View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0113-INSERTION-9 (Length: 173)

Name: NF0113-INSERTION-9
Description: NF0113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0113-INSERTION-9
NF0113-INSERTION-9
[»] chr4 (8 HSPs)
chr4 (7-169)||(3762853-3763015)
chr4 (10-159)||(3776931-3777077)
chr4 (7-148)||(3751868-3752015)
chr4 (10-159)||(3781244-3781393)
chr4 (10-161)||(3767260-3767414)
chr4 (19-148)||(3746063-3746198)
chr4 (7-148)||(3755735-3755882)
chr4 (7-89)||(3771493-3771572)


Alignment Details
Target: chr4 (Bit Score: 159; Significance: 6e-85; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 6e-85
Query Start/End: Original strand, 7 - 169
Target Start/End: Original strand, 3762853 - 3763015
Alignment:
Q  7 agtttttccttcttgtttaggcctaacaacttgcggtctattggacgaacaaaatcaaaagtttcttcattttctgatgatgaagttgatgtgagggtgt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3762853 agtttttccttcttgtttaggcctaacaacttgcggtctattggacgaacaaaatcaaaagtttcttcattttctgatgatgaagttgatgtgagggtgt 3762952  T
Q  107 tgcaagaaagtagaaggaagaagaacaaagtgaggaaatgtttggaagacattatttggtgga 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3762953 tgcaagaaagtagaaggaagaagaacaaagtgaggaaatgtttggaagacataatttggtgga 3763015  T

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Target: chr4; HSP #2
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 10 - 159
Target Start/End: Original strand, 3776931 - 3777077
Alignment:
Q  10 ttttccttcttgtttaggcctaacaacttgcggtctattggacgaacaaaatcaaaagtttcttcattttctgatgatgaagttgatgtgagggtgttgc 109  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| |||||| ||| ||||   || ||||| ||||| |    
T  3776931 ttttccttcttgtttaggcctaacaacttgcgatctattggacgaacaaaatcaaaggtatcttctttttctaatgttgaa---gaagtgagtgtgttac 3777027  T
Q  110 aagaaagtagaaggaagaagaacaaagtgaggaaatgtttggaagacatt 159  Q
    |||| |  ||||||||||||||||||||||||||||||||||||||||||    
T  3777028 aagagataagaaggaagaagaacaaagtgaggaaatgtttggaagacatt 3777077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 5e-36
Query Start/End: Original strand, 7 - 148
Target Start/End: Original strand, 3751868 - 3752015
Alignment:
Q  7 agtttttccttcttgtttaggcctaacaacttgcggtctattggacgaacaaaatcaaaagtttcttcattttctgatg------atgaagttgatgtga 100  Q
    |||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||  |||||| |||      |||| ||||| ||||    
T  3751868 agtttttctttcttgtttaggcttaacaatttgcggtctattggacgaacaaaatcaaaagtttcttgtttttctaatgattgtaatgatgttgaagtga 3751967  T
Q  101 gggtgttgcaagaaagtagaaggaagaagaacaaagtgaggaaatgtt 148  Q
    | ||||||||||| || ||||||||||||||||||||||| |||||||    
T  3751968 gagtgttgcaagagaggagaaggaagaagaacaaagtgagaaaatgtt 3752015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 10 - 159
Target Start/End: Original strand, 3781244 - 3781393
Alignment:
Q  10 ttttccttcttgtttaggcctaacaacttgcggtctattggacgaacaaaatcaaaagtttcttcattttctgatgatgaagttgatgtgagggtgttgc 109  Q
    ||||| |||||||||||||||||||| ||||| ||||| |||||||||||||| ||||| ||||  ||||||||||| |  |  |  ||||| |||||||    
T  3781244 ttttctttcttgtttaggcctaacaatttgcgatctatcggacgaacaaaatcgaaagtgtcttgtttttctgatgaagttgaagtagtgagtgtgttgc 3781343  T
Q  110 aagaaagtagaaggaagaagaacaaagtgaggaaatgtttggaagacatt 159  Q
    |||| |  ||||||||||||||||||||||||||||||| ||||| ||||    
T  3781344 aagatatgagaaggaagaagaacaaagtgaggaaatgttgggaaggcatt 3781393  T

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Target: chr4; HSP #5
Raw Score: 65; E-Value: 7e-29
Query Start/End: Original strand, 10 - 161
Target Start/End: Original strand, 3767260 - 3767414
Alignment:
Q  10 ttttccttcttgtttaggcctaacaacttgcggtctattggacgaacaaaatcaaaagtttcttcattttctgatgatgaagttgatgtgagggtgttgc 109  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||  || ||||  ||||||||||| |  |  |  | ||| |||||||    
T  3767260 ttttccttcttgtttaggcctaacaacttgcgatctattggacgaacaaaatcaactgtgtcttgtttttctgatgaagttgaagcagagagtgtgttgc 3767359  T
Q  110 aagaaagtagaaggaagaagaacaaag---tgaggaaatgtttggaagacattat 161  Q
    |||| |  |||||||||||||||||||   |||||||||||||||||| ||||||    
T  3767360 aagatatgagaaggaagaagaacaaagtgatgaggaaatgtttggaaggcattat 3767414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 3746063 - 3746198
Alignment:
Q  19 ttgtttaggcctaacaacttgcggtctattggacgaacaaaatcaaaagtttcttcattttc------tgatgatgaagttgatgtgagggtgttgcaag 112  Q
    |||||||||  |||||| ||| ||||||||| ||||||||||||| |||||||||| |||||      || |||||||||||| ||||||||||||||||    
T  3746063 ttgtttaggtgtaacaatttggggtctattgaacgaacaaaatcataagtttcttctttttcaaatgatggtgatgaagttgaagtgagggtgttgcaag 3746162  T
Q  113 aaagtagaaggaagaagaacaaagtgaggaaatgtt 148  Q
    | |  |||||||||||||| ||||||||||| ||||    
T  3746163 agaagagaaggaagaagaaaaaagtgaggaagtgtt 3746198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 7 - 148
Target Start/End: Original strand, 3755735 - 3755882
Alignment:
Q  7 agtttttccttcttgtttaggcctaacaacttgcggtctattggacgaacaaaatcaaaagtttcttcattttctgatgatgaagttgat---------g 97  Q
    ||||||||||||||   ||||| ||| || ||||||||||| ||||||||||| |||||||| ||  |||||||||||||||| | ||||         |    
T  3755735 agtttttccttctt---taggcttaataatttgcggtctataggacgaacaaattcaaaagtgtcaccattttctgatgatgatgatgatgttgttaaag 3755831  T
Q  98 tgagggtgttgcaagaaagtagaaggaagaagaacaaagtgaggaaatgtt 148  Q
    ||| ||||||||||||||| |||||||||||||||||||||| ||| ||||    
T  3755832 tgacggtgttgcaagaaagaagaaggaagaagaacaaagtgatgaagtgtt 3755882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 3771493 - 3771572
Alignment:
Q  7 agtttttccttcttgtttaggcctaacaacttgcggtctattggacgaacaaaatcaaaagtttcttcattttctgatgatga 89  Q
    ||||||||||||||   ||||| ||| || ||||||||||| ||||||||||| |||||||| || |||||||||||||||||    
T  3771493 agtttttccttctt---taggcttaataatttgcggtctataggacgaacaaattcaaaagtgtcatcattttctgatgatga 3771572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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