View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0113_low_15 (Length: 522)

Name: NF0113_low_15
Description: NF0113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0113_low_15
NF0113_low_15
[»] chr4 (12 HSPs)
chr4 (156-502)||(3762512-3762858)
chr4 (156-391)||(3776593-3776828)
chr4 (156-393)||(3780906-3781143)
chr4 (161-498)||(3745721-3746052)
chr4 (156-502)||(3755400-3755740)
chr4 (156-502)||(3751533-3751873)
chr4 (156-390)||(3766928-3767162)
chr4 (302-502)||(3771304-3771498)
chr4 (215-277)||(3789113-3789175)
chr4 (209-277)||(3845060-3845128)
chr4 (202-264)||(3770737-3770799)
chr4 (213-258)||(3851509-3851554)
[»] chr7 (2 HSPs)
chr7 (70-147)||(49082741-49082812)
chr7 (172-498)||(25985274-25985591)
[»] scaffold0433 (1 HSPs)
scaffold0433 (209-277)||(10020-10088)


Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 156 - 502
Target Start/End: Original strand, 3762512 - 3762858
Alignment:
Q  156 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  3762512 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactaccattatactttccttcaatgaaagc 3762611  T
Q  256 aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa 355  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  3762612 aaaattcactgtcataagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagctcttccaacaagtttagaactcagttcgggtcctaaa 3762711  T
Q  356 gtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttat 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3762712 gtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttat 3762811  T
Q  456 ttccacttagtatgtcgtgccagtagaatctaaaatggcttagtttt 502  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  3762812 ttccacttagtatgtcatgccagtagaatctaaaatggcttagtttt 3762858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 156 - 391
Target Start/End: Original strand, 3776593 - 3776828
Alignment:
Q  156 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc 255  Q
    |||| ||||||||||||||||| ||||||||||||||| ||||  |||||||||||||||||||||| ||||| |||||||||||||||||||| |||||    
T  3776593 cactaccaccaacaacaggcatttccctaaccttattacgagcatgattcctccccaagatagtaatggtactaccattatactttccttcaatgaaagc 3776692  T
Q  256 aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa 355  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||| ||| |||||||||    
T  3776693 aaaattcattgtcataagaaaacctatttcttcctgtgaagcagatgcatagaatccttgagctctaccaacaagtttagaactcaattcgggtcctaaa 3776792  T
Q  356 gtcaaagggttgtcaatcatgcggactaaaccaaaa 391  Q
    || |||||||||||||||||||  ||||||||||||    
T  3776793 gttaaagggttgtcaatcatgctaactaaaccaaaa 3776828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 156 - 393
Target Start/End: Original strand, 3780906 - 3781143
Alignment:
Q  156 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc 255  Q
    |||| |||||||||||||||||||||||||||  |||||  || ||||||||||| | |||||||| |||||| |||||||||||||||||||| |||||    
T  3780906 cactaccaccaacaacaggcatctccctaaccaaattaatggcaggattcctccctacgatagtaagagtactaccattatactttccttcaatgaaagc 3781005  T
Q  256 aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa 355  Q
    |||||||||||||| ||||||||||| |||||| ||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  3781006 aaaattcattgtcataagaaaacctagttcttcttgtgaagcagatgcatagaatccttgagctcttccaacaagcttagaactcagttctggtcctaaa 3781105  T
Q  356 gtcaaagggttgtcaatcatgcggactaaaccaaaagc 393  Q
    || ||||||||||||||||||   || |||||||||||    
T  3781106 gttaaagggttgtcaatcatgttaaccaaaccaaaagc 3781143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 161 - 498
Target Start/End: Original strand, 3745721 - 3746052
Alignment:
Q  161 ccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaat 260  Q
    |||||||||| |||||| |||||||||||||||||||| | ||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||     
T  3745721 ccaccaacaataggcatttccctaaccttattaagagcagaatttctccccaagatagtaatagtactcccattatactttccttcaatgaaagcaaaag 3745820  T
Q  261 tcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaa 360  Q
    |||| | ||  |  ||||  |  || |||| ||||||||||||||| || |||||||||||||||||||| |||||||||| || |||||||||||| ||    
T  3745821 tcatagccatgaacaaactaaactcatcctttgatgcagatgcatacaacccttgagcttttccaacaagcttagaactcatttttggtcctaaagttaa 3745920  T
Q  361 agggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttatttcca 460  Q
    |||||||||||| |||  |||||||||||||| | ||      |||| || ||| ||||||||| || | |||| ||||||||  |||||||| ||||||    
T  3745921 agggttgtcaataatgttgactaaaccaaaagaagta------gttgtgtttagcttcaatggtagtggtacaactgtaattgaagtagggttttttcca 3746014  T
Q  461 cttagtatgtcgtgccagtagaatctaaaatggcttag 498  Q
    || |  ||||| |||||  ||||||| ||||| |||||    
T  3746015 ctcatgatgtcatgccaaaagaatctgaaatgacttag 3746052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 156 - 502
Target Start/End: Original strand, 3755400 - 3755740
Alignment:
Q  156 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc 255  Q
    |||| |||||||  ||||||||||| ||||| |||| || | | | |||||| ||||| |||||||  |||||||||||||||||||||||| | |||||    
T  3755400 cactaccaccaatcacaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgtacttccattatactttccttcagtaaaagc 3755499  T
Q  256 aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa 355  Q
    ||||||||| | || ||| ||| | | ||| || |   ||||||||||||||||||||||||||||||||||||  |||||| |||  | ||||||||||    
T  3755500 aaaattcatagccataagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttccaacaatcttagaattcaactgtggtcctaaa 3755599  T
Q  356 gtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttat 455  Q
    || ||||||||||| |||||||||||| ||||||| ||| |      |||||||| |||||||| ||||||| | |||| || || ||  |||||||| |    
T  3755600 gttaaagggttgtcgatcatgcggactgaaccaaaggcagt------ggttgagtttagtttcattggtggtgggacaactgcaactgaagtagggtttt 3755693  T
Q  456 ttccacttagtatgtcgtgccagtagaatctaaaatggcttagtttt 502  Q
    ||||||| | ||||||||||||||||||||| ||||| |||||||||    
T  3755694 ttccactcactatgtcgtgccagtagaatctgaaatgacttagtttt 3755740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 156 - 502
Target Start/End: Original strand, 3751533 - 3751873
Alignment:
Q  156 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc 255  Q
    |||| ||||||| || ||||||||| ||| ||||||||| | | | ||||||||||||||||||||| ||||| |||||||||||||||||||| |||||    
T  3751533 cactaccaccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatactttccttcaatgaaagc 3751632  T
Q  256 aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa 355  Q
    ||| ||||| | ||  |||||||| |  || || |||||||||||||||||||| |||||||||||||||||||| |||||||||| || |||||||| |    
T  3751633 aaagttcatagccatgagaaaaccaaaatcatcttgtgatgcagatgcatagaaaccttgagcttttccaacaagcttagaactcaattgtggtcctata 3751732  T
Q  356 gtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttat 455  Q
    ||||||||||  |||| ||||  |||| ||||||||    ||||   ||||| || ||| |||||||||||| |||||||||||||||  || || || |    
T  3751733 gtcaaagggtcatcaaacatgttgactgaaccaaaa----taag--tggttgtgtttagcttcaatggtggtggaacaattgtaattgcagtgggatttt 3751826  T
Q  456 ttccacttagtatgtcgtgccagtagaatctaaaatggcttagtttt 502  Q
    | ||||| |  || || ||||| |||||||| ||||| |||||||||    
T  3751827 tcccactcaagatatcatgccaatagaatctgaaatgacttagtttt 3751873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 156 - 390
Target Start/End: Original strand, 3766928 - 3767162
Alignment:
Q  156 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc 255  Q
    |||| |||||||  ||||||||||| ||||| |||| || | | | |||||| ||||| |||||||  |||||||||||||||||||||||| | |||||    
T  3766928 cactaccaccaatcacaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgtacttccattatactttccttcagtaaaagc 3767027  T
Q  256 aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa 355  Q
    ||||||||| | || ||| ||| | | ||| || |   ||||||||||||||||||||||||||||||||||||  |||||| |||  | ||||||||||    
T  3767028 aaaattcatagccataagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttccaacaatcttagaattcaactgtggtcctaaa 3767127  T
Q  356 gtcaaagggttgtcaatcatgcggactaaaccaaa 390  Q
    || ||||||||||| |||||||||||| |||||||    
T  3767128 gttaaagggttgtcgatcatgcggactgaaccaaa 3767162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 302 - 502
Target Start/End: Original strand, 3771304 - 3771498
Alignment:
Q  302 gcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggc 401  Q
    |||| ||| ||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| |         
T  3771304 gcatcgaacccttgagattttccaacaagcttagaactcagttctggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaagcagt----- 3771398  T
Q  402 cggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttatttccacttagtatgtcgtgccagtagaatctaaaatggcttagttt 501  Q
     ||||| || |||||||| ||||||| |||||||| | |  |  | |||||| ||||||||   ||| ||||||||||||||||| ||||| ||||||||    
T  3771399 -ggttgtgtttagtttcattggtggtggaacaattattaccgaaggagggttttttccactcgctatctcgtgccagtagaatctgaaatgacttagttt 3771497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 3789113 - 3789175
Alignment:
Q  215 atagtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaa 277  Q
    |||||||| || |||||||||||||||||||||| ||||||||| |||||  ||| |||||||    
T  3789113 atagtaatggtgcttccattatactttccttcaaacaaagcaaagttcataatcataagaaaa 3789175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 277
Target Start/End: Original strand, 3845060 - 3845128
Alignment:
Q  209 cccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaa 277  Q
    |||||||||||||| || ||||||||||| || |||||||  || |||||||||||| ||| |||||||    
T  3845060 cccaagatagtaattgtgcttccattatatttcccttcaaataatgcaaaattcattatcataagaaaa 3845128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 202 - 264
Target Start/End: Original strand, 3770737 - 3770799
Alignment:
Q  202 attcctccccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaattcat 264  Q
    |||||| ||||| |||||||   ||||||||||||||||||||||| | ||| ||||||||||    
T  3770737 attccttcccaaaatagtaagtttacttccattatactttccttcagtaaaaacaaaattcat 3770799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 3851509 - 3851554
Alignment:
Q  213 agatagtaatagtacttccattatactttccttcaatcaaagcaaa 258  Q
    |||||||||| ||||| ||||||||||||||||||| ||| |||||    
T  3851509 agatagtaatggtactcccattatactttccttcaaacaaggcaaa 3851554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 147
Target Start/End: Complemental strand, 49082812 - 49082741
Alignment:
Q  70 gttggattggaatataagtaagtatattgacattgacatacagtagtatttcttctccacacatgctgccacaggttc 147  Q
    ||||||||||||||||| |||||||||||||||      |||||||||||||||||||||||||||||||||| ||||    
T  49082812 gttggattggaatataaataagtatattgacat------acagtagtatttcttctccacacatgctgccacaagttc 49082741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 172 - 498
Target Start/End: Complemental strand, 25985591 - 25985274
Alignment:
Q  172 aggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtcaca 271  Q
    |||||| ||||||||||||| |  | | |||||||||||||| ||||| || || || ||||| ||||| |||||||| | |||||||||||| | ||      
T  25985591 aggcatttccctaaccttatcagaaacaggattcctccccaaaatagtgatggtgctaccattgtacttcccttcaattatagcaaaattcatagccatg 25985492  T
Q  272 agaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaaagggttgtcaa 371  Q
    | ||   |||  ||    |||||||  || |||||||||||||| ||||||||||| | ||| ||||||| ||  |||||||| || |||||||| ||||    
T  25985491 ataaggtctacctcactttgtgatgttgaggcatagaatccttgtgcttttccaaccaatttggaactcaattgaggtcctaaggttaaagggttctcaa 25985392  T
Q  372 tcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttatttccacttagtatgtc 471  Q
    |||||   ||||||||||||||| |      ||||||||    |||||| |||||| |||||||||  ||||  | |||||| |||||||| | ||||||    
T  25985391 tcatgttaactaaaccaaaagcagt------ggttgagt---ttttcaaaggtggtggaacaattggtattgaagaagggttgtttccactaactatgtc 25985301  T
Q  472 gtgccagtagaatctaaaatggcttag 498  Q
     ||||| |||||| | |||||||||||    
T  25985300 atgccaatagaattttaaatggcttag 25985274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 277
Target Start/End: Complemental strand, 10088 - 10020
Alignment:
Q  209 cccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaa 277  Q
    |||||||||||||| || ||||||||||| || |||||||  || |||||||||||| ||| |||||||    
T  10088 cccaagatagtaattgtgcttccattatatttcccttcaaataatgcaaaattcattatcataagaaaa 10020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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