View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0113_low_27 (Length: 262)
Name: NF0113_low_27
Description: NF0113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0113_low_27 |
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| [»] chr2 (3 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0211 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 28 - 262
Target Start/End: Complemental strand, 36050235 - 36050001
Alignment:
| Q |
28 |
cactatccttaaggattttctgcgtaattatacgctaacccccagaatttaacagaccatttccaataagaatcgaggaaatagaactgacaaggaaaaa |
127 |
Q |
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|||| |||||||| ||||| |||||||||||||||||| ||||||||||||||||||| || || |||||||||||||| |||||||||||||||||||| |
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| T |
36050235 |
cactgtccttaagaattttttgcgtaattatacgctaaaccccagaatttaacagacccttcccgataagaatcgaggatatagaactgacaaggaaaaa |
36050136 |
T |
|
| Q |
128 |
tattttcaggaagatgataacccaaaatagtgtttgtgaggggtattttgnnnnnnncgtgctactgatcaaaggttttggaaaaataaaaggcttctaa |
227 |
Q |
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|||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36050135 |
tatttttaggaagatgataacccaaagtagtgtttgtgaggggtattttgtttttgtcgtgctactgatcaaaggttttggaaaaataaaaagcttctaa |
36050036 |
T |
|
| Q |
228 |
tctcttgtacccgtaaaaaaggagttttatactac |
262 |
Q |
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||||| |||||||||||||||||||| ||| |||| |
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| T |
36050035 |
tctctcgtacccgtaaaaaaggagttctatcctac |
36050001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 151
Target Start/End: Original strand, 13437751 - 13437865
Alignment:
| Q |
36 |
ttaaggattttctgcgtaattatacgctaacccccagaatttaacagaccatttccaataag-aatcgaggaaatagaactgacaaggaaaaatattttc |
134 |
Q |
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|||||||||||| |||||||||||||||| || ||| ||||||||||||||| | | | | ||| ||||| |||||| |||| ||| |||||||| |
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| T |
13437751 |
ttaaggattttccacgtaattatacgctaatcctcaggatttaacagaccattctcgacatgaaattaaggaatcagaactaacaa--aaatatattttc |
13437848 |
T |
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| Q |
135 |
aggaagatgataaccca |
151 |
Q |
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||||||||||||||||| |
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| T |
13437849 |
aggaagatgataaccca |
13437865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 152
Target Start/End: Original strand, 24412044 - 24412169
Alignment:
| Q |
28 |
cactatccttaaggattttctgcgtaattatacgctaa-cccccagaatttaacagaccatttccaata-agaatcgaggaaatagaactgacaaggaaa |
125 |
Q |
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|||| |||||| ||||||| |||||||||| | |||| |||||| ||| ||||||||| || | ||| ||||||||| ||| ||||||||||| |||| |
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| T |
24412044 |
cactgtccttatggattttacgcgtaattatgctctaatcccccaaaatataacagacccttctcgatatagaatcgagtaaacagaactgacaatgaaa |
24412143 |
T |
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| Q |
126 |
aatattttcaggaagatgataacccaa |
152 |
Q |
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||| ||| ||||||||| |||||||| |
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| T |
24412144 |
aattattttaggaagatg-taacccaa |
24412169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 28 - 262
Target Start/End: Complemental strand, 964675 - 964442
Alignment:
| Q |
28 |
cactatccttaaggattttctgcgtaattatacgctaacccccagaatttaacagaccatttccaataagaatcgaggaaatagaactgacaaggaaaaa |
127 |
Q |
| |
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|||| |||||||||||||||||| ||| |||||||||||| |||| |||||| ||| | || || | |||||||||||| ||||||||||||| ||||| |
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| T |
964675 |
cactgtccttaaggattttctgcataaatatacgctaacctccaggatttaatagatccttcccgacaagaatcgaggatatagaactgacaaa-aaaaa |
964577 |
T |
|
| Q |
128 |
tattttcaggaagatgataacccaaaatagtgtttgtgaggggtattttgnnnnnnncgtgctactgatcaaaggttttggaaaaataaaaggcttctaa |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
964576 |
tattttcaggaagatgataacccaaaatagtgtttgtgaggggtattttgtttttgtcgtgctactgatcaacggttttggaaaaataaaaggcttctaa |
964477 |
T |
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| Q |
228 |
tctcttgtacccgtaaaaaaggagttttatactac |
262 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
964476 |
tctcttgtacccgtaaaaaaggagttttatactac |
964442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 121
Target Start/End: Original strand, 48713623 - 48713709
Alignment:
| Q |
35 |
cttaaggattttctgcgtaattatacgctaacccccagaatttaacagaccatttccaataagaatcgaggaaatagaactgacaag |
121 |
Q |
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|||||||||||||| ||| |||||||||||| |||||| |||||||||||| || || ||||||| |||||| | | |||||||||| |
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| T |
48713623 |
cttaaggattttctacgtgattatacgctaaaccccaggatttaacagacccttcccgataagaaccgaggatacataactgacaag |
48713709 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 143
Target Start/End: Complemental strand, 6686515 - 6686398
Alignment:
| Q |
28 |
cactatccttaaggattttctgcgtaattatacgctaa-cccccagaatttaacagaccatttccaata-agaatcgaggaaatagaactgacaaggaaa |
125 |
Q |
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|||| ||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||| ||||| | ||||||||||| |||||||| ||||||| |
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| T |
6686515 |
cactgtccttaaggattttccgcgtaattatacgctaatcccccaggatttaacagaccattctcaatatataatcgaggaaacagaactgataaggaaa |
6686416 |
T |
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| Q |
126 |
aatattttcaggaagatg |
143 |
Q |
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| |||||||||||||||| |
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| T |
6686415 |
attattttcaggaagatg |
6686398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 153
Target Start/End: Original strand, 579961 - 580079
Alignment:
| Q |
35 |
cttaaggattttctgcgtaattatacgctaa-cccccagaatttaacaga-ccatttccaataagaatcgaggaaatagaactgacaaggaaaaatattt |
132 |
Q |
| |
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||||||||||||| ||||||||||||| ||| ||||||||||||||| || || |||| | ||||||||| ||| ||||| |||| || |||||| |
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| T |
579961 |
cttaaggattttccgcgtaattatacgttaatcccccagaatttaacggacccttttcgacgtagaatcgagaaaactgaactaacaa--taatatattt |
580058 |
T |
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| Q |
133 |
tcaggaagatgataacccaaa |
153 |
Q |
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|||| |||||||||||||||| |
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| T |
580059 |
tcagaaagatgataacccaaa |
580079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 131
Target Start/End: Complemental strand, 29275847 - 29275742
Alignment:
| Q |
28 |
cactatccttaaggattttctgcgtaattatacgctaa-cccccagaatttaacagaccatttccaat-aagaatcgaggaaatagaactgacaaggaaa |
125 |
Q |
| |
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||||||| |||||||||||| |||| |||||||||||| |||| |||||||||| || | || ||| ||||||||||||| |||||||||||| ||| |
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| T |
29275847 |
cactatctttaaggattttccgcgtgattatacgctaatcccctagaatttaaccgatccttcttaatgtagaatcgaggaaacagaactgacaagaaaa |
29275748 |
T |
|
| Q |
126 |
aatatt |
131 |
Q |
| |
|
| |||| |
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|
| T |
29275747 |
attatt |
29275742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 38061351 - 38061314
Alignment:
| Q |
33 |
tccttaaggattttctgcgtaattatacgctaaccccc |
70 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||| |
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| T |
38061351 |
tccttaaggattttccgcgtaattatacgctaatcccc |
38061314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0211 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0211
Description:
Target: scaffold0211; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 20870 - 20928
Alignment:
| Q |
28 |
cactatccttaaggattttctgcgtaattatacgctaa-cccccagaatttaacagacc |
85 |
Q |
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|
|||||||||||| |||||||||||||||||| ||||| || |||| |||||||||||| |
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|
| T |
20870 |
cactatccttaaaaattttctgcgtaattatatgctaatcctccaggatttaacagacc |
20928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 34237329 - 34237423
Alignment:
| Q |
28 |
cactatccttaaggattttctgcgtaattatacgctaa-cccccagaatttaacagaccatttccaataagaatcgaggaaatagaactgacaag |
121 |
Q |
| |
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|||| ||||||||||||||| |||||||||||| |||| || || |||||||||||| ||| | ||||| | |||||| | |||||||||||| |
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| T |
34237329 |
cactgtccttaaggattttccgcgtaattatacactaatttcctaggatttaacagacccttttcgataaggaccgaggatacagaactgacaag |
34237423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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