View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0113_low_22 (Length: 290)

Name: NF0113_low_22
Description: NF0113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0113_low_22
NF0113_low_22
[»] chr6 (20 HSPs)
chr6 (91-268)||(31290415-31290598)
chr6 (193-258)||(2820373-2820438)
chr6 (174-246)||(5970098-5970170)
chr6 (174-246)||(15443692-15443764)
chr6 (173-244)||(32313403-32313474)
chr6 (173-231)||(8931591-8931649)
chr6 (174-232)||(9195744-9195802)
chr6 (174-232)||(9617445-9617503)
chr6 (174-232)||(16766708-16766766)
chr6 (186-235)||(10335378-10335427)
chr6 (174-243)||(25038061-25038130)
chr6 (174-231)||(26562701-26562758)
chr6 (190-235)||(29449689-29449734)
chr6 (192-245)||(34625732-34625785)
chr6 (184-244)||(7377978-7378038)
chr6 (180-232)||(9025490-9025542)
chr6 (184-232)||(9629394-9629442)
chr6 (174-246)||(10760832-10760903)
chr6 (184-244)||(20371110-20371170)
chr6 (174-242)||(21395298-21395365)
[»] chr4 (9 HSPs)
chr4 (6-86)||(3762778-3762858)
chr4 (6-62)||(3755684-3755740)
chr4 (173-232)||(24613690-24613749)
chr4 (174-244)||(35723374-35723445)
chr4 (196-247)||(44796974-44797025)
chr4 (219-257)||(18727855-18727893)
chr4 (171-232)||(4383379-4383439)
chr4 (178-243)||(18513235-18513300)
chr4 (184-244)||(8423718-8423778)
[»] chr1 (13 HSPs)
chr1 (125-256)||(264591-264724)
chr1 (174-232)||(44482241-44482299)
chr1 (186-246)||(14332406-14332465)
chr1 (196-240)||(23605132-23605176)
chr1 (201-244)||(17080898-17080941)
chr1 (174-244)||(5376490-5376560)
chr1 (180-242)||(6427351-6427413)
chr1 (174-232)||(25361897-25361955)
chr1 (178-232)||(34712377-34712431)
chr1 (191-237)||(43609825-43609871)
chr1 (201-246)||(21057780-21057825)
chr1 (186-230)||(40158412-40158456)
chr1 (184-244)||(41877470-41877530)
[»] scaffold0022 (1 HSPs)
scaffold0022 (180-247)||(99889-99956)
[»] chr5 (14 HSPs)
chr5 (174-232)||(22423802-22423860)
chr5 (179-237)||(4991372-4991429)
chr5 (178-247)||(38749557-38749626)
chr5 (180-223)||(16374338-16374381)
chr5 (174-244)||(3966502-3966572)
chr5 (174-244)||(18592072-18592142)
chr5 (174-232)||(21522761-21522819)
chr5 (174-232)||(21533327-21533385)
chr5 (180-242)||(43208270-43208332)
chr5 (181-242)||(36838544-36838605)
chr5 (178-231)||(41558648-41558701)
chr5 (176-244)||(6035482-6035549)
chr5 (184-232)||(8420038-8420086)
chr5 (174-206)||(37328834-37328866)
[»] chr3 (8 HSPs)
chr3 (130-235)||(45382751-45382858)
chr3 (173-244)||(16192739-16192810)
chr3 (174-242)||(8039825-8039893)
chr3 (196-247)||(19323460-19323511)
chr3 (188-243)||(28576716-28576771)
chr3 (184-246)||(35990525-35990587)
chr3 (178-243)||(3185242-3185306)
chr3 (190-238)||(27097065-27097113)
[»] chr7 (12 HSPs)
chr7 (174-232)||(6028636-6028694)
chr7 (179-232)||(7328686-7328739)
chr7 (171-232)||(7438717-7438778)
chr7 (178-241)||(31808503-31808566)
chr7 (188-235)||(43160492-43160539)
chr7 (178-232)||(17307904-17307958)
chr7 (174-232)||(24339653-24339711)
chr7 (178-243)||(16341496-16341561)
chr7 (175-244)||(32308119-32308188)
chr7 (180-232)||(12843171-12843223)
chr7 (180-232)||(27945052-27945104)
chr7 (175-243)||(38134397-38134465)
[»] chr2 (4 HSPs)
chr2 (186-232)||(44605141-44605187)
chr2 (184-246)||(31026692-31026754)
chr2 (175-243)||(40681982-40682050)
chr2 (175-243)||(44860320-44860388)
[»] chr8 (10 HSPs)
chr8 (184-243)||(12985392-12985451)
chr8 (174-232)||(22651987-22652045)
chr8 (174-232)||(29447100-29447158)
chr8 (181-235)||(31681827-31681881)
chr8 (180-245)||(31548289-31548354)
chr8 (165-232)||(9382983-9383048)
chr8 (180-243)||(13650755-13650819)
chr8 (180-243)||(13709398-13709462)
chr8 (184-232)||(13844596-13844644)
chr8 (127-167)||(31105813-31105853)
[»] scaffold0123 (1 HSPs)
scaffold0123 (175-231)||(44516-44572)


Alignment Details
Target: chr6 (Bit Score: 141; Significance: 6e-74; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 91 - 268
Target Start/End: Original strand, 31290415 - 31290598
Alignment:
Q  91 ctacatgaggctggaggcacttatattcaattcccaaacacttctcattgaaggcgtgtctggtgtccaacatgtgtgtatttgacaccgacacgacacc 190  Q
    |||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31290415 ctacatgaggctcgaggcacctgtattcaattcccaaacacttctcattgaaggcgtgtctggtgtccaacatgtgtgtatttgacaccgacatgacacc 31290514  T
Q  191 gacatatgtaat------tacattcatttatgttattttctcaaattactatcggtgtcgacaaatcaatgtcaatgttaattt 268  Q
    ||||||||||||      |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31290515 gacatatgtaattacgtatacattcatttatgttattttctcaaattactatcggtgtcgacgaatcaatgtcaatgttaattt 31290598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 258
Target Start/End: Original strand, 2820373 - 2820438
Alignment:
Q  193 catatgtaattacattcatttatgttattttctcaaattactatcggtgtcgacaaatcaatgtca 258  Q
    ||||||| ||||||||||||||| |||||||||||||||| ||| ||| |  ||| ||||||||||    
T  2820373 catatgtgattacattcatttattttattttctcaaattattattggtatttacatatcaatgtca 2820438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 5970098 - 5970170
Alignment:
Q  174 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 246  Q
    ||||||||||||||||| |||| |||||||||| | | |||||| ||||| |||||||| || | ||||||||    
T  5970098 gacaccgacacgacacccacatttgtaattacactgaattatgtgattttttcaaattattaactgtgtcgac 5970170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 15443764 - 15443692
Alignment:
Q  174 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 246  Q
    |||| |||||| ||||| |||||| |||||| ||| | ||||||||||||||||||||| ||| | |||||||    
T  15443764 gacatcgacacaacaccaacatatataattatattgaattatgttattttctcaaattattattgatgtcgac 15443692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 32313474 - 32313403
Alignment:
Q  173 tgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 244  Q
    |||||||||||||||||| ||| || ||||| |||| | | ||||||||||||||| ||| ||| |||||||    
T  32313474 tgacaccgacacgacacccacacatataattgcattgaatcatgttattttctcaacttattattggtgtcg 32313403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 8931591 - 8931649
Alignment:
Q  173 tgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatt 231  Q
    |||||||||||||||| ||||| || |||||| | | | ||||||||||||||||||||    
T  8931591 tgacaccgacacgacatcgacacatataattatactgaattatgttattttctcaaatt 8931649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 9195744 - 9195802
Alignment:
Q  174 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 232  Q
    |||||| |||||||||||||| || |||||||| | | |||||| ||||||||||||||    
T  9195744 gacacctacacgacaccgacacatataattacactaaattatgtcattttctcaaatta 9195802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 9617503 - 9617445
Alignment:
Q  174 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 232  Q
    |||||||  |||||||||||| || |||||||||| | |||||| ||||||||||||||    
T  9617503 gacaccgcgacgacaccgacacatataattacattgaattatgtgattttctcaaatta 9617445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 16766766 - 16766708
Alignment:
Q  174 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 232  Q
    |||||||||||||||||||||  |||||||||| | | |||||| ||||| ||||||||    
T  16766766 gacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaatta 16766708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 10335378 - 10335427
Alignment:
Q  186 acaccgacatatgtaattacattcatttatgttattttctcaaattacta 235  Q
    ||||||||| || | |||||||||| |||||| |||||||||||||||||    
T  10335378 acaccgacacatctgattacattcaattatgtcattttctcaaattacta 10335427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 243
Target Start/End: Original strand, 25038061 - 25038130
Alignment:
Q  174 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 243  Q
    |||||| |||| | |||||||| |||||||||| | | |||||| |||||||||||||| || |||||||    
T  25038061 gacaccaacacaataccgacatttgtaattacactaaattatgtaattttctcaaattattaacggtgtc 25038130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 26562758 - 26562701
Alignment:
Q  174 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatt 231  Q
    ||||||||||||||| ||||| || |||||||| | | |||||| |||||||||||||    
T  26562758 gacaccgacacgacatcgacacatataattacactgaattatgtgattttctcaaatt 26562701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 29449734 - 29449689
Alignment:
Q  190 cgacatatgtaattacattcatttatgttattttctcaaattacta 235  Q
    ||||| |||| |||||||||| |||||||||||||| |||||||||    
T  29449734 cgacacatgtgattacattcaattatgttattttctgaaattacta 29449689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 34625785 - 34625732
Alignment:
Q  192 acatatgtaattacattcatttatgttattttctcaaattactatcggtgtcga 245  Q
    |||||||| |||||||||| |||  | |||||||||||||| ||||||||||||    
T  34625785 acatatgtgattacattcaattaattcattttctcaaattattatcggtgtcga 34625732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 7378038 - 7377978
Alignment:
Q  184 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 244  Q
    ||||||||||| || |||||||||| | |||||| |||||||||||||  || ||||||||    
T  7378038 cgacaccgacacatataattacattgaattatgtgattttctcaaatttttagcggtgtcg 7377978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 9025490 - 9025542
Alignment:
Q  180 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 232  Q
    ||||||||||||||| || |||||||| | | |||||| ||||||||||||||    
T  9025490 gacacgacaccgacacatataattacactgaattatgtgattttctcaaatta 9025542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 9629442 - 9629394
Alignment:
Q  184 cgacaccgacatatgtaattacattcatttatgttattttctcaaatta 232  Q
    ||||||||||| || |||||||||| | |||||| ||||||||||||||    
T  9629442 cgacaccgacacatataattacattgaattatgtgattttctcaaatta 9629394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 10760832 - 10760903
Alignment:
Q  174 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 246  Q
    |||||| |||||||| |||||  ||| |||||||||| | |||| |||||||||||||| |||| ||||||||    
T  10760832 gacaccaacacgacatcgacacgtgtgattacattcaat-atgtcattttctcaaattattatcagtgtcgac 10760903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 20371110 - 20371170
Alignment:
Q  184 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 244  Q
    ||||||||||| || |||| ||||| | |||||| |||||||||||||| || ||||||||    
T  20371110 cgacaccgacacatataatcacattgagttatgtgattttctcaaattattagcggtgtcg 20371170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 21395298 - 21395365
Alignment:
Q  174 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgt 242  Q
    ||||| |||||||||||||||  |||||||||| | | ||||| ||||||||||||||| || ||||||    
T  21395298 gacactgacacgacaccgacacttgtaattacactaaattatg-tattttctcaaattattagcggtgt 21395365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 9e-36; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 3762858 - 3762778
Alignment:
Q  6 aaaactaagccattttagattctactggcacgacatactaagtggaaataaccctacaacaattacaattgttcaaccacc 86  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3762858 aaaactaagccattttagattctactggcatgacatactaagtggaaataaccctacaacaattacaattgttcaaccacc 3762778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 3755740 - 3755684
Alignment:
Q  6 aaaactaagccattttagattctactggcacgacatactaagtggaaataaccctac 62  Q
    ||||||||| ||||| ||||||||||||||||||||| | |||||||| ||||||||    
T  3755740 aaaactaagtcatttcagattctactggcacgacatagtgagtggaaaaaaccctac 3755684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 24613690 - 24613749
Alignment:
Q  173 tgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 232  Q
    ||||||||||| ||||||||||  |||| ||||||| | |||||| ||||||||||||||    
T  24613690 tgacaccgacatgacaccgacacttgtacttacattgaattatgtgattttctcaaatta 24613749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 244
Target Start/End: Original strand, 35723374 - 35723445
Alignment:
Q  174 gacaccgacacgacaccgacatatgtaattacattcatttatgt-tattttctcaaattactatcggtgtcg 244  Q
    |||||||| ||||||| |||| || |||||||||| | |||||| ||||||||||||||| || ||||||||    
T  35723374 gacaccgatacgacactgacacatataattacattgaattatgtgtattttctcaaattattagcggtgtcg 35723445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 247
Target Start/End: Original strand, 44796974 - 44797025
Alignment:
Q  196 atgtaattacattcatttatgttattttctcaaattactatcggtgtcgaca 247  Q
    ||||||||||||| | ||||||||||||||||||||| | ||||||| ||||    
T  44796974 atgtaattacattgaattatgttattttctcaaattattgtcggtgttgaca 44797025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 257
Target Start/End: Complemental strand, 18727893 - 18727855
Alignment:
Q  219 attttctcaaattactatcggtgtcgacaaatcaatgtc 257  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  18727893 attttctcaaattactattggtgttgacaaatcaatgtc 18727855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 4383439 - 4383379
Alignment:
Q  171 tttgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 232  Q
    ||||||||||||||||||| ||||| |||||||||| | | |||||| ||||| ||||||||    
T  4383439 tttgacaccgacacgacactgacatttgtaattacactgaattatgtgatttt-tcaaatta 4383379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 18513235 - 18513300
Alignment:
Q  178 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 243  Q
    ||||||| |||| |||| || | |||||||| | |||||| |||||||||||||| ||||||||||    
T  18513235 ccgacacaacactgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtc 18513300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 8423718 - 8423778
Alignment:
Q  184 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 244  Q
    |||||||||||| | |||||||| | | |||||| |||||||||||||| || ||||||||    
T  8423718 cgacaccgacatttataattacactgaattatgtgattttctcaaattattagcggtgtcg 8423778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 125 - 256
Target Start/End: Complemental strand, 264724 - 264591
Alignment:
Q  125 caaacacttctcattgaaggcgtgtctggtgtccaacatgtgt--gtatttgacaccgacacgacaccgacatatgtaattacattcatttatgttattt 222  Q
    |||||||||||||| || |||||||| |||| ||||||| |||  || || ||||| ||||||||||| ||| |||| |||||||| |  ||||||| ||    
T  264724 caaacacttctcatagatggcgtgtcaggtgcccaacatatgtttgtgttcgacactgacacgacaccaacacatgtgattacatttaagtatgttactt 264625  T
Q  223 tctcaaattactatcggtgtcgacaaatcaatgt 256  Q
    ||| |||||| ||| |||| ||||||||||||||    
T  264624 tcttaaattaatattggtgacgacaaatcaatgt 264591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 44482299 - 44482241
Alignment:
Q  174 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 232  Q
    ||||||||||||||||||||| || |||||||| | | |||||| ||||||||||||||    
T  44482299 gacaccgacacgacaccgacacatataattacactgaattatgtgattttctcaaatta 44482241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 14332465 - 14332406
Alignment:
Q  186 acaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 246  Q
    |||||||||||||| |||||||| | |||||| |||||||||||||  |||||||||||||    
T  14332465 acaccgacatatgtgattacattgaattatgtcattttctcaaatt-ttatcggtgtcgac 14332406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 23605132 - 23605176
Alignment:
Q  196 atgtaattacattcatttatgttattttctcaaattactatcggt 240  Q
    |||| |||||||||| || ||||||||||||||||||||||||||    
T  23605132 atgtgattacattcaattttgttattttctcaaattactatcggt 23605176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 244
Target Start/End: Original strand, 17080898 - 17080941
Alignment:
Q  201 attacattcatttatgttattttctcaaattactatcggtgtcg 244  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||    
T  17080898 attacattcaattatgttattttctcaaattattattggtgtcg 17080941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 244
Target Start/End: Original strand, 5376490 - 5376560
Alignment:
Q  174 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 244  Q
    |||| ||||||||||||||||  | |||||||| | | |||||||||||||| |||||| || ||||||||    
T  5376490 gacatcgacacgacaccgacacttttaattacactgaattatgttattttcttaaattattagcggtgtcg 5376560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 6427413 - 6427351
Alignment:
Q  180 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgt 242  Q
    ||||||||||| ||| || |||||||||| | |||||| |||||||||||||| || ||||||    
T  6427413 gacacgacaccaacacatataattacattgaattatgtgattttctcaaattattagcggtgt 6427351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 25361955 - 25361897
Alignment:
Q  174 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 232  Q
    |||||||||||||||| |||| || |||||||| | | |||||| ||||||||||||||    
T  25361955 gacaccgacacgacactgacacatataattacactgaattatgtgattttctcaaatta 25361897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 34712377 - 34712431
Alignment:
Q  178 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 232  Q
    |||||||||||| |||| || |||||||| | | |||||||||||||||||||||    
T  34712377 ccgacacgacactgacacatataattacactaaattatgttattttctcaaatta 34712431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 43609825 - 43609871
Alignment:
Q  191 gacatatgtaattacattcatttatgttattttctcaaattactatc 237  Q
    |||| |||| |||||||||| ||||||||||||||||||||| ||||    
T  43609825 gacacatgtgattacattcaattatgttattttctcaaattattatc 43609871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 21057825 - 21057780
Alignment:
Q  201 attacattcatttatgttattttctcaaattactatcggtgtcgac 246  Q
    |||||||||| |||||||||||||| |||||| || ||||||||||    
T  21057825 attacattcaattatgttattttctaaaattattagcggtgtcgac 21057780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 40158412 - 40158456
Alignment:
Q  186 acaccgacatatgtaattacattcatttatgttattttctcaaat 230  Q
    ||||||||| |||| ||| ||||||||||||| ||||||||||||    
T  40158412 acaccgacacatgtgatttcattcatttatgtcattttctcaaat 40158456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 41877470 - 41877530
Alignment:
Q  184 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 244  Q
    |||||||||||  |||||||||| | | |||||| |||||||||||||| || ||||||||    
T  41877470 cgacaccgacacttgtaattacactaaattatgtaattttctcaaattattagcggtgtcg 41877530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 99956 - 99889
Alignment:
Q  180 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgaca 247  Q
    ||||||||||| ||| || |||||||||| | |||||||||||||| |||||| ||||||||||||||    
T  99956 gacacgacaccaacacatataattacattgaattatgttattttctaaaattattatcggtgtcgaca 99889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 22423802 - 22423860
Alignment:
Q  174 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 232  Q
    |||||||||||||||||||||||| |||||| ||| | |||||| ||||||||||||||    
T  22423802 gacaccgacacgacaccgacatatataattatattgaattatgtgattttctcaaatta 22423860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 4991372 - 4991429
Alignment:
Q  179 cgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatc 237  Q
    |||||||||||||||| || |||||||||  |||||||| |||||||||||||||||||    
T  4991372 cgacacgacaccgacacatctaattacatg-atttatgtcattttctcaaattactatc 4991429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 38749557 - 38749626
Alignment:
Q  178 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgaca 247  Q
    ||||||| ||||| ||| || |||||||||| | |||||| ||||| |||||||| ||||||||||||||    
T  38749557 ccgacacaacaccaacacatataattacattgaattatgtcattttttcaaattattatcggtgtcgaca 38749626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 16374338 - 16374381
Alignment:
Q  180 gacacgacaccgacatatgtaattacattcatttatgttatttt 223  Q
    ||||||||||||||| ||||||||||| | ||||||||||||||    
T  16374338 gacacgacaccgacacatgtaattacactgatttatgttatttt 16374381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 244
Target Start/End: Complemental strand, 3966572 - 3966502
Alignment:
Q  174 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 244  Q
    ||||| ||||||||||||||| || |||||||| | | || ||| |||||||||||||| || ||||||||    
T  3966572 gacactgacacgacaccgacacatataattacactgaattgtgtgattttctcaaattattagcggtgtcg 3966502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 244
Target Start/End: Complemental strand, 18592142 - 18592072
Alignment:
Q  174 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 244  Q
    |||||||||||||||||| || || |||||||||| | |||||| ||||||| ||| || || ||||||||    
T  18592142 gacaccgacacgacaccggcacatataattacattgaattatgtaattttcttaaaatattagcggtgtcg 18592072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 21522819 - 21522761
Alignment:
Q  174 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 232  Q
    |||||||||||||||||||||  |||||||||| | | |||||||||||| | ||||||    
T  21522819 gacaccgacacgacaccgacaattgtaattacactgaattatgttattttttaaaatta 21522761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 21533385 - 21533327
Alignment:
Q  174 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 232  Q
    |||||||||||||||||||||  |||||||||| | | |||||||||||| | ||||||    
T  21533385 gacaccgacacgacaccgacaattgtaattacactgaattatgttattttttaaaatta 21533327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 43208270 - 43208332
Alignment:
Q  180 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgt 242  Q
    ||||| |||| |||| || | |||||||| | |||||| ||||||||||||||||||||||||    
T  43208270 gacacaacacagacagatatgattacattgaattatgtcattttctcaaattactatcggtgt 43208332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 36838605 - 36838544
Alignment:
Q  181 acacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgt 242  Q
    |||||||||||||| || |||||||| | | |||||| |||||||||||||| || ||||||    
T  36838605 acacgacaccgacacatataattacactaaattatgtaattttctcaaattattagcggtgt 36838544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 41558648 - 41558701
Alignment:
Q  178 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatt 231  Q
    |||||||||||| |||| || |||||||||| | |||||| |||||||||||||    
T  41558648 ccgacacgacactgacacatttaattacattgaattatgtcattttctcaaatt 41558701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 6035549 - 6035482
Alignment:
Q  176 caccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 244  Q
    ||||||||||||||||||| || |||||||| | | |||| ||| |||||||||||| || ||||||||    
T  6035549 caccgacacgacaccgacaaatataattacactgaattatatta-tttctcaaattattagcggtgtcg 6035482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 8420086 - 8420038
Alignment:
Q  184 cgacaccgacatatgtaattacattcatttatgttattttctcaaatta 232  Q
    |||||||||||  |||||||||||| | |||||||||||| ||||||||    
T  8420086 cgacaccgacacttgtaattacattgaattatgttattttttcaaatta 8420038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 37328834 - 37328866
Alignment:
Q  174 gacaccgacacgacaccgacatatgtaattaca 206  Q
    ||||||||||||||||||||| |||||||||||    
T  37328834 gacaccgacacgacaccgacacatgtaattaca 37328866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 235
Target Start/End: Complemental strand, 45382858 - 45382751
Alignment:
Q  130 acttctcattgaaggcgtgtctggtgtccaacatgtgt--gtatttgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctca 227  Q
    |||||| || |||||| |||| ||||||| |||| |||  || | ||||||| ||| | ||||||||||||| ||||||||||  ||||||||||||| |    
T  45382858 acttctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctgacaccaacatgtcaccgacatatgtgattacattcaaatatgttattttctta 45382759  T
Q  228 aattacta 235  Q
    ||||||||    
T  45382758 aattacta 45382751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 16192739 - 16192810
Alignment:
Q  173 tgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 244  Q
    |||||||||||||||| | ||| || |||||||| | | ||||||||||||||||||||| || ||||||||    
T  16192739 tgacaccgacacgacatcaacacatataattacactgaattatgttattttctcaaattattaacggtgtcg 16192810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 8039825 - 8039893
Alignment:
Q  174 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgt 242  Q
    ||||||||||||||||||||| || |||||||| | | |||| | |||||||||||||| || ||||||    
T  8039825 gacaccgacacgacaccgacacatataattacactgaattatataattttctcaaattattagcggtgt 8039893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 247
Target Start/End: Original strand, 19323460 - 19323511
Alignment:
Q  196 atgtaattacattcatttatgttattttctcaaattactatcggtgtcgaca 247  Q
    |||| |||| ||||| |||||| ||||||||||||||||||| |||||||||    
T  19323460 atgtgattaaattcaattatgtcattttctcaaattactatcagtgtcgaca 19323511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 28576771 - 28576716
Alignment:
Q  188 accgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 243  Q
    ||||||| ||||||||||||||| || ||| |||||||||||||| || |||||||    
T  28576771 accgacacatgtaattacattcaattttgtcattttctcaaattattaccggtgtc 28576716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 35990525 - 35990587
Alignment:
Q  184 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 246  Q
    |||||| |||| ||||  ||||||||| |||| |||||||||||||||| |||| ||||||||    
T  35990525 cgacactgacacatgtggttacattcagttattttattttctcaaattattatcagtgtcgac 35990587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 3185242 - 3185306
Alignment:
Q  178 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 243  Q
    |||||||||||| |||| ||||||||||||||| ||||| ||| |||| |||||| ||||| ||||    
T  3185242 ccgacacgacactgacacatgtaattacattcaattatg-tatcttctgaaattattatcgatgtc 3185306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 27097065 - 27097113
Alignment:
Q  190 cgacatatgtaattacattcatttatgttattttctcaaattactatcg 238  Q
    |||||||| |||||| ||| | |||||| ||||||||||||||||||||    
T  27097065 cgacatatataattaaattgaattatgtaattttctcaaattactatcg 27097113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 6028694 - 6028636
Alignment:
Q  174 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 232  Q
    ||||| |||||||||||||||| |||||||||||| | ||||||||| || ||||||||    
T  6028694 gacactgacacgacaccgacatttgtaattacattaaattatgttatattttcaaatta 6028636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 7328686 - 7328739
Alignment:
Q  179 cgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 232  Q
    |||||||||||||||| || |||||||| | | |||||||||||||||||||||    
T  7328686 cgacacgacaccgacacatataattacactaaattatgttattttctcaaatta 7328739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 7438778 - 7438717
Alignment:
Q  171 tttgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 232  Q
    ||||||||||||| ||||||||||  |||||||||||| | |||||| ||||| ||||||||    
T  7438778 tttgacaccgacatgacaccgacacttgtaattacattgaattatgtgattttttcaaatta 7438717  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 31808503 - 31808566
Alignment:
Q  178 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtg 241  Q
    ||||||||||||| ||| |||| |||||||| | || ||| |||||||||||||| ||||||||    
T  31808503 ccgacacgacaccaacacatgtgattacattgacttgtgtcattttctcaaattattatcggtg 31808566  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 43160539 - 43160492
Alignment:
Q  188 accgacatatgtaattacattcatttatgttattttctcaaattacta 235  Q
    ||||||| |||| |||||||||| |||||||||||||| |||||||||    
T  43160539 accgacacatgtgattacattcaattatgttattttcttaaattacta 43160492  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 17307958 - 17307904
Alignment:
Q  178 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 232  Q
    ||||||||||||| ||| || |||||||| | | |||||||||||||||||||||    
T  17307958 ccgacacgacaccaacacatataattacactgaattatgttattttctcaaatta 17307904  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 24339711 - 24339653
Alignment:
Q  174 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 232  Q
    |||||||||||||||||||||  |||||||||| | | |||||| ||||| ||||||||    
T  24339711 gacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaatta 24339653  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 16341561 - 16341496
Alignment:
Q  178 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 243  Q
    |||||||||||||| || || |||||||| | | |||||| |||||||||||||| |||| |||||    
T  16341561 ccgacacgacaccggcacatataattacacttaattatgtgattttctcaaattattatcagtgtc 16341496  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 244
Target Start/End: Complemental strand, 32308188 - 32308119
Alignment:
Q  175 acaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 244  Q
    ||||||||||||||| |||| ||  ||||||| | | |||||| |||||||||||||| || ||||||||    
T  32308188 acaccgacacgacactgacacatacaattacactgaattatgtgattttctcaaattattagcggtgtcg 32308119  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 12843171 - 12843223
Alignment:
Q  180 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 232  Q
    |||||||||| |||| ||||||||||||| | |||||| ||||| ||||||||    
T  12843171 gacacgacactgacacatgtaattacattgaattatgtaattttatcaaatta 12843223  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 27945104 - 27945052
Alignment:
Q  180 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 232  Q
    |||||||||||||||  |||||||||| | | |||||| ||||||||||||||    
T  27945104 gacacgacaccgacacttgtaattacactgaattatgtaattttctcaaatta 27945052  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 38134397 - 38134465
Alignment:
Q  175 acaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 243  Q
    ||||| ||| || ||||||| || | |||||||| | |||||| |||||||||||||| ||||||||||    
T  38134397 acacccacatgagaccgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtc 38134465  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 44605141 - 44605187
Alignment:
Q  186 acaccgacatatgtaattacattcatttatgttattttctcaaatta 232  Q
    ||||||||| ||||||||||||| | |||||||||||||||||||||    
T  44605141 acaccgacacatgtaattacattgaattatgttattttctcaaatta 44605187  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 246
Target Start/End: Complemental strand, 31026754 - 31026692
Alignment:
Q  184 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 246  Q
    |||||||||||||| | |||||||| | |||||| ||||||| |||||| ||||||| |||||    
T  31026754 cgacaccgacatatatgattacattgaattatgtcattttcttaaattattatcggtctcgac 31026692  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 40682050 - 40681982
Alignment:
Q  175 acaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 243  Q
    ||||| ||||||||  ||||  || ||||||||| | |||||| |||||||||||||| ||||||||||    
T  40682050 acaccaacacgacattgacacgtgcaattacattgaattatgtcattttctcaaattattatcggtgtc 40681982  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 44860388 - 44860320
Alignment:
Q  175 acaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 243  Q
    ||||| |||||||||||||| || |||||||| | | |||||  |||||||||||||| || |||||||    
T  44860388 acaccaacacgacaccgacacatataattacactgaattatgcgattttctcaaattattagcggtgtc 44860320  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 12985451 - 12985392
Alignment:
Q  184 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 243  Q
    |||||||||||||| | |||||||| | |||||| |||||||||||||| ||| ||||||    
T  12985451 cgacaccgacatatatgattacattgaattatgtgattttctcaaattattataggtgtc 12985392  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 22652045 - 22651987
Alignment:
Q  174 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 232  Q
    |||||||||||||||||||||  |||||||| ||| | |||||| ||||| ||||||||    
T  22652045 gacaccgacacgacaccgacacttgtaattatattgaattatgtgattttttcaaatta 22651987  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 29447100 - 29447158
Alignment:
Q  174 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 232  Q
    |||||||||| ||||||||||  |||| ||||||| | |||||| ||||||||||||||    
T  29447100 gacaccgacatgacaccgacacttgtagttacattgaattatgtgattttctcaaatta 29447158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 31681827 - 31681881
Alignment:
Q  181 acacgacaccgacatatgtaattacattcatttatgttattttctcaaattacta 235  Q
    |||||||||||||| |||| ||| |||||| |||||| ||||||| |||||||||    
T  31681827 acacgacaccgacacatgtgatttcattcaattatgtcattttcttaaattacta 31681881  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 31548289 - 31548354
Alignment:
Q  180 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcga 245  Q
    |||| |||||||||| |||| |||||||| | |||||| ||||| |||||| | ||||||||||||    
T  31548289 gacatgacaccgacacatgtgattacattgaattatgtcattttatcaaataattatcggtgtcga 31548354  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 232
Target Start/End: Complemental strand, 9383048 - 9382983
Alignment:
Q  165 tgtgtatttgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 232  Q
    ||||| ||||||||||||||||||| |||| |  |||||||||| | ||||||  |||||||||||||    
T  9383048 tgtgtgtttgacaccgacacgacacagacaca--taattacattgaattatgtagttttctcaaatta 9382983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 13650819 - 13650755
Alignment:
Q  180 gacacgacaccgacatatgtaattacattcatttatgt-tattttctcaaattactatcggtgtc 243  Q
    |||||||||||| || ||||| ||||||||||| |  | ||||||||||| ||||||||||||||    
T  13650819 gacacgacaccgtcacatgtagttacattcattaacttctattttctcaacttactatcggtgtc 13650755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 13709462 - 13709398
Alignment:
Q  180 gacacgacaccgacatatgtaattacattcatttatgt-tattttctcaaattactatcggtgtc 243  Q
    |||||||||||| || ||||| ||||||||||| |  | ||||||||||| ||||||||||||||    
T  13709462 gacacgacaccgtcacatgtagttacattcattaacttctattttctcaacttactatcggtgtc 13709398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 13844596 - 13844644
Alignment:
Q  184 cgacaccgacatatgtaattacattcatttatgttattttctcaaatta 232  Q
    ||||||||||| || |||||||| ||| |||||| ||||||||||||||    
T  13844596 cgacaccgacacatataattacactcaattatgtgattttctcaaatta 13844644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 31105813 - 31105853
Alignment:
Q  127 aacacttctcattgaaggcgtgtctggtgtccaacatgtgt 167  Q
    |||||||| ||||||||  ||||||||||||||||||||||    
T  31105813 aacacttcacattgaagatgtgtctggtgtccaacatgtgt 31105853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 44516 - 44572
Alignment:
Q  175 acaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatt 231  Q
    |||||||||||| ||||||| || |||||||| | | |||||| |||||||||||||    
T  44516 acaccgacacgataccgacacatataattacactgaattatgtgattttctcaaatt 44572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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