View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0113_low_17 (Length: 380)
Name: NF0113_low_17
Description: NF0113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0113_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 30 - 370
Target Start/End: Original strand, 16911238 - 16911578
Alignment:
| Q |
30 |
gatggaagaggagctgatgttaccattgctagtggtgctggtattactatccagttcatcgagaatgtgatcatccatggaatcaaaatttttgacatcg |
129 |
Q |
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| T |
16911238 |
gatggaagaggagctgatgttaccattgctagtggtgctggtattactatccagttcatcgagaatgtgatcatccatggaatcaaaatttttgacatcg |
16911337 |
T |
|
| Q |
130 |
tggttggaagtggtggacttattagagatggtcaggaccattttggtcaaaggactatgagtgatggtgatggaatttcaatttttggctctagcaatat |
229 |
Q |
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| T |
16911338 |
tggttggaagtggtggacttattagagatggtcaggaccattttggtcaaaggactatgagtgatggtgatggaatttcaatttttggctctagcaatat |
16911437 |
T |
|
| Q |
230 |
ttggattgaccatgtttccatgagaaactgtagggatggactagttgatgccattatgggatccactgctattaccatctccaatagccatttcacagat |
329 |
Q |
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| T |
16911438 |
ttggattgaccatgtttccatgagaaactgtagagatggactagttgatgccattatgggatccactgctattaccatctccaatagccatttcacagat |
16911537 |
T |
|
| Q |
330 |
cacaacgaggtaattagtaattaattcaatagttacctatg |
370 |
Q |
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| T |
16911538 |
cacaacgaggtaattagtaattaattcgatagttacttatg |
16911578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 30 - 370
Target Start/End: Original strand, 16915643 - 16915983
Alignment:
| Q |
30 |
gatggaagaggagctgatgttaccattgctagtggtgctggtattactatccagttcatcgagaatgtgatcatccatggaatcaaaatttttgacatcg |
129 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
16915643 |
gatggacgaggagctgatgttaccattgctaatggtgctggtattactatccagttcatcgagaatgtgatcatccatgggatcaaaatttatgacatta |
16915742 |
T |
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| Q |
130 |
tggttggaagtggtggacttattagagatggtcaggaccattttggtcaaaggactatgagtgatggtgatggaatttcaatttttggctctagcaatat |
229 |
Q |
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|||||||||||||||||||| |||||||| || ||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||| ||| |||| |
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| T |
16915743 |
tggttggaagtggtggacttgttagagatagtgaggaccattatggtctaaggactattagtgatggtgatggaatttcaatttttggctcaagccatat |
16915842 |
T |
|
| Q |
230 |
ttggattgaccatgtttccatgagaaactgtagggatggactagttgatgccattatgggatccactgctattaccatctccaatagccatttcacagat |
329 |
Q |
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|||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16915843 |
ttggattgaccatgtttccatgagaaactgcagagatggactcattgatgccattatgggatccactgctattaccatctccaatagccatttcacagat |
16915942 |
T |
|
| Q |
330 |
cacaacgaggtaattagtaattaattcaatagttacctatg |
370 |
Q |
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||||||||||||||||||||||||||| |||||||| |||| |
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| T |
16915943 |
cacaacgaggtaattagtaattaattcgatagttacttatg |
16915983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 188 - 340
Target Start/End: Complemental strand, 25007205 - 25007053
Alignment:
| Q |
188 |
gagtgatggtgatggaatttcaatttttggctctagcaatatttggattgaccatgtttccatgagaaactgtagggatggactagttgatgccattatg |
287 |
Q |
| |
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||||||||||||||| ||||| || ||||| |||| ||| |||||||||| ||||||||||||||||| |||| ||||| | ||||||| || ||| |
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| T |
25007205 |
gagtgatggtgatggtatttccatctttggtgctagtaatgtttggattgatcatgtttccatgagaaattgtactgatggtttgattgatgctataatg |
25007106 |
T |
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| Q |
288 |
ggatccactgctattaccatctccaatagccatttcacagatcacaacgaggt |
340 |
Q |
| |
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|| |||||||||||||||||||| || || || ||||| || ||||| ||||| |
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| T |
25007105 |
ggttccactgctattaccatctctaacagtcacttcactgaccacaatgaggt |
25007053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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