View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0113_low_5 (Length: 532)

Name: NF0113_low_5
Description: NF0113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0113_low_5
NF0113_low_5
[»] chr4 (12 HSPs)
chr4 (166-512)||(3762512-3762858)
chr4 (166-401)||(3776593-3776828)
chr4 (166-403)||(3780906-3781143)
chr4 (171-508)||(3745721-3746052)
chr4 (166-512)||(3755400-3755740)
chr4 (166-512)||(3751533-3751873)
chr4 (166-400)||(3766928-3767162)
chr4 (312-512)||(3771304-3771498)
chr4 (225-287)||(3789113-3789175)
chr4 (219-287)||(3845060-3845128)
chr4 (212-274)||(3770737-3770799)
chr4 (223-268)||(3851509-3851554)
[»] chr7 (2 HSPs)
chr7 (80-157)||(49082741-49082812)
chr7 (182-508)||(25985274-25985591)
[»] scaffold0433 (1 HSPs)
scaffold0433 (219-287)||(10020-10088)


Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 166 - 512
Target Start/End: Original strand, 3762512 - 3762858
Alignment:
Q  166 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  3762512 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactaccattatactttccttcaatgaaagc 3762611  T
Q  266 aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa 365  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  3762612 aaaattcactgtcataagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagctcttccaacaagtttagaactcagttcgggtcctaaa 3762711  T
Q  366 gtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttat 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3762712 gtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttat 3762811  T
Q  466 ttccacttagtatgtcgtgccagtagaatctaaaatggcttagtttt 512  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  3762812 ttccacttagtatgtcatgccagtagaatctaaaatggcttagtttt 3762858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 166 - 401
Target Start/End: Original strand, 3776593 - 3776828
Alignment:
Q  166 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc 265  Q
    |||| ||||||||||||||||| ||||||||||||||| ||||  |||||||||||||||||||||| ||||| |||||||||||||||||||| |||||    
T  3776593 cactaccaccaacaacaggcatttccctaaccttattacgagcatgattcctccccaagatagtaatggtactaccattatactttccttcaatgaaagc 3776692  T
Q  266 aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa 365  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||| ||| |||||||||    
T  3776693 aaaattcattgtcataagaaaacctatttcttcctgtgaagcagatgcatagaatccttgagctctaccaacaagtttagaactcaattcgggtcctaaa 3776792  T
Q  366 gtcaaagggttgtcaatcatgcggactaaaccaaaa 401  Q
    || |||||||||||||||||||  ||||||||||||    
T  3776793 gttaaagggttgtcaatcatgctaactaaaccaaaa 3776828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 166 - 403
Target Start/End: Original strand, 3780906 - 3781143
Alignment:
Q  166 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc 265  Q
    |||| |||||||||||||||||||||||||||  |||||  || ||||||||||| | |||||||| |||||| |||||||||||||||||||| |||||    
T  3780906 cactaccaccaacaacaggcatctccctaaccaaattaatggcaggattcctccctacgatagtaagagtactaccattatactttccttcaatgaaagc 3781005  T
Q  266 aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa 365  Q
    |||||||||||||| ||||||||||| |||||| ||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  3781006 aaaattcattgtcataagaaaacctagttcttcttgtgaagcagatgcatagaatccttgagctcttccaacaagcttagaactcagttctggtcctaaa 3781105  T
Q  366 gtcaaagggttgtcaatcatgcggactaaaccaaaagc 403  Q
    || ||||||||||||||||||   || |||||||||||    
T  3781106 gttaaagggttgtcaatcatgttaaccaaaccaaaagc 3781143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 171 - 508
Target Start/End: Original strand, 3745721 - 3746052
Alignment:
Q  171 ccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaat 270  Q
    |||||||||| |||||| |||||||||||||||||||| | ||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||     
T  3745721 ccaccaacaataggcatttccctaaccttattaagagcagaatttctccccaagatagtaatagtactcccattatactttccttcaatgaaagcaaaag 3745820  T
Q  271 tcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaa 370  Q
    |||| | ||  |  ||||  |  || |||| ||||||||||||||| || |||||||||||||||||||| |||||||||| || |||||||||||| ||    
T  3745821 tcatagccatgaacaaactaaactcatcctttgatgcagatgcatacaacccttgagcttttccaacaagcttagaactcatttttggtcctaaagttaa 3745920  T
Q  371 agggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttatttcca 470  Q
    |||||||||||| |||  |||||||||||||| | ||      |||| || ||| ||||||||| || | |||| ||||||||  |||||||| ||||||    
T  3745921 agggttgtcaataatgttgactaaaccaaaagaagta------gttgtgtttagcttcaatggtagtggtacaactgtaattgaagtagggttttttcca 3746014  T
Q  471 cttagtatgtcgtgccagtagaatctaaaatggcttag 508  Q
    || |  ||||| |||||  ||||||| ||||| |||||    
T  3746015 ctcatgatgtcatgccaaaagaatctgaaatgacttag 3746052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 166 - 512
Target Start/End: Original strand, 3755400 - 3755740
Alignment:
Q  166 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc 265  Q
    |||| |||||||  ||||||||||| ||||| |||| || | | | |||||| ||||| |||||||  |||||||||||||||||||||||| | |||||    
T  3755400 cactaccaccaatcacaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgtacttccattatactttccttcagtaaaagc 3755499  T
Q  266 aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa 365  Q
    ||||||||| | || ||| ||| | | ||| || |   ||||||||||||||||||||||||||||||||||||  |||||| |||  | ||||||||||    
T  3755500 aaaattcatagccataagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttccaacaatcttagaattcaactgtggtcctaaa 3755599  T
Q  366 gtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttat 465  Q
    || ||||||||||| |||||||||||| ||||||| ||| |      |||||||| |||||||| ||||||| | |||| || || ||  |||||||| |    
T  3755600 gttaaagggttgtcgatcatgcggactgaaccaaaggcagt------ggttgagtttagtttcattggtggtgggacaactgcaactgaagtagggtttt 3755693  T
Q  466 ttccacttagtatgtcgtgccagtagaatctaaaatggcttagtttt 512  Q
    ||||||| | ||||||||||||||||||||| ||||| |||||||||    
T  3755694 ttccactcactatgtcgtgccagtagaatctgaaatgacttagtttt 3755740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 166 - 512
Target Start/End: Original strand, 3751533 - 3751873
Alignment:
Q  166 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc 265  Q
    |||| ||||||| || ||||||||| ||| ||||||||| | | | ||||||||||||||||||||| ||||| |||||||||||||||||||| |||||    
T  3751533 cactaccaccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatactttccttcaatgaaagc 3751632  T
Q  266 aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa 365  Q
    ||| ||||| | ||  |||||||| |  || || |||||||||||||||||||| |||||||||||||||||||| |||||||||| || |||||||| |    
T  3751633 aaagttcatagccatgagaaaaccaaaatcatcttgtgatgcagatgcatagaaaccttgagcttttccaacaagcttagaactcaattgtggtcctata 3751732  T
Q  366 gtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttat 465  Q
    ||||||||||  |||| ||||  |||| ||||||||    ||||   ||||| || ||| |||||||||||| |||||||||||||||  || || || |    
T  3751733 gtcaaagggtcatcaaacatgttgactgaaccaaaa----taag--tggttgtgtttagcttcaatggtggtggaacaattgtaattgcagtgggatttt 3751826  T
Q  466 ttccacttagtatgtcgtgccagtagaatctaaaatggcttagtttt 512  Q
    | ||||| |  || || ||||| |||||||| ||||| |||||||||    
T  3751827 tcccactcaagatatcatgccaatagaatctgaaatgacttagtttt 3751873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 166 - 400
Target Start/End: Original strand, 3766928 - 3767162
Alignment:
Q  166 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc 265  Q
    |||| |||||||  ||||||||||| ||||| |||| || | | | |||||| ||||| |||||||  |||||||||||||||||||||||| | |||||    
T  3766928 cactaccaccaatcacaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgtacttccattatactttccttcagtaaaagc 3767027  T
Q  266 aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa 365  Q
    ||||||||| | || ||| ||| | | ||| || |   ||||||||||||||||||||||||||||||||||||  |||||| |||  | ||||||||||    
T  3767028 aaaattcatagccataagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttccaacaatcttagaattcaactgtggtcctaaa 3767127  T
Q  366 gtcaaagggttgtcaatcatgcggactaaaccaaa 400  Q
    || ||||||||||| |||||||||||| |||||||    
T  3767128 gttaaagggttgtcgatcatgcggactgaaccaaa 3767162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 312 - 512
Target Start/End: Original strand, 3771304 - 3771498
Alignment:
Q  312 gcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggc 411  Q
    |||| ||| ||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| |         
T  3771304 gcatcgaacccttgagattttccaacaagcttagaactcagttctggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaagcagt----- 3771398  T
Q  412 cggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttatttccacttagtatgtcgtgccagtagaatctaaaatggcttagttt 511  Q
     ||||| || |||||||| ||||||| |||||||| | |  |  | |||||| ||||||||   ||| ||||||||||||||||| ||||| ||||||||    
T  3771399 -ggttgtgtttagtttcattggtggtggaacaattattaccgaaggagggttttttccactcgctatctcgtgccagtagaatctgaaatgacttagttt 3771497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 287
Target Start/End: Original strand, 3789113 - 3789175
Alignment:
Q  225 atagtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaa 287  Q
    |||||||| || |||||||||||||||||||||| ||||||||| |||||  ||| |||||||    
T  3789113 atagtaatggtgcttccattatactttccttcaaacaaagcaaagttcataatcataagaaaa 3789175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 3845060 - 3845128
Alignment:
Q  219 cccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaa 287  Q
    |||||||||||||| || ||||||||||| || |||||||  || |||||||||||| ||| |||||||    
T  3845060 cccaagatagtaattgtgcttccattatatttcccttcaaataatgcaaaattcattatcataagaaaa 3845128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 274
Target Start/End: Original strand, 3770737 - 3770799
Alignment:
Q  212 attcctccccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaattcat 274  Q
    |||||| ||||| |||||||   ||||||||||||||||||||||| | ||| ||||||||||    
T  3770737 attccttcccaaaatagtaagtttacttccattatactttccttcagtaaaaacaaaattcat 3770799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 3851509 - 3851554
Alignment:
Q  223 agatagtaatagtacttccattatactttccttcaatcaaagcaaa 268  Q
    |||||||||| ||||| ||||||||||||||||||| ||| |||||    
T  3851509 agatagtaatggtactcccattatactttccttcaaacaaggcaaa 3851554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 49082812 - 49082741
Alignment:
Q  80 gttggattggaatataagtaagtatattgacattgacatacagtagtatttcttctccacacatgctgccacaggttc 157  Q
    ||||||||||||||||| |||||||||||||||      |||||||||||||||||||||||||||||||||| ||||    
T  49082812 gttggattggaatataaataagtatattgacat------acagtagtatttcttctccacacatgctgccacaagttc 49082741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 182 - 508
Target Start/End: Complemental strand, 25985591 - 25985274
Alignment:
Q  182 aggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtcaca 281  Q
    |||||| ||||||||||||| |  | | |||||||||||||| ||||| || || || ||||| ||||| |||||||| | |||||||||||| | ||      
T  25985591 aggcatttccctaaccttatcagaaacaggattcctccccaaaatagtgatggtgctaccattgtacttcccttcaattatagcaaaattcatagccatg 25985492  T
Q  282 agaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaaagggttgtcaa 381  Q
    | ||   |||  ||    |||||||  || |||||||||||||| ||||||||||| | ||| ||||||| ||  |||||||| || |||||||| ||||    
T  25985491 ataaggtctacctcactttgtgatgttgaggcatagaatccttgtgcttttccaaccaatttggaactcaattgaggtcctaaggttaaagggttctcaa 25985392  T
Q  382 tcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttatttccacttagtatgtc 481  Q
    |||||   ||||||||||||||| |      ||||||||    |||||| |||||| |||||||||  ||||  | |||||| |||||||| | ||||||    
T  25985391 tcatgttaactaaaccaaaagcagt------ggttgagt---ttttcaaaggtggtggaacaattggtattgaagaagggttgtttccactaactatgtc 25985301  T
Q  482 gtgccagtagaatctaaaatggcttag 508  Q
     ||||| |||||| | |||||||||||    
T  25985300 atgccaatagaattttaaatggcttag 25985274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 287
Target Start/End: Complemental strand, 10088 - 10020
Alignment:
Q  219 cccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaa 287  Q
    |||||||||||||| || ||||||||||| || |||||||  || |||||||||||| ||| |||||||    
T  10088 cccaagatagtaattgtgcttccattatatttcccttcaaataatgcaaaattcattatcataagaaaa 10020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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