggatttccaaacaccaagcgtttcttaaaaaactg |
3172807 |
T |
|
| Q |
216 |
tccaactatgagattat |
232 |
Q |
| |
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|| |||||||| ||||| |
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| T |
3172806 |
tctaactatgaaattat |
3172790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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