View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0114_low_1 (Length: 423)
Name: NF0114_low_1
Description: NF0114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0114_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 15 - 416
Target Start/End: Original strand, 928079 - 928480
Alignment:
| Q |
15 |
agttggagatcattagaaagaacactaaacatgatcatatctctgctttttcctttcatgaccaaatacttcctaagagttccctccttttggaaaccag |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
928079 |
agttggagatcattagaaagaacactaaacatgatcatatctctgctttttcctttcatgaccaaatacttcctaagagttccctccttttggaaaccag |
928178 |
T |
|
| Q |
115 |
ctttctccaaaaccctttgagacccaacattttccacatcaacaagagcttcaagcctttccaagtacgaaaattcatcgaatgcaatcttaacaatttg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
928179 |
ctttctccaaaaccctttgagacccaacattttccacatcaacaagagcttcaagcctttccaagtacgaaaattcatcgaatgcaatcttaacaatttg |
928278 |
T |
|
| Q |
215 |
tttcacagcacatgtgacaatccctttacaccaatatttagagcttagattatagccaagttctgcagattgtttcctgcttttatcttcaggtgtgaac |
314 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
928279 |
tttcacagcacatgtgacaatccctttaccccaatatttagagcttagattatagccaagttctgcagattgtttcctgcttttatcttcaggtgtgaac |
928378 |
T |
|
| Q |
315 |
aaaagaacacagccaatagcacgatcattaatgcatattgctttgcaacaaagaaacttgctttctatactttctatgaagttgatgccatcttctctgc |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
928379 |
aaaagaacacagccaatagcacgatcattaatgcatattgctttgcaacaaagaaacttgctttctatactttctatgaagttgatgccatcttctctgc |
928478 |
T |
|
| Q |
415 |
tg |
416 |
Q |
| |
|
|| |
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|
| T |
928479 |
tg |
928480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 15 - 416
Target Start/End: Original strand, 938998 - 939405
Alignment:
| Q |
15 |
agttggagatcattagaaagaacactaaacatgatcatatctctgctttttcctttcatgaccaaatacttcctaagagttccctccttttggaaaccag |
114 |
Q |
| |
|
|||||||||||| ||||||||||||| || || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
938998 |
agttggagatcagtagaaagaacactgaaaataatcatatctctgctttttcctttcatgaccaaatacttcccaagagttccctccttttggaaaccag |
939097 |
T |
|
| Q |
115 |
ctttctccaaaaccctttgagacccaacattttccacatcaacaagagcttcaagcctttccaagtacgaaaattcatcgaatgcaatcttaacaatttg |
214 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||| || || ||| |||||||| |||||| | ||| |
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|
| T |
939098 |
ctttctccaaaaccctttgagatccaacattttccacatcaacaaaagcttcaactctttccaagtgtgacaactcactgaatgcaaccttaactacttg |
939197 |
T |
|
| Q |
215 |
tttcacagcacatgtgacaatccctttacaccaatatttagagcttagattatagccaagttctgcagattgtttcctgcttttatcttcaggtg----t |
310 |
Q |
| |
|
||||||| || | ||| | || ||||||| ||| ||||||||| |||| |||| |||||||||||| || |||||||||||||| | ||||| | |
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|
| T |
939198 |
tttcacaacatacgtggctattcctttaccccagtatttagaggctagaacataggcaagttctgcagttttgttcctgcttttatcatgaggtgatctt |
939297 |
T |
|
| Q |
311 |
ga--acaaaagaacacagccaatagcacgatcattaatgcatattgctttgcaacaaagaaacttgctttctatactttctatgaagttgatgccatctt |
408 |
Q |
| |
|
|| || | ||||| |||||||||||||| |||| ||||||||||||||| || ||||||||| || |||| |||| |||||| ||||||| | || |
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|
| T |
939298 |
gatttcagagaaacacggccaatagcacgattgttaaggcatattgctttgcaccatagaaacttgtttggtatattttcaatgaagctgatgccttgtt |
939397 |
T |
|
| Q |
409 |
ctctgctg |
416 |
Q |
| |
|
|| ||||| |
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|
| T |
939398 |
ctttgctg |
939405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 15 - 406
Target Start/End: Original strand, 923718 - 924115
Alignment:
| Q |
15 |
agttggagatcattagaaagaacactaaacatgatcatatctctgctttttcctttcatgaccaaatacttcctaagagttccctccttttggaaaccag |
114 |
Q |
| |
|
|||||| ||||| || | |||||||| | |||||||||||||| ||||||||||||||||||||||| ||||||||| |||||| ||||||||||||| |
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|
| T |
923718 |
agttggggatcagtaaagagaacactggagatgatcatatctctactttttcctttcatgaccaaatatttcctaagaactccctctttttggaaaccag |
923817 |
T |
|
| Q |
115 |
ctttctccaaaaccctttgagacccaacattttccacatcaacaagagcttcaagcctttccaagtacgaaaattcatcgaatgcaatcttaacaatttg |
214 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| || || ||| |||||||| |||||| | ||| |
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|
| T |
923818 |
ctttctccaaaactctttgagacccagcattttccacatcaacaagagcttcaagcctttccaagtaagacaactcacagaatgcaaccttaaccacttg |
923917 |
T |
|
| Q |
215 |
tttcacagcacatgtgacaatccctttacaccaatatttagagcttagattatagccaagttctgcagattgtttcctgcttttatcttcaggt------ |
308 |
Q |
| |
|
||||||| |||| ||| ||| |||||||| |||||||||||||| |||| |||||||||||||||| ||| |||||| |||||| ||||| |
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|
| T |
923918 |
tttcacaacacaagtggcaacccctttaccccaatatttagagcctagaacatagccaagttctgcacatttgttcctggatttatcaccaggtgaactc |
924017 |
T |
|
| Q |
309 |
gtgaacaaaagaacacagccaatagcacgatcattaatgcatattgctttgcaacaaagaaacttgctttctatactttctatgaagttgatgccatc |
406 |
Q |
| |
|
| | | | | |||||| ||||| ||||||||||| ||||||||||||||||| || ||||||||| | | ||| |||| ||||||||||||||||| |
|
|
| T |
924018 |
gaggatagagaaacacacccaattgcacgatcattgatgcatattgctttgcaccatagaaacttggtagcaatattttcaatgaagttgatgccatc |
924115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 935209 - 935451
Alignment:
| Q |
15 |
agttggagatcattagaaagaacactaaacatgatcatatctctgctttttcctttcatgaccaaatacttcctaagagttccctccttttggaaaccag |
114 |
Q |
| |
|
||||| |||||| || |||||| ||| ||||||||||||||||||||||||||||| | || | ||||||||||||| ||||| ||||| |||||| |
|
|
| T |
935209 |
agttgaagatcagtaaaaagaagactgaacatgatcatatctctgctttttcctttaaagaatacatacttcctaagaagcccctctttttgaaaaccaa |
935308 |
T |
|
| Q |
115 |
ctttctccaaaaccctttgagacccaacattttccacatcaacaagagcttcaagcctttccaagtacgaaaattcatcgaatgcaatcttaacaatttg |
214 |
Q |
| |
|
||||||| | || |||| ||||||||||| |||| |||||||||||||| ||||||||||||| | ||||||| |||||||| |||||| ||||| |
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|
| T |
935309 |
ctttctcaagtactttttgcgacccaacattatccatatcaacaagagcttgaagcctttccaaggattgaaattcactgaatgcaaccttaaccatttg |
935408 |
T |
|
| Q |
215 |
tttcacagcacatgtgacaatccctttacaccaatatttagag |
257 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
935409 |
tttcacagcacatgtggcaatccctttaccccaatatttagag |
935451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 23 - 257
Target Start/End: Original strand, 925755 - 925995
Alignment:
| Q |
23 |
atcattagaaagaacactaaacatgatcatatctctgctttttcctttcatgaccaaatacttcctaagagttccctccttttggaaaccagctttctcc |
122 |
Q |
| |
|
|||| ||||||||| ||| ||||||||||||||||||||||||||||| | || | |||||| |||||| |||||| ||||| |||||| |||| || |
|
|
| T |
925755 |
atcagtagaaagaagactgaacatgatcatatctctgctttttcctttaaagaatacatactttctaagaactccctctttttgaaaaccaactttttca |
925854 |
T |
|
| Q |
123 |
aaaaccctttgagacccaacattttccacatcaacaagagcttcaagcctttccaagtacgaaaattcatcgaatgc------aatcttaacaatttgtt |
216 |
Q |
| |
|
| || ||||| ||||||||||| |||||||||||||||||||||||||||||||| || ||||||||| |||||| || | |||| ||||||| |
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|
| T |
925855 |
agtactctttgtgacccaacattatccacatcaacaagagcttcaagcctttccaaatatgaaaattcactgaatgcaaatgtaaccataaccatttgtt |
925954 |
T |
|
| Q |
217 |
tcacagcacatgtgacaatccctttacaccaatatttagag |
257 |
Q |
| |
|
|||||||||| ||| |||||||||||| ||| ||||||||| |
|
|
| T |
925955 |
tcacagcacacgtggcaatccctttaccccagtatttagag |
925995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 58 - 383
Target Start/End: Original strand, 940075 - 940404
Alignment:
| Q |
58 |
tgctttttcctttcatgaccaaatacttcctaagagttccctccttttggaaaccagctttctccaaaaccctttgagacccaacattttccacatcaac |
157 |
Q |
| |
|
||||||| ||||||||| || |||||| || || ||| ||||||||||||||||||||||||| || || |||||||||| ||||||||||| | |
|
|
| T |
940075 |
tgcttttccctttcatgttcagatactttctgagtactccttccttttggaaaccagctttctccagcactctcagagacccaacgttttccacatctaa |
940174 |
T |
|
| Q |
158 |
aagagcttcaagcctttccaagtacgaaaattcatcgaatgcaatcttaacaatttgtttcacagcacatgtgacaatccctttaca-ccaatatttaga |
256 |
Q |
| |
|
||| |||||||||||||| || | ||| ||| |||||||| |||||| | ||||||||||||||||||| |||||||||||| |||||||||| | |
|
|
| T |
940175 |
taga--ttcaagcctttccatgtgtggaaactcactgaatgcaaccttaactacttgtttcacagcacatgtggaaatccctttacacccaatatttata |
940272 |
T |
|
| Q |
257 |
gcttagattatagccaagttctgcagattgtttcctgcttttatcttcaggt------gtgaacaaaagaacacagccaatagcacgatcattaatgcat |
350 |
Q |
| |
|
|| |||| ||||||||||||| || ||| ||||||| || ||| | |||| | ||||||| ||| || || |||| ||||||||| | |||| |
|
|
| T |
940273 |
gcctagaacatagccaagttctacacatttgttcctgcattcatcgt-aggtaatctcgaaaacaaaataactcacccgatagtacgatcattgaggcat |
940371 |
T |
|
| Q |
351 |
attgctttgcaacaaagaaacttgctttctata |
383 |
Q |
| |
|
|||| ||||||||| ||| |||||||||||||| |
|
|
| T |
940372 |
attgttttgcaacatagatacttgctttctata |
940404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 96 - 294
Target Start/End: Original strand, 46648079 - 46648277
Alignment:
| Q |
96 |
ccctccttttggaaaccagctttctccaaaaccctttgagacccaacattttccacatcaacaagagcttcaagcctttccaagtacgaaaattcatcga |
195 |
Q |
| |
|
|||||| |||| |||||||| |||||||| || || ||||| | | ||||||||||||||| |||||||||||||||||||||| | ||| || | | |
|
|
| T |
46648079 |
ccctccctttgaaaaccagccttctccaatactctctgagaagccatattttccacatcaacttgagcttcaagcctttccaagtatggaaactccttaa |
46648178 |
T |
|
| Q |
196 |
atgcaatcttaacaatttgtttcacagcacatgtgacaatccctttacaccaatatttagagcttagattatagccaagttctgcagattgtttcctgc |
294 |
Q |
| |
|
||||| | ||| | |||||| ||| || |||| |||||||||| | |||||| || ||||| | | |||||||||||| ||||||| ||||||| |
|
|
| T |
46648179 |
atgcagcttcaaccacttgtttgacaacaagtgtggcaatccctttgccccaatacttggagctcatagcatagccaagttcagcagatttgttcctgc |
46648277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 181
Target Start/End: Original strand, 46656419 - 46656492
Alignment:
| Q |
108 |
aaaccagctttctccaaaaccctttgagacccaacattttccacatcaacaagagcttcaagcctttccaagta |
181 |
Q |
| |
|
|||||||| |||||||| ||||||||||| | ||||||||||||||||| |||| |||||||| |||||||| |
|
|
| T |
46656419 |
aaaccagccttctccaacaccctttgagaagccacattttccacatcaactcgagcctcaagcctctccaagta |
46656492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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