View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0113_low_19 (Length: 330)
Name: NF0113_low_19
Description: NF0113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0113_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 79 - 153
Target Start/End: Complemental strand, 4142314 - 4142240
Alignment:
| Q |
79 |
agaacacaaagtagacaacggtaccataaagagaccagctgcagcatgagcagcactgtcatatagaaaataagt |
153 |
Q |
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| T |
4142314 |
agaacacaaagtcgacatcagtaccataaagagaccagctgcaacacgagcagcactgtcatatagaaaacaagt |
4142240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 4141880 - 4141824
Alignment:
| Q |
237 |
aaattgtggatgcaatgaattatgatcattgccgcttaatccatagcctcctcctcc |
293 |
Q |
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| T |
4141880 |
aaattgtggatgcaatgaattatgatcatcgccgcttaatccataacctactcctcc |
4141824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 4141998 - 4141956
Alignment:
| Q |
197 |
aagtgtaattcttcgatcattcggagcagcttatttctgtaaa |
239 |
Q |
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| T |
4141998 |
aagtgtaattctttgatcatttggagctgcttatttctgtaaa |
4141956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 3854777 - 3854833
Alignment:
| Q |
237 |
aaattgtggatgcaatgaattatgatcattgccgcttaatccatagcctcctcctcc |
293 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
3854777 |
aaattgtggatgcaatgaattatgatcatcaacgcttgatccatagcctcctcctcc |
3854833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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