View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0113_low_18 (Length: 374)
Name: NF0113_low_18
Description: NF0113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0113_low_18 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 30 - 366
Target Start/End: Original strand, 27328721 - 27329057
Alignment:
| Q |
30 |
tgactgtccggtgatgtctcaagatgaagggaaacaagttcttggtaggtcttgtaacgaagctgatggagatgaatcaagtggtgatgatggttcccaa |
129 |
Q |
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| T |
27328721 |
tgactgtcctgtgatgtctcaagatgaagggaaacaagttcttggtaggtcttgtaatgaagctgatggagatgaatcaagtggtgatgatggttcccaa |
27328820 |
T |
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| Q |
130 |
atgttggattgtgcaagtggagagccttctattaaaggtctaaatccaaagaaaaggaaaagaaatggacaggtatatttctctgagttgtattttttag |
229 |
Q |
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| T |
27328821 |
atgttggattgtgcaagtggagaaccttctattaaaggtctaaatccaaagaaaaggaaaagaaatggacaggtatatttctctgagttgtattttttag |
27328920 |
T |
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| Q |
230 |
tatagttgatactgtggttatcaatttgaggttcaaatcgtgattcggacgatctattttctgaatcgtggattgaatcttttattatgaatcgtaagat |
329 |
Q |
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| T |
27328921 |
tatagttgatactgtggttatcaatttgaggttcaaatcgtgattcggacgatctattttctgaatcgtggattgaatcttttattatgaatcgtaagat |
27329020 |
T |
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| Q |
330 |
gaattaccaataaaatatgaattttttaagtataatc |
366 |
Q |
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| T |
27329021 |
gaattaccaataaaatatgaattttgtaagtaaaatc |
27329057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 21358460 - 21358401
Alignment:
| Q |
145 |
agtggagagccttctattaaaggtctaaatccaaagaaaaggaaaagaaatggacaggta |
204 |
Q |
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| T |
21358460 |
agtggagagccttctatgaaaggactaaactcgaagaaaaggaaaagaagtggacaggta |
21358401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 343
Target Start/End: Complemental strand, 161673 - 161615
Alignment:
| Q |
283 |
ctattttctgaatcgtggattgaatcttttattatgaatcgtaagatgaattaccaataaa |
343 |
Q |
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||||||||||||| ||| |||||||||| ||| ||||||||||||| ||||||||||||| |
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| T |
161673 |
ctattttctgaattgtgaattgaatctt--attgtgaatcgtaagataaattaccaataaa |
161615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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