View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0113_low_20 (Length: 314)

Name: NF0113_low_20
Description: NF0113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0113_low_20
NF0113_low_20
[»] chr7 (10 HSPs)
chr7 (244-310)||(5098579-5098645)
chr7 (160-211)||(46280289-46280340)
chr7 (160-199)||(9050649-9050688)
chr7 (161-211)||(20526448-20526498)
chr7 (161-211)||(33678782-33678832)
chr7 (161-199)||(47130803-47130841)
chr7 (162-211)||(14768125-14768174)
chr7 (163-203)||(19022605-19022645)
chr7 (159-211)||(37064480-37064532)
chr7 (160-208)||(39279967-39280015)
[»] chr3 (16 HSPs)
chr3 (160-203)||(33972751-33972794)
chr3 (160-211)||(30443895-30443946)
chr3 (160-203)||(35696248-35696291)
chr3 (161-203)||(24085356-24085398)
chr3 (136-211)||(402535-402610)
chr3 (136-199)||(21367681-21367744)
chr3 (146-210)||(32582747-32582810)
chr3 (136-203)||(39980739-39980806)
chr3 (160-203)||(901934-901977)
chr3 (149-203)||(36631058-36631111)
chr3 (161-211)||(41633362-41633412)
chr3 (161-211)||(50600196-50600246)
chr3 (162-211)||(44747427-44747476)
chr3 (160-208)||(3845579-3845627)
chr3 (163-211)||(46886712-46886760)
chr3 (139-211)||(52619005-52619076)
[»] chr5 (11 HSPs)
chr5 (160-209)||(12857722-12857771)
chr5 (136-199)||(39105478-39105541)
chr5 (161-204)||(1465038-1465081)
chr5 (161-211)||(4014442-4014492)
chr5 (160-209)||(12857355-12857404)
chr5 (162-211)||(17560433-17560482)
chr5 (160-199)||(7706015-7706054)
chr5 (161-199)||(7674662-7674700)
chr5 (161-211)||(42582914-42582964)
chr5 (162-203)||(43300888-43300929)
chr5 (160-200)||(42500258-42500298)
[»] chr1 (21 HSPs)
chr1 (161-211)||(15784331-15784381)
chr1 (161-211)||(7137016-7137066)
chr1 (146-208)||(27820341-27820402)
chr1 (160-209)||(37631576-37631625)
chr1 (160-203)||(5709637-5709680)
chr1 (160-211)||(24915068-24915119)
chr1 (136-194)||(6292512-6292569)
chr1 (149-203)||(14576661-14576713)
chr1 (161-211)||(34290238-34290288)
chr1 (161-211)||(35179141-35179191)
chr1 (138-204)||(37593680-37593745)
chr1 (149-203)||(49938757-49938810)
chr1 (134-199)||(10199400-10199464)
chr1 (138-199)||(19389915-19389976)
chr1 (134-199)||(41195185-41195249)
chr1 (161-210)||(45975693-45975742)
chr1 (146-199)||(51695499-51695551)
chr1 (136-199)||(7941620-7941683)
chr1 (160-204)||(24334202-24334246)
chr1 (161-201)||(51190860-51190900)
chr1 (160-212)||(51929556-51929608)
[»] chr8 (10 HSPs)
chr8 (160-211)||(18133658-18133709)
chr8 (154-211)||(38874648-38874704)
chr8 (161-211)||(1930037-1930087)
chr8 (161-211)||(11795094-11795144)
chr8 (137-203)||(20672760-20672825)
chr8 (161-211)||(27028833-27028883)
chr8 (161-211)||(38602335-38602385)
chr8 (161-203)||(43504761-43504803)
chr8 (169-197)||(10358594-10358622)
chr8 (163-199)||(27754418-27754454)
[»] chr2 (17 HSPs)
chr2 (160-199)||(12464490-12464529)
chr2 (160-203)||(43279546-43279589)
chr2 (161-211)||(42621393-42621443)
chr2 (166-211)||(6167306-6167351)
chr2 (161-197)||(1893299-1893335)
chr2 (167-211)||(27695619-27695663)
chr2 (161-199)||(680517-680555)
chr2 (169-211)||(16353863-16353905)
chr2 (161-211)||(16451120-16451170)
chr2 (161-211)||(26143658-26143708)
chr2 (162-211)||(33931589-33931638)
chr2 (159-200)||(42419819-42419860)
chr2 (161-197)||(5426090-5426126)
chr2 (160-200)||(12194965-12195005)
chr2 (136-211)||(18066130-18066205)
chr2 (163-203)||(39073709-39073749)
chr2 (160-204)||(42868483-42868527)
[»] scaffold0147 (1 HSPs)
scaffold0147 (161-203)||(23641-23683)
[»] chr4 (13 HSPs)
chr4 (161-199)||(825508-825546)
chr4 (160-203)||(26881-26924)
chr4 (146-187)||(2703052-2703093)
chr4 (154-199)||(20031763-20031808)
chr4 (162-211)||(35571650-35571699)
chr4 (162-199)||(52315216-52315253)
chr4 (160-200)||(2244064-2244104)
chr4 (140-184)||(9841093-9841137)
chr4 (136-199)||(17822858-17822921)
chr4 (160-200)||(25904240-25904280)
chr4 (129-196)||(42121505-42121570)
chr4 (167-199)||(42685438-42685470)
chr4 (160-200)||(50662755-50662795)
[»] chr6 (2 HSPs)
chr6 (161-199)||(835267-835305)
chr6 (161-198)||(31624959-31624996)


Alignment Details
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 244 - 310
Target Start/End: Complemental strand, 5098645 - 5098579
Alignment:
Q  244 tccactaatacacgtgagtttaatgcaccctctcacctaacaaaatgaatggttcactgaattgcat 310  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5098645 tccactaatacacgtgagtttaatgcaccctctcatctaacaaaatgaatggttcactgaattgcat 5098579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 46280289 - 46280340
Alignment:
Q  160 tttttcagcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    ||||||||| |||||||| ||||||||||| ||||||||||||| |||||||    
T  46280289 tttttcagcctattttcataagttctccaatatagcttataaaaacagctta 46280340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 9050688 - 9050649
Alignment:
Q  160 tttttcagcttattttcacaagttctccaaaatagcttat 199  Q
    |||||||||||||||||||||||||||||| |||| ||||    
T  9050688 tttttcagcttattttcacaagttctccaagatagtttat 9050649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 20526498 - 20526448
Alignment:
Q  161 ttttcagcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    |||| ||||||||||||  |||||||||||||||||||| ||| |||||||    
T  20526498 tttttagcttattttcattagttctccaaaatagcttatgaaaacagctta 20526448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 33678832 - 33678782
Alignment:
Q  161 ttttcagcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    |||||| |||||||||||||||| ||||| ||||||||| ||| |||||||    
T  33678832 ttttcaacttattttcacaagttttccaagatagcttatgaaaacagctta 33678782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 47130803 - 47130841
Alignment:
Q  161 ttttcagcttattttcacaagttctccaaaatagcttat 199  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  47130803 ttttcaacttattttcacaagttctccaagatagcttat 47130841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 14768174 - 14768125
Alignment:
Q  162 tttcagcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    |||||||||||||||| |||||||| || ||| ||||||||| |||||||    
T  14768174 tttcagcttattttcaaaagttctcgaagataacttataaaaacagctta 14768125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 19022605 - 19022645
Alignment:
Q  163 ttcagcttattttcacaagttctccaaaatagcttataaaa 203  Q
    |||| |||||||||| ||||||||||| |||||||||||||    
T  19022605 ttcaacttattttcataagttctccaatatagcttataaaa 19022645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 37064480 - 37064532
Alignment:
Q  159 atttttcagcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    ||||||||||||||||||| |||| ||| |||||||||||  ||| |||||||    
T  37064480 atttttcagcttattttcataagtcctctaaaatagcttacgaaaacagctta 37064532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 39280015 - 39279967
Alignment:
Q  160 tttttcagcttattttcacaagttctccaaaatagcttataaaatcagc 208  Q
    |||||||||||||||||| ||||||||||| |||  |||| ||||||||    
T  39280015 tttttcagcttattttcaaaagttctccaagataatttatgaaatcagc 39279967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 160 - 203
Target Start/End: Original strand, 33972751 - 33972794
Alignment:
Q  160 tttttcagcttattttcacaagttctccaaaatagcttataaaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  33972751 tttttcagcttattttcacaagttctccaaaatagcttataaaa 33972794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 30443946 - 30443895
Alignment:
Q  160 tttttcagcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    |||||||||||||||||| ||||||||||| |||| |||||||| |||||||    
T  30443946 tttttcagcttattttcataagttctccaatatagtttataaaaacagctta 30443895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 35696291 - 35696248
Alignment:
Q  160 tttttcagcttattttcacaagttctccaaaatagcttataaaa 203  Q
    ||||||| |||||||||||||||||||||| |||||||||||||    
T  35696291 tttttcaacttattttcacaagttctccaatatagcttataaaa 35696248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 24085356 - 24085398
Alignment:
Q  161 ttttcagcttattttcacaagttctccaaaatagcttataaaa 203  Q
    ||||||||||||||||||||||||||||| |||||||| ||||    
T  24085356 ttttcagcttattttcacaagttctccaagatagcttacaaaa 24085398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 211
Target Start/End: Original strand, 402535 - 402610
Alignment:
Q  136 agcttatgac-ttgttcaaaagctatttttcagcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    |||||||||| ||||||| ||||| |||| ||||||| ||||||||||||| ||| |||| |||||||| |||||||    
T  402535 agcttatgacattgttcataagctgtttt-cagcttaatttcacaagttcttcaagatagattataaaaacagctta 402610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 21367744 - 21367681
Alignment:
Q  136 agcttatgac-ttgttcaaaagctatttttcagcttattttcacaagttctccaaaatagcttat 199  Q
    |||||||||| ||||||| ||||| |||| ||||||||||||| ||||||||||| |||||||||    
T  21367744 agcttatgacattgttcacaagctgtttt-cagcttattttcataagttctccaagatagcttat 21367681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 32582810 - 32582747
Alignment:
Q  146 ttgttcaaaagctatttttcagcttattttcacaagttctccaaaatagcttataaaatcagctt 210  Q
    ||||||||||| | ||||||| ||||||| || ||||||||||||||||||||| ||| ||||||    
T  32582810 ttgttcaaaagat-tttttcaacttatttccataagttctccaaaatagcttatgaaaacagctt 32582747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 39980806 - 39980739
Alignment:
Q  136 agcttatgacttgtt-caaaagctatttttcagcttattttcacaagttctccaaaatagcttataaaa 203  Q
    ||||||||||| ||| || ||||| ||||||| |||||||||| ||||||||||| |||||||||||||    
T  39980806 agcttatgactggtttcataagct-tttttcaacttattttcataagttctccaatatagcttataaaa 39980739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 901977 - 901934
Alignment:
Q  160 tttttcagcttattttcacaagttctccaaaatagcttataaaa 203  Q
    ||||||| |||||||||| ||||||||||| |||||||||||||    
T  901977 tttttcaacttattttcataagttctccaatatagcttataaaa 901934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 36631058 - 36631111
Alignment:
Q  149 ttcaaaagctatttttcagcttattttcacaagttctccaaaatagcttataaaa 203  Q
    |||||||||| |||||| ||||||||||| ||||||||||| |||||| ||||||    
T  36631058 ttcaaaagct-tttttctgcttattttcataagttctccaatatagctcataaaa 36631111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 41633412 - 41633362
Alignment:
Q  161 ttttcagcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    ||||||||||||||||| ||| |||||||||||||| || ||| |||||||    
T  41633412 ttttcagcttattttcataagctctccaaaatagctgatgaaaacagctta 41633362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 50600196 - 50600246
Alignment:
Q  161 ttttcagcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    ||||||||||||||||| ||||||||||| |||||| || ||| |||||||    
T  50600196 ttttcagcttattttcataagttctccaatatagctgatgaaaacagctta 50600246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 44747427 - 44747476
Alignment:
Q  162 tttcagcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    |||||||||||||||| ||||| ||||| ||||||||| ||| |||||||    
T  44747427 tttcagcttattttcataagttttccaagatagcttatgaaaacagctta 44747476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 3845579 - 3845627
Alignment:
Q  160 tttttcagcttattttcacaagttctccaaaatagcttataaaatcagc 208  Q
    |||||||||||||||||| ||||||||||| ||| ||||| ||| ||||    
T  3845579 tttttcagcttattttcataagttctccaagataacttatgaaaacagc 3845627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 46886712 - 46886760
Alignment:
Q  163 ttcagcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    ||||| ||||||||| ||||||||||| ||||||||| ||| |||||||    
T  46886712 ttcaggttattttcaaaagttctccaagatagcttatgaaaacagctta 46886760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 52619076 - 52619005
Alignment:
Q  139 ttatgacttgttcaaaagctatttttcagcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    ||||||| |||||| |||||||||| || |||||||||||||| ||| ||| ||||||| | ||| |||||||    
T  52619076 ttatgacatgttcataagctatttt-caccttattttcacaagctcttcaagatagcttgtgaaaacagctta 52619005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 12857722 - 12857771
Alignment:
Q  160 tttttcagcttattttcacaagttctccaaaatagcttataaaatcagct 209  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  12857722 tttttcagcttattttcataagttctccaatatagcttataaaatcagct 12857771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 39105541 - 39105478
Alignment:
Q  136 agcttatgac-ttgttcaaaagctatttttcagcttattttcacaagttctccaaaatagcttat 199  Q
    |||||||||| ||||||| ||||||||||| |||||||||||| ||||||||||| |||||||||    
T  39105541 agcttatgacattgttcataagctattttt-agcttattttcataagttctccaagatagcttat 39105478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 1465038 - 1465081
Alignment:
Q  161 ttttcagcttattttcacaagttctccaaaatagcttataaaat 204  Q
    |||||||||||||||||||||| |||||| ||||||||||||||    
T  1465038 ttttcagcttattttcacaagtcctccaagatagcttataaaat 1465081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 4014442 - 4014492
Alignment:
Q  161 ttttcagcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    ||||||||||||||||| ||||||||||| ||||||||| ||| |||||||    
T  4014442 ttttcagcttattttcataagttctccaagatagcttatgaaaacagctta 4014492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 12857355 - 12857404
Alignment:
Q  160 tttttcagcttattttcacaagttctccaaaatagcttataaaatcagct 209  Q
    ||||||||||||||||   ||||||||||| |||||||||||||||||||    
T  12857355 tttttcagcttatttttgtaagttctccaatatagcttataaaatcagct 12857404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 17560433 - 17560482
Alignment:
Q  162 tttcagcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    ||||||||||||||||||||||||| || ||| ||||||||| |||||||    
T  17560433 tttcagcttattttcacaagttctcgaagataacttataaaaacagctta 17560482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 199
Target Start/End: Original strand, 7706015 - 7706054
Alignment:
Q  160 tttttcagcttattttcacaagttctccaaaatagcttat 199  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  7706015 tttttcggcttattttcacaagttctccaatatagcttat 7706054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 7674700 - 7674662
Alignment:
Q  161 ttttcagcttattttcacaagttctccaaaatagcttat 199  Q
    |||||||||||||||||||| |||||||| |||||||||    
T  7674700 ttttcagcttattttcacaaattctccaagatagcttat 7674662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 42582964 - 42582914
Alignment:
Q  161 ttttcagcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    |||| |||||||||||| ||||||||||| |||||||| |||| |||||||    
T  42582964 ttttgagcttattttcataagttctccaatatagcttacaaaaacagctta 42582914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 43300929 - 43300888
Alignment:
Q  162 tttcagcttattttcacaagttctccaaaatagcttataaaa 203  Q
    |||||||||||||||| ||||||||||| |||||||| ||||    
T  43300929 tttcagcttattttcataagttctccaagatagcttacaaaa 43300888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 42500258 - 42500298
Alignment:
Q  160 tttttcagcttattttcacaagttctccaaaatagcttata 200  Q
    ||||||| |||||||||| ||||||||||| ||||||||||    
T  42500258 tttttcaacttattttcataagttctccaatatagcttata 42500298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 15784381 - 15784331
Alignment:
Q  161 ttttcagcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    |||| |||||||||||||||||||||||| ||||||||||||| |||||||    
T  15784381 tttttagcttattttcacaagttctccaagatagcttataaaaccagctta 15784331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 7137016 - 7137066
Alignment:
Q  161 ttttcagcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    ||||||||||||||||| ||||||||||| ||||||||| ||| |||||||    
T  7137016 ttttcagcttattttcataagttctccaagatagcttatgaaaacagctta 7137066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 27820341 - 27820402
Alignment:
Q  146 ttgttcaaaagctatttttcagcttattttcacaagttctccaaaatagcttataaaatcagc 208  Q
    ||||||| |||||||||| ||||||||||||| || |||||||| ||||||||||||| ||||    
T  27820341 ttgttcataagctatttt-cagcttattttcataaattctccaagatagcttataaaaacagc 27820402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 37631576 - 37631625
Alignment:
Q  160 tttttcagcttattttcacaagttctccaaaatagcttataaaatcagct 209  Q
    |||||||||||||||||| ||||||||||| |||||||| |||| |||||    
T  37631576 tttttcagcttattttcataagttctccaatatagcttacaaaaacagct 37631625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 5709680 - 5709637
Alignment:
Q  160 tttttcagcttattttcacaagttctccaaaatagcttataaaa 203  Q
    ||||||| |||||||||||||||||||||| ||||||| |||||    
T  5709680 tttttcaacttattttcacaagttctccaatatagcttctaaaa 5709637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 24915068 - 24915119
Alignment:
Q  160 tttttcagcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    ||||||| |||||||||||||||||||||| | ||||||| ||| |||||||    
T  24915068 tttttcaacttattttcacaagttctccaagacagcttatgaaaacagctta 24915119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 6292569 - 6292512
Alignment:
Q  136 agcttatgacttgttcaaaagctatttttcagcttattttcacaagttctccaaaatag 194  Q
    |||||||||| |||||| ||||| |||| ||||||||||||| ||| ||||||||||||    
T  6292569 agcttatgacatgttcataagctgtttt-cagcttattttcataagctctccaaaatag 6292512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 14576661 - 14576713
Alignment:
Q  149 ttcaaaagctatttttcagcttattttcacaagttctccaaaatagcttataaaa 203  Q
    |||||||||| |||||||||||||||||| |||||||| || |||||||||||||    
T  14576661 ttcaaaagct-tttttcagcttattttca-aagttctctaatatagcttataaaa 14576713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 34290288 - 34290238
Alignment:
Q  161 ttttcagcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    ||||||||||||||||| ||||||| ||| ||||||||| ||| |||||||    
T  34290288 ttttcagcttattttcataagttcttcaagatagcttatgaaaacagctta 34290238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 35179191 - 35179141
Alignment:
Q  161 ttttcagcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    ||||||||||||||||| |||||||||| |||| ||||| ||| |||||||    
T  35179191 ttttcagcttattttcataagttctccataataacttatgaaaacagctta 35179141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 37593680 - 37593745
Alignment:
Q  138 cttatgacttgttcaaaagctatttttcagcttattttcacaagttctccaaaatagcttataaaat 204  Q
    |||||||| |||||| ||||| |||| ||||||||||||| ||| ||| ||||||||||||| ||||    
T  37593680 cttatgacatgttcataagctgtttt-cagcttattttcataagctcttcaaaatagcttatgaaat 37593745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 49938810 - 49938757
Alignment:
Q  149 ttcaaaagctatttttcagcttattttcacaagttctccaaaatagcttataaaa 203  Q
    |||||||||| ||||||| |||||||||| |||||||| || |||||||||||||    
T  49938810 ttcaaaagct-tttttcaacttattttcataagttctctaatatagcttataaaa 49938757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 10199400 - 10199464
Alignment:
Q  134 atagcttatgacttgttcaaaagctatttttcagcttattttcacaagttctccaaaatagcttat 199  Q
    |||||||||||| |||||| ||| | |||| ||||||||||||| ||| |||| ||||||||||||    
T  10199400 atagcttatgacatgttcataagttgtttt-cagcttattttcataagctctctaaaatagcttat 10199464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 19389976 - 19389915
Alignment:
Q  138 cttatgacttgttcaaaagctatttttcagcttattttcacaagttctccaaaatagcttat 199  Q
    |||||||  |||||| ||| | ||||| |||||||||||||||| ||||||| |||||||||    
T  19389976 cttatgatatgttcataagttgttttttagcttattttcacaagctctccaagatagcttat 19389915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 41195185 - 41195249
Alignment:
Q  134 atagcttatgacttgttcaaaagctatttttcagcttattttcacaagttctccaaaatagcttat 199  Q
    |||||||||||| | || | ||||| |||||||||||||||||| ||||||||||| |||| ||||    
T  41195185 atagcttatgacattttaataagct-tttttcagcttattttcataagttctccaagatagtttat 41195249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 45975742 - 45975693
Alignment:
Q  161 ttttcagcttattttcacaagttctccaaaatagcttataaaatcagctt 210  Q
    ||||||||||||||||| || |||||||| ||||||||| ||| ||||||    
T  45975742 ttttcagcttattttcataaattctccaagatagcttatgaaaacagctt 45975693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 51695499 - 51695551
Alignment:
Q  146 ttgttcaaaagctatttttcagcttattttcacaagttctccaaaatagcttat 199  Q
    ||||||| |||||||||| ||||||||||||| || |||||||| |||||||||    
T  51695499 ttgttcataagctatttt-cagcttattttcataaattctccaagatagcttat 51695551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 7941683 - 7941620
Alignment:
Q  136 agcttatgac-ttgttcaaaagctatttttcagcttattttcacaagttctccaaaatagcttat 199  Q
    |||||||||| ||||||  |||||||||| || |||||||||| ||||||||| |||||||||||    
T  7941683 agcttatgacattgttccgaagctatttt-caacttattttcataagttctccgaaatagcttat 7941620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 24334246 - 24334202
Alignment:
Q  160 tttttcagcttattttcacaagttctccaaaatagcttataaaat 204  Q
    |||| ||||||||||| ||||||||||||| |||||||| |||||    
T  24334246 ttttacagcttatttttacaagttctccaagatagcttagaaaat 24334202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 51190900 - 51190860
Alignment:
Q  161 ttttcagcttattttcacaagttctccaaaatagcttataa 201  Q
    ||||||||||||||||| ||||||| ||| |||||||||||    
T  51190900 ttttcagcttattttcataagttcttcaagatagcttataa 51190860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 51929556 - 51929608
Alignment:
Q  160 tttttcagcttattttcacaagttctccaaaatagcttataaaatcagcttaa 212  Q
    ||||||| ||||||| || ||||||||||| |||| |||||||| ||||||||    
T  51929556 tttttcaacttatttccataagttctccaatatagtttataaaaacagcttaa 51929608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 18133709 - 18133658
Alignment:
Q  160 tttttcagcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    |||||||||||||||||| ||||||||||| |||| |||||||| |||||||    
T  18133709 tttttcagcttattttcataagttctccaatatagtttataaaaccagctta 18133658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 38874704 - 38874648
Alignment:
Q  154 aagctatttttcagcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    ||||||||||| |||||||||||| | ||||||||||||||||||| ||| |||||||    
T  38874704 aagctattttt-agcttattttcatatgttctccaaaatagcttatgaaaacagctta 38874648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 1930087 - 1930037
Alignment:
Q  161 ttttcagcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    ||||||||||||||||||||| || |||| ||||||||| ||| |||||||    
T  1930087 ttttcagcttattttcacaaggtcaccaagatagcttatgaaaacagctta 1930037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 11795144 - 11795094
Alignment:
Q  161 ttttcagcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    |||||||||||||| || ||| |||||| |||||||||| |||||||||||    
T  11795144 ttttcagcttatttccataagctctccataatagcttatgaaatcagctta 11795094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 20672825 - 20672760
Alignment:
Q  137 gcttatgacttgttcaaaagctatttttcagcttattttcacaagttctccaaaatagcttataaaa 203  Q
    ||||||||| |||||| ||||| |||| ||||||||||||| ||| ||||||  |||||||||||||    
T  20672825 gcttatgacatgttcataagctgtttt-cagcttattttcataagctctccaggatagcttataaaa 20672760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 27028883 - 27028833
Alignment:
Q  161 ttttcagcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    ||||||||||||||||| ||| ||||||| ||||||||| ||| |||||||    
T  27028883 ttttcagcttattttcataagctctccaagatagcttatgaaaacagctta 27028833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 38602385 - 38602335
Alignment:
Q  161 ttttcagcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    ||||| |||||||||||||| |||||||  ||||||||||||| |||||||    
T  38602385 ttttcggcttattttcacaaattctccagtatagcttataaaaacagctta 38602335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 43504803 - 43504761
Alignment:
Q  161 ttttcagcttattttcacaagttctccaaaatagcttataaaa 203  Q
    |||||||||||||| || ||||||||||| |||||||||||||    
T  43504803 ttttcagcttatttccataagttctccaagatagcttataaaa 43504761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 197
Target Start/End: Complemental strand, 10358622 - 10358594
Alignment:
Q  169 ttattttcacaagttctccaaaatagctt 197  Q
    |||||||||||||||||||||||||||||    
T  10358622 ttattttcacaagttctccaaaatagctt 10358594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 27754454 - 27754418
Alignment:
Q  163 ttcagcttattttcacaagttctccaaaatagcttat 199  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  27754454 ttcagcttattttcataagctctccaaaatagcttat 27754418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 199
Target Start/End: Original strand, 12464490 - 12464529
Alignment:
Q  160 tttttcagcttattttcacaagttctccaaaatagcttat 199  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  12464490 tttttcagcttattttcacaagttctccaagatagcttat 12464529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 203
Target Start/End: Original strand, 43279546 - 43279589
Alignment:
Q  160 tttttcagcttattttcacaagttctccaaaatagcttataaaa 203  Q
    ||||||| |||||||||||||||||||||| |||||||||||||    
T  43279546 tttttcaacttattttcacaagttctccaatatagcttataaaa 43279589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 42621393 - 42621443
Alignment:
Q  161 ttttcagcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    |||||||||||||||||||||||||||| |||| ||||| ||| |||||||    
T  42621393 ttttcagcttattttcacaagttctccagaataacttatgaaaacagctta 42621443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 6167306 - 6167351
Alignment:
Q  166 agcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    ||||||||| || ||||||||||||||||||||||||| |||||||    
T  6167306 agcttatttccataagttctccaaaatagcttataaaaacagctta 6167351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 1893299 - 1893335
Alignment:
Q  161 ttttcagcttattttcacaagttctccaaaatagctt 197  Q
    ||||||||||||||||||||||||||||| |||||||    
T  1893299 ttttcagcttattttcacaagttctccaagatagctt 1893335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 27695619 - 27695663
Alignment:
Q  167 gcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    |||||||||||||||||| |||| ||||||||||||| |||||||    
T  27695619 gcttattttcacaagttccccaatatagcttataaaaacagctta 27695663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 680555 - 680517
Alignment:
Q  161 ttttcagcttattttcacaagttctccaaaatagcttat 199  Q
    ||||||||||||||||||||||||| ||| |||||||||    
T  680555 ttttcagcttattttcacaagttcttcaagatagcttat 680517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 16353905 - 16353863
Alignment:
Q  169 ttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||    
T  16353905 ttattttcacaagatctccaagatagcttataaaaacagctta 16353863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 16451170 - 16451120
Alignment:
Q  161 ttttcagcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    |||||||||||||||||| |||||||||| ||||||||  ||| |||||||    
T  16451170 ttttcagcttattttcacgagttctccaagatagcttacgaaaacagctta 16451120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 26143658 - 26143708
Alignment:
Q  161 ttttcagcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    ||||||||||||||||| |||||||||||  |||||||| ||| |||||||    
T  26143658 ttttcagcttattttcataagttctccaagttagcttatgaaaacagctta 26143708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 33931589 - 33931638
Alignment:
Q  162 tttcagcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    ||||||||||||| ||| | |||||||||||||||||| ||| |||||||    
T  33931589 tttcagcttatttccactatttctccaaaatagcttatgaaaacagctta 33931638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 42419860 - 42419819
Alignment:
Q  159 atttttcagcttattttcacaagttctccaaaatagcttata 200  Q
    ||||||||||||||||||| ||||| || |||||||||||||    
T  42419860 atttttcagcttattttcataagttttctaaaatagcttata 42419819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 5426126 - 5426090
Alignment:
Q  161 ttttcagcttattttcacaagttctccaaaatagctt 197  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  5426126 ttttcagcttattttcacaagtcctccagaatagctt 5426090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 12195005 - 12194965
Alignment:
Q  160 tttttcagcttattttcacaagttctccaaaatagcttata 200  Q
    ||||||| |||||||||||||||||||||| ||| ||||||    
T  12195005 tttttcaacttattttcacaagttctccaatataacttata 12194965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 18066205 - 18066130
Alignment:
Q  136 agcttatgac-ttgttcaaaagctatttttcagcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    |||||||||| ||| ||| |||||||||| || |||||||||  ||||||||||| ||||||||| ||| |||||||    
T  18066205 agcttatgacattgctcataagctatttt-caccttattttcttaagttctccaagatagcttatgaaaacagctta 18066130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 39073709 - 39073749
Alignment:
Q  163 ttcagcttattttcacaagttctccaaaatagcttataaaa 203  Q
    |||| ||||||||||| |||||||||| |||||||||||||    
T  39073709 ttcaacttattttcactagttctccaatatagcttataaaa 39073749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 42868483 - 42868527
Alignment:
Q  160 tttttcagcttattttcacaagttctccaaaatagcttataaaat 204  Q
    |||||||||||||||||| ||||||||||| ||| |||| |||||    
T  42868483 tttttcagcttattttcataagttctccaatataacttacaaaat 42868527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 23683 - 23641
Alignment:
Q  161 ttttcagcttattttcacaagttctccaaaatagcttataaaa 203  Q
    |||||| |||||||||||||||||||||| |||||||||||||    
T  23683 ttttcaacttattttcacaagttctccaatatagcttataaaa 23641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 825508 - 825546
Alignment:
Q  161 ttttcagcttattttcacaagttctccaaaatagcttat 199  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  825508 ttttcagcttattttcataagttctccaaaatagcttat 825546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 203
Target Start/End: Original strand, 26881 - 26924
Alignment:
Q  160 tttttcagcttattttcacaagttctccaaaatagcttataaaa 203  Q
    |||||||| ||||||||| ||||||||||| |||||||||||||    
T  26881 tttttcagattattttcataagttctccaatatagcttataaaa 26924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 2703093 - 2703052
Alignment:
Q  146 ttgttcaaaagctatttttcagcttattttcacaagttctcc 187  Q
    ||||||| ||||| |||||||||||||||||| |||||||||    
T  2703093 ttgttcataagctgtttttcagcttattttcataagttctcc 2703052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 20031808 - 20031763
Alignment:
Q  154 aagctatttttcagcttattttcacaagttctccaaaatagcttat 199  Q
    ||||| |||||||||| ||||||| |||||||| ||||||||||||    
T  20031808 aagctgtttttcagctcattttcataagttctctaaaatagcttat 20031763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 35571650 - 35571699
Alignment:
Q  162 tttcagcttattttcacaagttctccaaaatagcttataaaatcagctta 211  Q
    ||||| ||||||||||||||||||| || ||||||||| ||| |||||||    
T  35571650 tttcaacttattttcacaagttctctaagatagcttatgaaaacagctta 35571699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 52315216 - 52315253
Alignment:
Q  162 tttcagcttattttcacaagttctccaaaatagcttat 199  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  52315216 tttcagcttattttcataagttttccaaaatagcttat 52315253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 2244104 - 2244064
Alignment:
Q  160 tttttcagcttattttcacaagttctccaaaatagcttata 200  Q
    ||||||| |||||||||| ||||||||||| ||||||||||    
T  2244104 tttttcaccttattttcataagttctccaatatagcttata 2244064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 9841137 - 9841093
Alignment:
Q  140 tatgacttgttcaaaagctatttttcagcttattttcacaagttc 184  Q
    |||||| ||| || ||||| |||||||||||||||||||||||||    
T  9841137 tatgacatgtccataagctgtttttcagcttattttcacaagttc 9841093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 17822858 - 17822921
Alignment:
Q  136 agcttatgac-ttgttcaaaagctatttttcagcttattttcacaagttctccaaaatagcttat 199  Q
    |||||||||| || |||| ||||| ||||| |||||||||||| ||||||||||| |||||||||    
T  17822858 agcttatgacatttttcataagcttttttt-agcttattttcataagttctccaagatagcttat 17822921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 25904240 - 25904280
Alignment:
Q  160 tttttcagcttattttcacaagttctccaaaatagcttata 200  Q
    |||||||||||||||| | ||||||||||||| ||||||||    
T  25904240 tttttcagcttatttttataagttctccaaaacagcttata 25904280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 42121570 - 42121505
Alignment:
Q  129 ttgagatagcttatgacttgttcaaaagctatttttcagcttattttcacaagttctccaaaatagct 196  Q
    |||||| | |||||||| |||||| ||||| |||  |||||||||| |||||||||||||| ||||||    
T  42121570 ttgagagaacttatgacatgttcataagctgttt--cagcttatttccacaagttctccaagatagct 42121505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 42685470 - 42685438
Alignment:
Q  167 gcttattttcacaagttctccaaaatagcttat 199  Q
    ||||||||||||| |||||||||||||||||||    
T  42685470 gcttattttcacacgttctccaaaatagcttat 42685438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 50662755 - 50662795
Alignment:
Q  160 tttttcagcttattttcacaagttctccaaaatagcttata 200  Q
    ||||||| ||||||||||||| |||||||| ||||||||||    
T  50662755 tttttcaacttattttcacaatttctccaatatagcttata 50662795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 835267 - 835305
Alignment:
Q  161 ttttcagcttattttcacaagttctccaaaatagcttat 199  Q
    ||||||||||||||||| ||||||||||| |||||||||    
T  835267 ttttcagcttattttcataagttctccaagatagcttat 835305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 31624959 - 31624996
Alignment:
Q  161 ttttcagcttattttcacaagttctccaaaatagctta 198  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  31624959 ttttcagcttattttcataagttctccaatatagctta 31624996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1614 times since January 2019
Visitors: 1426