View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0113_low_26 (Length: 262)
Name: NF0113_low_26
Description: NF0113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0113_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 14525422 - 14525162
Alignment:
| Q |
1 |
atggtatcaacaaaacgagttatttttaaaatatatttacccctgccctcnnnnnnngtatatatttacctctattttgaatcattatgtacacgaccgc |
100 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14525422 |
atggtatcaacaaaacgagttattcttaaaatatatttacccctgccctaaaaaaaagtatatatttacctctattttgaatcattatgtacacgaccgc |
14525323 |
T |
|
| Q |
101 |
ccccaaaacacccaaattcaataatttaatacnnnnnnnn----caatgaataat---ttggtactcttatgatgatgtgcttggcactattataccagt |
193 |
Q |
| |
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||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14525322 |
ccccaaaacacccaaattcaataatttgatacttttttttttttcaatgaataataatttggtactcttatgatgatgtgcttggcactattataccagt |
14525223 |
T |
|
| Q |
194 |
gcattttctttttgacacaggcagtataccagcaacatagtggctcacatgtctctctgct |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14525222 |
gcattttctttttgacacaggcagtataccagcaacatagtggctcacatgtctctctgct |
14525162 |
T |
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