View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0113_low_14 (Length: 523)
Name: NF0113_low_14
Description: NF0113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0113_low_14
[» ] scaffold0433 (1 HSPs)
Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 157 - 503
Target Start/End: Original strand, 3762512 - 3762858
Alignment:
Q
157
cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc
256
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
T
3762512
cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactaccattatactttccttcaatgaaagc
3762611
T
Q
257
aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa
356
Q
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
T
3762612
aaaattcactgtcataagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagctcttccaacaagtttagaactcagttcgggtcctaaa
3762711
T
Q
357
gtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttat
456
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
3762712
gtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttat
3762811
T
Q
457
ttccacttagtatgtcgtgccagtagaatctaaaatggcttagtttt
503
Q
|||||||||||||||| ||||||||||||||||||||||||||||||
T
3762812
ttccacttagtatgtcatgccagtagaatctaaaatggcttagtttt
3762858
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 157 - 392
Target Start/End: Original strand, 3776593 - 3776828
Alignment:
Q
157
cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc
256
Q
|||| ||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
T
3776593
cactaccaccaacaacaggcatttccctaaccttattacgagcatgattcctccccaagatagtaatggtactaccattatactttccttcaatgaaagc
3776692
T
Q
257
aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa
356
Q
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||| ||| |||||||||
T
3776693
aaaattcattgtcataagaaaacctatttcttcctgtgaagcagatgcatagaatccttgagctctaccaacaagtttagaactcaattcgggtcctaaa
3776792
T
Q
357
gtcaaagggttgtcaatcatgcggactaaaccaaaa
392
Q
|| ||||||||||||||||||| ||||||||||||
T
3776793
gttaaagggttgtcaatcatgctaactaaaccaaaa
3776828
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 157 - 394
Target Start/End: Original strand, 3780906 - 3781143
Alignment:
Q
157
cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc
256
Q
|||| ||||||||||||||||||||||||||| ||||| || ||||||||||| | |||||||| |||||| |||||||||||||||||||| |||||
T
3780906
cactaccaccaacaacaggcatctccctaaccaaattaatggcaggattcctccctacgatagtaagagtactaccattatactttccttcaatgaaagc
3781005
T
Q
257
aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa
356
Q
|||||||||||||| ||||||||||| |||||| ||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
T
3781006
aaaattcattgtcataagaaaacctagttcttcttgtgaagcagatgcatagaatccttgagctcttccaacaagcttagaactcagttctggtcctaaa
3781105
T
Q
357
gtcaaagggttgtcaatcatgcggactaaaccaaaagc
394
Q
|| |||||||||||||||||| || |||||||||||
T
3781106
gttaaagggttgtcaatcatgttaaccaaaccaaaagc
3781143
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 162 - 499
Target Start/End: Original strand, 3745721 - 3746052
Alignment:
Q
162
ccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaat
261
Q
|||||||||| |||||| |||||||||||||||||||| | ||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||
T
3745721
ccaccaacaataggcatttccctaaccttattaagagcagaatttctccccaagatagtaatagtactcccattatactttccttcaatgaaagcaaaag
3745820
T
Q
262
tcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaa
361
Q
|||| | || | |||| | || |||| ||||||||||||||| || |||||||||||||||||||| |||||||||| || |||||||||||| ||
T
3745821
tcatagccatgaacaaactaaactcatcctttgatgcagatgcatacaacccttgagcttttccaacaagcttagaactcatttttggtcctaaagttaa
3745920
T
Q
362
agggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttatttcca
461
Q
|||||||||||| ||| |||||||||||||| | || |||| || ||| ||||||||| || | |||| |||||||| |||||||| ||||||
T
3745921
agggttgtcaataatgttgactaaaccaaaagaagta------gttgtgtttagcttcaatggtagtggtacaactgtaattgaagtagggttttttcca
3746014
T
Q
462
cttagtatgtcgtgccagtagaatctaaaatggcttag
499
Q
|| | ||||| ||||| ||||||| ||||| |||||
T
3746015
ctcatgatgtcatgccaaaagaatctgaaatgacttag
3746052
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 157 - 503
Target Start/End: Original strand, 3755400 - 3755740
Alignment:
Q
157
cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc
256
Q
|||| ||||||| ||||||||||| ||||| |||| || | | | |||||| ||||| ||||||| |||||||||||||||||||||||| | |||||
T
3755400
cactaccaccaatcacaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgtacttccattatactttccttcagtaaaagc
3755499
T
Q
257
aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa
356
Q
||||||||| | || ||| ||| | | ||| || | |||||||||||||||||||||||||||||||||||| |||||| ||| | ||||||||||
T
3755500
aaaattcatagccataagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttccaacaatcttagaattcaactgtggtcctaaa
3755599
T
Q
357
gtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttat
456
Q
|| ||||||||||| |||||||||||| ||||||| ||| | |||||||| |||||||| ||||||| | |||| || || || |||||||| |
T
3755600
gttaaagggttgtcgatcatgcggactgaaccaaaggcagt------ggttgagtttagtttcattggtggtgggacaactgcaactgaagtagggtttt
3755693
T
Q
457
ttccacttagtatgtcgtgccagtagaatctaaaatggcttagtttt
503
Q
||||||| | ||||||||||||||||||||| ||||| |||||||||
T
3755694
ttccactcactatgtcgtgccagtagaatctgaaatgacttagtttt
3755740
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 157 - 503
Target Start/End: Original strand, 3751533 - 3751873
Alignment:
Q
157
cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc
256
Q
|||| ||||||| || ||||||||| ||| ||||||||| | | | ||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
T
3751533
cactaccaccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatactttccttcaatgaaagc
3751632
T
Q
257
aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa
356
Q
||| ||||| | || |||||||| | || || |||||||||||||||||||| |||||||||||||||||||| |||||||||| || |||||||| |
T
3751633
aaagttcatagccatgagaaaaccaaaatcatcttgtgatgcagatgcatagaaaccttgagcttttccaacaagcttagaactcaattgtggtcctata
3751732
T
Q
357
gtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttat
456
Q
|||||||||| |||| |||| |||| |||||||| |||| ||||| || ||| |||||||||||| ||||||||||||||| || || || |
T
3751733
gtcaaagggtcatcaaacatgttgactgaaccaaaa----taag--tggttgtgtttagcttcaatggtggtggaacaattgtaattgcagtgggatttt
3751826
T
Q
457
ttccacttagtatgtcgtgccagtagaatctaaaatggcttagtttt
503
Q
| ||||| | || || ||||| |||||||| ||||| |||||||||
T
3751827
tcccactcaagatatcatgccaatagaatctgaaatgacttagtttt
3751873
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 157 - 391
Target Start/End: Original strand, 3766928 - 3767162
Alignment:
Q
157
cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc
256
Q
|||| ||||||| ||||||||||| ||||| |||| || | | | |||||| ||||| ||||||| |||||||||||||||||||||||| | |||||
T
3766928
cactaccaccaatcacaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgtacttccattatactttccttcagtaaaagc
3767027
T
Q
257
aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa
356
Q
||||||||| | || ||| ||| | | ||| || | |||||||||||||||||||||||||||||||||||| |||||| ||| | ||||||||||
T
3767028
aaaattcatagccataagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttccaacaatcttagaattcaactgtggtcctaaa
3767127
T
Q
357
gtcaaagggttgtcaatcatgcggactaaaccaaa
391
Q
|| ||||||||||| |||||||||||| |||||||
T
3767128
gttaaagggttgtcgatcatgcggactgaaccaaa
3767162
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 303 - 503
Target Start/End: Original strand, 3771304 - 3771498
Alignment:
Q
303
gcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggc
402
Q
|||| ||| ||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| |
T
3771304
gcatcgaacccttgagattttccaacaagcttagaactcagttctggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaagcagt-----
3771398
T
Q
403
cggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttatttccacttagtatgtcgtgccagtagaatctaaaatggcttagttt
502
Q
||||| || |||||||| ||||||| |||||||| | | | | |||||| |||||||| ||| ||||||||||||||||| ||||| ||||||||
T
3771399
-ggttgtgtttagtttcattggtggtggaacaattattaccgaaggagggttttttccactcgctatctcgtgccagtagaatctgaaatgacttagttt
3771497
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 278
Target Start/End: Original strand, 3789113 - 3789175
Alignment:
Q
216
atagtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaa
278
Q
|||||||| || |||||||||||||||||||||| ||||||||| ||||| ||| |||||||
T
3789113
atagtaatggtgcttccattatactttccttcaaacaaagcaaagttcataatcataagaaaa
3789175
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 278
Target Start/End: Original strand, 3845060 - 3845128
Alignment:
Q
210
cccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaa
278
Q
|||||||||||||| || ||||||||||| || ||||||| || |||||||||||| ||| |||||||
T
3845060
cccaagatagtaattgtgcttccattatatttcccttcaaataatgcaaaattcattatcataagaaaa
3845128
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 265
Target Start/End: Original strand, 3770737 - 3770799
Alignment:
Q
203
attcctccccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaattcat
265
Q
|||||| ||||| ||||||| ||||||||||||||||||||||| | ||| ||||||||||
T
3770737
attccttcccaaaatagtaagtttacttccattatactttccttcagtaaaaacaaaattcat
3770799
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 3851509 - 3851554
Alignment:
Q
214
agatagtaatagtacttccattatactttccttcaatcaaagcaaa
259
Q
|||||||||| ||||| ||||||||||||||||||| ||| |||||
T
3851509
agatagtaatggtactcccattatactttccttcaaacaaggcaaa
3851554
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 49082812 - 49082741
Alignment:
Q
71
gttggattggaatataagtaagtatattgacattgacatacagtagtatttcttctccacacatgctgccacaggttc
148
Q
||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
T
49082812
gttggattggaatataaataagtatattgacat------acagtagtatttcttctccacacatgctgccacaagttc
49082741
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 173 - 499
Target Start/End: Complemental strand, 25985591 - 25985274
Alignment:
Q
173
aggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtcaca
272
Q
|||||| ||||||||||||| | | | |||||||||||||| ||||| || || || ||||| ||||| |||||||| | |||||||||||| | ||
T
25985591
aggcatttccctaaccttatcagaaacaggattcctccccaaaatagtgatggtgctaccattgtacttcccttcaattatagcaaaattcatagccatg
25985492
T
Q
273
agaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaaagggttgtcaa
372
Q
| || ||| || ||||||| || |||||||||||||| ||||||||||| | ||| ||||||| || |||||||| || |||||||| ||||
T
25985491
ataaggtctacctcactttgtgatgttgaggcatagaatccttgtgcttttccaaccaatttggaactcaattgaggtcctaaggttaaagggttctcaa
25985392
T
Q
373
tcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttatttccacttagtatgtc
472
Q
||||| ||||||||||||||| | |||||||| |||||| |||||| ||||||||| |||| | |||||| |||||||| | ||||||
T
25985391
tcatgttaactaaaccaaaagcagt------ggttgagt---ttttcaaaggtggtggaacaattggtattgaagaagggttgtttccactaactatgtc
25985301
T
Q
473
gtgccagtagaatctaaaatggcttag
499
Q
||||| |||||| | |||||||||||
T
25985300
atgccaatagaattttaaatggcttag
25985274
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: scaffold0433 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0433
Description:
Target: scaffold0433; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 278
Target Start/End: Complemental strand, 10088 - 10020
Alignment:
Q
210
cccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaa
278
Q
|||||||||||||| || ||||||||||| || ||||||| || |||||||||||| ||| |||||||
T
10088
cccaagatagtaattgtgcttccattatatttcccttcaaataatgcaaaattcattatcataagaaaa
10020
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
© Oklahoma State University
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