View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0113_low_12 (Length: 525)
Name: NF0113_low_12
Description: NF0113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0113_low_12 |
 | |
|
| [»] scaffold0433 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 159 - 505
Target Start/End: Original strand, 3762512 - 3762858
Alignment:
| Q |
159 |
cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
3762512 |
cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactaccattatactttccttcaatgaaagc |
3762611 |
T |
|
| Q |
259 |
aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa |
358 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3762612 |
aaaattcactgtcataagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagctcttccaacaagtttagaactcagttcgggtcctaaa |
3762711 |
T |
|
| Q |
359 |
gtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttat |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3762712 |
gtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttat |
3762811 |
T |
|
| Q |
459 |
ttccacttagtatgtcgtgccagtagaatctaaaatggcttagtttt |
505 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3762812 |
ttccacttagtatgtcatgccagtagaatctaaaatggcttagtttt |
3762858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 159 - 394
Target Start/End: Original strand, 3776593 - 3776828
Alignment:
| Q |
159 |
cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc |
258 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| |
|
|
| T |
3776593 |
cactaccaccaacaacaggcatttccctaaccttattacgagcatgattcctccccaagatagtaatggtactaccattatactttccttcaatgaaagc |
3776692 |
T |
|
| Q |
259 |
aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa |
358 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||| ||| ||||||||| |
|
|
| T |
3776693 |
aaaattcattgtcataagaaaacctatttcttcctgtgaagcagatgcatagaatccttgagctctaccaacaagtttagaactcaattcgggtcctaaa |
3776792 |
T |
|
| Q |
359 |
gtcaaagggttgtcaatcatgcggactaaaccaaaa |
394 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||| |
|
|
| T |
3776793 |
gttaaagggttgtcaatcatgctaactaaaccaaaa |
3776828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 159 - 396
Target Start/End: Original strand, 3780906 - 3781143
Alignment:
| Q |
159 |
cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc |
258 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||| || ||||||||||| | |||||||| |||||| |||||||||||||||||||| ||||| |
|
|
| T |
3780906 |
cactaccaccaacaacaggcatctccctaaccaaattaatggcaggattcctccctacgatagtaagagtactaccattatactttccttcaatgaaagc |
3781005 |
T |
|
| Q |
259 |
aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa |
358 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||| ||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
3781006 |
aaaattcattgtcataagaaaacctagttcttcttgtgaagcagatgcatagaatccttgagctcttccaacaagcttagaactcagttctggtcctaaa |
3781105 |
T |
|
| Q |
359 |
gtcaaagggttgtcaatcatgcggactaaaccaaaagc |
396 |
Q |
| |
|
|| |||||||||||||||||| || ||||||||||| |
|
|
| T |
3781106 |
gttaaagggttgtcaatcatgttaaccaaaccaaaagc |
3781143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 164 - 501
Target Start/End: Original strand, 3745721 - 3746052
Alignment:
| Q |
164 |
ccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaat |
263 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||| | ||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
3745721 |
ccaccaacaataggcatttccctaaccttattaagagcagaatttctccccaagatagtaatagtactcccattatactttccttcaatgaaagcaaaag |
3745820 |
T |
|
| Q |
264 |
tcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaa |
363 |
Q |
| |
|
|||| | || | |||| | || |||| ||||||||||||||| || |||||||||||||||||||| |||||||||| || |||||||||||| || |
|
|
| T |
3745821 |
tcatagccatgaacaaactaaactcatcctttgatgcagatgcatacaacccttgagcttttccaacaagcttagaactcatttttggtcctaaagttaa |
3745920 |
T |
|
| Q |
364 |
agggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttatttcca |
463 |
Q |
| |
|
|||||||||||| ||| |||||||||||||| | || |||| || ||| ||||||||| || | |||| |||||||| |||||||| |||||| |
|
|
| T |
3745921 |
agggttgtcaataatgttgactaaaccaaaagaagta------gttgtgtttagcttcaatggtagtggtacaactgtaattgaagtagggttttttcca |
3746014 |
T |
|
| Q |
464 |
cttagtatgtcgtgccagtagaatctaaaatggcttag |
501 |
Q |
| |
|
|| | ||||| ||||| ||||||| ||||| ||||| |
|
|
| T |
3746015 |
ctcatgatgtcatgccaaaagaatctgaaatgacttag |
3746052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 159 - 505
Target Start/End: Original strand, 3755400 - 3755740
Alignment:
| Q |
159 |
cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc |
258 |
Q |
| |
|
|||| ||||||| ||||||||||| ||||| |||| || | | | |||||| ||||| ||||||| |||||||||||||||||||||||| | ||||| |
|
|
| T |
3755400 |
cactaccaccaatcacaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgtacttccattatactttccttcagtaaaagc |
3755499 |
T |
|
| Q |
259 |
aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa |
358 |
Q |
| |
|
||||||||| | || ||| ||| | | ||| || | |||||||||||||||||||||||||||||||||||| |||||| ||| | |||||||||| |
|
|
| T |
3755500 |
aaaattcatagccataagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttccaacaatcttagaattcaactgtggtcctaaa |
3755599 |
T |
|
| Q |
359 |
gtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttat |
458 |
Q |
| |
|
|| ||||||||||| |||||||||||| ||||||| ||| | |||||||| |||||||| ||||||| | |||| || || || |||||||| | |
|
|
| T |
3755600 |
gttaaagggttgtcgatcatgcggactgaaccaaaggcagt------ggttgagtttagtttcattggtggtgggacaactgcaactgaagtagggtttt |
3755693 |
T |
|
| Q |
459 |
ttccacttagtatgtcgtgccagtagaatctaaaatggcttagtttt |
505 |
Q |
| |
|
||||||| | ||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
3755694 |
ttccactcactatgtcgtgccagtagaatctgaaatgacttagtttt |
3755740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 159 - 505
Target Start/End: Original strand, 3751533 - 3751873
Alignment:
| Q |
159 |
cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc |
258 |
Q |
| |
|
|||| ||||||| || ||||||||| ||| ||||||||| | | | ||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| |
|
|
| T |
3751533 |
cactaccaccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatactttccttcaatgaaagc |
3751632 |
T |
|
| Q |
259 |
aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa |
358 |
Q |
| |
|
||| ||||| | || |||||||| | || || |||||||||||||||||||| |||||||||||||||||||| |||||||||| || |||||||| | |
|
|
| T |
3751633 |
aaagttcatagccatgagaaaaccaaaatcatcttgtgatgcagatgcatagaaaccttgagcttttccaacaagcttagaactcaattgtggtcctata |
3751732 |
T |
|
| Q |
359 |
gtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttat |
458 |
Q |
| |
|
|||||||||| |||| |||| |||| |||||||| |||| ||||| || ||| |||||||||||| ||||||||||||||| || || || | |
|
|
| T |
3751733 |
gtcaaagggtcatcaaacatgttgactgaaccaaaa----taag--tggttgtgtttagcttcaatggtggtggaacaattgtaattgcagtgggatttt |
3751826 |
T |
|
| Q |
459 |
ttccacttagtatgtcgtgccagtagaatctaaaatggcttagtttt |
505 |
Q |
| |
|
| ||||| | || || ||||| |||||||| ||||| ||||||||| |
|
|
| T |
3751827 |
tcccactcaagatatcatgccaatagaatctgaaatgacttagtttt |
3751873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 159 - 393
Target Start/End: Original strand, 3766928 - 3767162
Alignment:
| Q |
159 |
cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc |
258 |
Q |
| |
|
|||| ||||||| ||||||||||| ||||| |||| || | | | |||||| ||||| ||||||| |||||||||||||||||||||||| | ||||| |
|
|
| T |
3766928 |
cactaccaccaatcacaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgtacttccattatactttccttcagtaaaagc |
3767027 |
T |
|
| Q |
259 |
aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa |
358 |
Q |
| |
|
||||||||| | || ||| ||| | | ||| || | |||||||||||||||||||||||||||||||||||| |||||| ||| | |||||||||| |
|
|
| T |
3767028 |
aaaattcatagccataagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttccaacaatcttagaattcaactgtggtcctaaa |
3767127 |
T |
|
| Q |
359 |
gtcaaagggttgtcaatcatgcggactaaaccaaa |
393 |
Q |
| |
|
|| ||||||||||| |||||||||||| ||||||| |
|
|
| T |
3767128 |
gttaaagggttgtcgatcatgcggactgaaccaaa |
3767162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 305 - 505
Target Start/End: Original strand, 3771304 - 3771498
Alignment:
| Q |
305 |
gcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggc |
404 |
Q |
| |
|
|||| ||| ||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| | |
|
|
| T |
3771304 |
gcatcgaacccttgagattttccaacaagcttagaactcagttctggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaagcagt----- |
3771398 |
T |
|
| Q |
405 |
cggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttatttccacttagtatgtcgtgccagtagaatctaaaatggcttagttt |
504 |
Q |
| |
|
||||| || |||||||| ||||||| |||||||| | | | | |||||| |||||||| ||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
3771399 |
-ggttgtgtttagtttcattggtggtggaacaattattaccgaaggagggttttttccactcgctatctcgtgccagtagaatctgaaatgacttagttt |
3771497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 280
Target Start/End: Original strand, 3789113 - 3789175
Alignment:
| Q |
218 |
atagtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaa |
280 |
Q |
| |
|
|||||||| || |||||||||||||||||||||| ||||||||| ||||| ||| ||||||| |
|
|
| T |
3789113 |
atagtaatggtgcttccattatactttccttcaaacaaagcaaagttcataatcataagaaaa |
3789175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 280
Target Start/End: Original strand, 3845060 - 3845128
Alignment:
| Q |
212 |
cccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaa |
280 |
Q |
| |
|
|||||||||||||| || ||||||||||| || ||||||| || |||||||||||| ||| ||||||| |
|
|
| T |
3845060 |
cccaagatagtaattgtgcttccattatatttcccttcaaataatgcaaaattcattatcataagaaaa |
3845128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 205 - 267
Target Start/End: Original strand, 3770737 - 3770799
Alignment:
| Q |
205 |
attcctccccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaattcat |
267 |
Q |
| |
|
|||||| ||||| ||||||| ||||||||||||||||||||||| | ||| |||||||||| |
|
|
| T |
3770737 |
attccttcccaaaatagtaagtttacttccattatactttccttcagtaaaaacaaaattcat |
3770799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 3851509 - 3851554
Alignment:
| Q |
216 |
agatagtaatagtacttccattatactttccttcaatcaaagcaaa |
261 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||| ||| ||||| |
|
|
| T |
3851509 |
agatagtaatggtactcccattatactttccttcaaacaaggcaaa |
3851554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 49082812 - 49082741
Alignment:
| Q |
73 |
gttggattggaatataagtaagtatattgacattgacatacagtagtatttcttctccacacatgctgccacaggttc |
150 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
49082812 |
gttggattggaatataaataagtatattgacat------acagtagtatttcttctccacacatgctgccacaagttc |
49082741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 175 - 501
Target Start/End: Complemental strand, 25985591 - 25985274
Alignment:
| Q |
175 |
aggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtcaca |
274 |
Q |
| |
|
|||||| ||||||||||||| | | | |||||||||||||| ||||| || || || ||||| ||||| |||||||| | |||||||||||| | || |
|
|
| T |
25985591 |
aggcatttccctaaccttatcagaaacaggattcctccccaaaatagtgatggtgctaccattgtacttcccttcaattatagcaaaattcatagccatg |
25985492 |
T |
|
| Q |
275 |
agaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaaagggttgtcaa |
374 |
Q |
| |
|
| || ||| || ||||||| || |||||||||||||| ||||||||||| | ||| ||||||| || |||||||| || |||||||| |||| |
|
|
| T |
25985491 |
ataaggtctacctcactttgtgatgttgaggcatagaatccttgtgcttttccaaccaatttggaactcaattgaggtcctaaggttaaagggttctcaa |
25985392 |
T |
|
| Q |
375 |
tcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttatttccacttagtatgtc |
474 |
Q |
| |
|
||||| ||||||||||||||| | |||||||| |||||| |||||| ||||||||| |||| | |||||| |||||||| | |||||| |
|
|
| T |
25985391 |
tcatgttaactaaaccaaaagcagt------ggttgagt---ttttcaaaggtggtggaacaattggtattgaagaagggttgtttccactaactatgtc |
25985301 |
T |
|
| Q |
475 |
gtgccagtagaatctaaaatggcttag |
501 |
Q |
| |
|
||||| |||||| | ||||||||||| |
|
|
| T |
25985300 |
atgccaatagaattttaaatggcttag |
25985274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0433 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0433
Description:
Target: scaffold0433; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 280
Target Start/End: Complemental strand, 10088 - 10020
Alignment:
| Q |
212 |
cccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaa |
280 |
Q |
| |
|
|||||||||||||| || ||||||||||| || ||||||| || |||||||||||| ||| ||||||| |
|
|
| T |
10088 |
cccaagatagtaattgtgcttccattatatttcccttcaaataatgcaaaattcattatcataagaaaa |
10020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1546 times since January 2019
Visitors: 1425