View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0113_low_7 (Length: 530)

Name: NF0113_low_7
Description: NF0113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0113_low_7
NF0113_low_7
[»] chr4 (12 HSPs)
chr4 (164-510)||(3762512-3762858)
chr4 (164-399)||(3776593-3776828)
chr4 (164-401)||(3780906-3781143)
chr4 (169-506)||(3745721-3746052)
chr4 (164-510)||(3755400-3755740)
chr4 (164-510)||(3751533-3751873)
chr4 (164-398)||(3766928-3767162)
chr4 (310-510)||(3771304-3771498)
chr4 (223-285)||(3789113-3789175)
chr4 (217-285)||(3845060-3845128)
chr4 (210-272)||(3770737-3770799)
chr4 (221-266)||(3851509-3851554)
[»] chr7 (2 HSPs)
chr7 (78-155)||(49082741-49082812)
chr7 (180-506)||(25985274-25985591)
[»] scaffold0433 (1 HSPs)
scaffold0433 (217-285)||(10020-10088)


Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 164 - 510
Target Start/End: Original strand, 3762512 - 3762858
Alignment:
Q  164 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  3762512 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactaccattatactttccttcaatgaaagc 3762611  T
Q  264 aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa 363  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  3762612 aaaattcactgtcataagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagctcttccaacaagtttagaactcagttcgggtcctaaa 3762711  T
Q  364 gtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttat 463  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3762712 gtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttat 3762811  T
Q  464 ttccacttagtatgtcgtgccagtagaatctaaaatggcttagtttt 510  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  3762812 ttccacttagtatgtcatgccagtagaatctaaaatggcttagtttt 3762858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 164 - 399
Target Start/End: Original strand, 3776593 - 3776828
Alignment:
Q  164 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc 263  Q
    |||| ||||||||||||||||| ||||||||||||||| ||||  |||||||||||||||||||||| ||||| |||||||||||||||||||| |||||    
T  3776593 cactaccaccaacaacaggcatttccctaaccttattacgagcatgattcctccccaagatagtaatggtactaccattatactttccttcaatgaaagc 3776692  T
Q  264 aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa 363  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||| ||| |||||||||    
T  3776693 aaaattcattgtcataagaaaacctatttcttcctgtgaagcagatgcatagaatccttgagctctaccaacaagtttagaactcaattcgggtcctaaa 3776792  T
Q  364 gtcaaagggttgtcaatcatgcggactaaaccaaaa 399  Q
    || |||||||||||||||||||  ||||||||||||    
T  3776793 gttaaagggttgtcaatcatgctaactaaaccaaaa 3776828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 164 - 401
Target Start/End: Original strand, 3780906 - 3781143
Alignment:
Q  164 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc 263  Q
    |||| |||||||||||||||||||||||||||  |||||  || ||||||||||| | |||||||| |||||| |||||||||||||||||||| |||||    
T  3780906 cactaccaccaacaacaggcatctccctaaccaaattaatggcaggattcctccctacgatagtaagagtactaccattatactttccttcaatgaaagc 3781005  T
Q  264 aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa 363  Q
    |||||||||||||| ||||||||||| |||||| ||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  3781006 aaaattcattgtcataagaaaacctagttcttcttgtgaagcagatgcatagaatccttgagctcttccaacaagcttagaactcagttctggtcctaaa 3781105  T
Q  364 gtcaaagggttgtcaatcatgcggactaaaccaaaagc 401  Q
    || ||||||||||||||||||   || |||||||||||    
T  3781106 gttaaagggttgtcaatcatgttaaccaaaccaaaagc 3781143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 169 - 506
Target Start/End: Original strand, 3745721 - 3746052
Alignment:
Q  169 ccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaat 268  Q
    |||||||||| |||||| |||||||||||||||||||| | ||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||     
T  3745721 ccaccaacaataggcatttccctaaccttattaagagcagaatttctccccaagatagtaatagtactcccattatactttccttcaatgaaagcaaaag 3745820  T
Q  269 tcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaa 368  Q
    |||| | ||  |  ||||  |  || |||| ||||||||||||||| || |||||||||||||||||||| |||||||||| || |||||||||||| ||    
T  3745821 tcatagccatgaacaaactaaactcatcctttgatgcagatgcatacaacccttgagcttttccaacaagcttagaactcatttttggtcctaaagttaa 3745920  T
Q  369 agggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttatttcca 468  Q
    |||||||||||| |||  |||||||||||||| | ||      |||| || ||| ||||||||| || | |||| ||||||||  |||||||| ||||||    
T  3745921 agggttgtcaataatgttgactaaaccaaaagaagta------gttgtgtttagcttcaatggtagtggtacaactgtaattgaagtagggttttttcca 3746014  T
Q  469 cttagtatgtcgtgccagtagaatctaaaatggcttag 506  Q
    || |  ||||| |||||  ||||||| ||||| |||||    
T  3746015 ctcatgatgtcatgccaaaagaatctgaaatgacttag 3746052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 164 - 510
Target Start/End: Original strand, 3755400 - 3755740
Alignment:
Q  164 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc 263  Q
    |||| |||||||  ||||||||||| ||||| |||| || | | | |||||| ||||| |||||||  |||||||||||||||||||||||| | |||||    
T  3755400 cactaccaccaatcacaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgtacttccattatactttccttcagtaaaagc 3755499  T
Q  264 aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa 363  Q
    ||||||||| | || ||| ||| | | ||| || |   ||||||||||||||||||||||||||||||||||||  |||||| |||  | ||||||||||    
T  3755500 aaaattcatagccataagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttccaacaatcttagaattcaactgtggtcctaaa 3755599  T
Q  364 gtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttat 463  Q
    || ||||||||||| |||||||||||| ||||||| ||| |      |||||||| |||||||| ||||||| | |||| || || ||  |||||||| |    
T  3755600 gttaaagggttgtcgatcatgcggactgaaccaaaggcagt------ggttgagtttagtttcattggtggtgggacaactgcaactgaagtagggtttt 3755693  T
Q  464 ttccacttagtatgtcgtgccagtagaatctaaaatggcttagtttt 510  Q
    ||||||| | ||||||||||||||||||||| ||||| |||||||||    
T  3755694 ttccactcactatgtcgtgccagtagaatctgaaatgacttagtttt 3755740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 164 - 510
Target Start/End: Original strand, 3751533 - 3751873
Alignment:
Q  164 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc 263  Q
    |||| ||||||| || ||||||||| ||| ||||||||| | | | ||||||||||||||||||||| ||||| |||||||||||||||||||| |||||    
T  3751533 cactaccaccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatactttccttcaatgaaagc 3751632  T
Q  264 aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa 363  Q
    ||| ||||| | ||  |||||||| |  || || |||||||||||||||||||| |||||||||||||||||||| |||||||||| || |||||||| |    
T  3751633 aaagttcatagccatgagaaaaccaaaatcatcttgtgatgcagatgcatagaaaccttgagcttttccaacaagcttagaactcaattgtggtcctata 3751732  T
Q  364 gtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttat 463  Q
    ||||||||||  |||| ||||  |||| ||||||||    ||||   ||||| || ||| |||||||||||| |||||||||||||||  || || || |    
T  3751733 gtcaaagggtcatcaaacatgttgactgaaccaaaa----taag--tggttgtgtttagcttcaatggtggtggaacaattgtaattgcagtgggatttt 3751826  T
Q  464 ttccacttagtatgtcgtgccagtagaatctaaaatggcttagtttt 510  Q
    | ||||| |  || || ||||| |||||||| ||||| |||||||||    
T  3751827 tcccactcaagatatcatgccaatagaatctgaaatgacttagtttt 3751873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 164 - 398
Target Start/End: Original strand, 3766928 - 3767162
Alignment:
Q  164 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagc 263  Q
    |||| |||||||  ||||||||||| ||||| |||| || | | | |||||| ||||| |||||||  |||||||||||||||||||||||| | |||||    
T  3766928 cactaccaccaatcacaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgtacttccattatactttccttcagtaaaagc 3767027  T
Q  264 aaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaa 363  Q
    ||||||||| | || ||| ||| | | ||| || |   ||||||||||||||||||||||||||||||||||||  |||||| |||  | ||||||||||    
T  3767028 aaaattcatagccataagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttccaacaatcttagaattcaactgtggtcctaaa 3767127  T
Q  364 gtcaaagggttgtcaatcatgcggactaaaccaaa 398  Q
    || ||||||||||| |||||||||||| |||||||    
T  3767128 gttaaagggttgtcgatcatgcggactgaaccaaa 3767162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 310 - 510
Target Start/End: Original strand, 3771304 - 3771498
Alignment:
Q  310 gcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggc 409  Q
    |||| ||| ||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| |         
T  3771304 gcatcgaacccttgagattttccaacaagcttagaactcagttctggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaagcagt----- 3771398  T
Q  410 cggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttatttccacttagtatgtcgtgccagtagaatctaaaatggcttagttt 509  Q
     ||||| || |||||||| ||||||| |||||||| | |  |  | |||||| ||||||||   ||| ||||||||||||||||| ||||| ||||||||    
T  3771399 -ggttgtgtttagtttcattggtggtggaacaattattaccgaaggagggttttttccactcgctatctcgtgccagtagaatctgaaatgacttagttt 3771497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 3789113 - 3789175
Alignment:
Q  223 atagtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaa 285  Q
    |||||||| || |||||||||||||||||||||| ||||||||| |||||  ||| |||||||    
T  3789113 atagtaatggtgcttccattatactttccttcaaacaaagcaaagttcataatcataagaaaa 3789175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 3845060 - 3845128
Alignment:
Q  217 cccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaa 285  Q
    |||||||||||||| || ||||||||||| || |||||||  || |||||||||||| ||| |||||||    
T  3845060 cccaagatagtaattgtgcttccattatatttcccttcaaataatgcaaaattcattatcataagaaaa 3845128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 210 - 272
Target Start/End: Original strand, 3770737 - 3770799
Alignment:
Q  210 attcctccccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaattcat 272  Q
    |||||| ||||| |||||||   ||||||||||||||||||||||| | ||| ||||||||||    
T  3770737 attccttcccaaaatagtaagtttacttccattatactttccttcagtaaaaacaaaattcat 3770799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 266
Target Start/End: Original strand, 3851509 - 3851554
Alignment:
Q  221 agatagtaatagtacttccattatactttccttcaatcaaagcaaa 266  Q
    |||||||||| ||||| ||||||||||||||||||| ||| |||||    
T  3851509 agatagtaatggtactcccattatactttccttcaaacaaggcaaa 3851554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 49082812 - 49082741
Alignment:
Q  78 gttggattggaatataagtaagtatattgacattgacatacagtagtatttcttctccacacatgctgccacaggttc 155  Q
    ||||||||||||||||| |||||||||||||||      |||||||||||||||||||||||||||||||||| ||||    
T  49082812 gttggattggaatataaataagtatattgacat------acagtagtatttcttctccacacatgctgccacaagttc 49082741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 180 - 506
Target Start/End: Complemental strand, 25985591 - 25985274
Alignment:
Q  180 aggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtcaca 279  Q
    |||||| ||||||||||||| |  | | |||||||||||||| ||||| || || || ||||| ||||| |||||||| | |||||||||||| | ||      
T  25985591 aggcatttccctaaccttatcagaaacaggattcctccccaaaatagtgatggtgctaccattgtacttcccttcaattatagcaaaattcatagccatg 25985492  T
Q  280 agaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaaagggttgtcaa 379  Q
    | ||   |||  ||    |||||||  || |||||||||||||| ||||||||||| | ||| ||||||| ||  |||||||| || |||||||| ||||    
T  25985491 ataaggtctacctcactttgtgatgttgaggcatagaatccttgtgcttttccaaccaatttggaactcaattgaggtcctaaggttaaagggttctcaa 25985392  T
Q  380 tcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttatttccacttagtatgtc 479  Q
    |||||   ||||||||||||||| |      ||||||||    |||||| |||||| |||||||||  ||||  | |||||| |||||||| | ||||||    
T  25985391 tcatgttaactaaaccaaaagcagt------ggttgagt---ttttcaaaggtggtggaacaattggtattgaagaagggttgtttccactaactatgtc 25985301  T
Q  480 gtgccagtagaatctaaaatggcttag 506  Q
     ||||| |||||| | |||||||||||    
T  25985300 atgccaatagaattttaaatggcttag 25985274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 10088 - 10020
Alignment:
Q  217 cccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaa 285  Q
    |||||||||||||| || ||||||||||| || |||||||  || |||||||||||| ||| |||||||    
T  10088 cccaagatagtaattgtgcttccattatatttcccttcaaataatgcaaaattcattatcataagaaaa 10020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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