View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0114_low_2 (Length: 315)

Name: NF0114_low_2
Description: NF0114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0114_low_2
NF0114_low_2
[»] chr3 (10 HSPs)
chr3 (93-298)||(26643128-26643345)
chr3 (249-298)||(8091430-8091479)
chr3 (243-298)||(21768598-21768653)
chr3 (243-294)||(35990537-35990588)
chr3 (177-212)||(42252185-42252220)
chr3 (243-298)||(51497982-51498037)
chr3 (176-217)||(3015019-3015060)
chr3 (179-232)||(34002304-34002357)
chr3 (248-280)||(42088890-42088922)
chr3 (266-302)||(55053769-55053805)
[»] scaffold0091 (1 HSPs)
scaffold0091 (175-263)||(7598-7686)
[»] chr8 (3 HSPs)
chr8 (175-263)||(5228181-5228269)
chr8 (243-284)||(29096952-29096993)
chr8 (175-207)||(11818224-11818256)
[»] chr5 (7 HSPs)
chr5 (182-297)||(28322234-28322349)
chr5 (243-283)||(35972042-35972082)
chr5 (232-282)||(14981364-14981414)
chr5 (177-207)||(33267922-33267952)
chr5 (249-282)||(18698514-18698547)
chr5 (214-262)||(29200943-29200991)
chr5 (244-272)||(36929031-36929059)
[»] chr1 (5 HSPs)
chr1 (243-298)||(26462657-26462712)
chr1 (177-219)||(303747-303789)
chr1 (257-298)||(16808976-16809017)
chr1 (253-289)||(27424784-27424820)
chr1 (251-283)||(44247640-44247672)
[»] chr6 (3 HSPs)
chr6 (228-285)||(2468469-2468527)
chr6 (215-272)||(32908381-32908438)
chr6 (249-281)||(32694776-32694808)
[»] chr4 (4 HSPs)
chr4 (180-270)||(15172672-15172762)
chr4 (228-285)||(27131669-27131727)
chr4 (243-279)||(24875735-24875771)
chr4 (241-289)||(23312457-23312505)
[»] chr7 (2 HSPs)
chr7 (246-282)||(9483392-9483428)
chr7 (246-291)||(505094-505139)
[»] chr2 (5 HSPs)
chr2 (243-283)||(41508543-41508583)
chr2 (247-298)||(33498620-33498671)
chr2 (248-298)||(6736482-6736532)
chr2 (178-206)||(19173878-19173906)
chr2 (178-222)||(32541218-32541262)
[»] scaffold0144 (1 HSPs)
scaffold0144 (180-222)||(4335-4377)
[»] scaffold0001 (1 HSPs)
scaffold0001 (225-282)||(398645-398703)
[»] scaffold0205 (1 HSPs)
scaffold0205 (243-283)||(21423-21463)


Alignment Details
Target: chr3 (Bit Score: 161; Significance: 7e-86; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 93 - 298
Target Start/End: Original strand, 26643128 - 26643345
Alignment:
Q  93 aactacatcacgtacacatcattttcacaatatgctattcgaaatttgaagagaatagtttctaattca------------agattttgttggaatctat 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||  |||||||||||    
T  26643128 aactacatcacgtacacatcattttcacaatatgctattcgaaatttgaagagaatagtttctaattcatgatttgatctaagatttacttggaatctat 26643227  T
Q  181 gtagcaccgacacttcagattgaaggcttgtccggtgtctgataccgacacggcaccaataaatgtggttacattcaattattctattttcttaaattat 280  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26643228 gtagcaccgacacttcagattgaaggtttgtccggtgtctgatagcgacacggcaccaataaatgtggttacattcaattattctattttcttaaattat 26643327  T
Q  281 taccagtatcgacgtgtc 298  Q
    ||||||||||||||||||    
T  26643328 taccagtatcgacgtgtc 26643345  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 8091430 - 8091479
Alignment:
Q  249 ttacattcaattattctattttcttaaattattaccagtatcgacgtgtc 298  Q
    ||||||||||| || |||||||||||||||||||||||| ||||| ||||    
T  8091430 ttacattcaataatcctattttcttaaattattaccagtgtcgacttgtc 8091479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 298
Target Start/End: Complemental strand, 21768653 - 21768598
Alignment:
Q  243 atgtggttacattcaattattctattttcttaaattattaccagtatcgacgtgtc 298  Q
    |||||||||| ||||| || |  ||||||| |||||||||||||||||||||||||    
T  21768653 atgtggttacgttcaaataattcattttctcaaattattaccagtatcgacgtgtc 21768598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 294
Target Start/End: Original strand, 35990537 - 35990588
Alignment:
Q  243 atgtggttacattcaattattctattttcttaaattattaccagtatcgacg 294  Q
    ||||||||||||||| ||||| |||||||| ||||||||| |||| ||||||    
T  35990537 atgtggttacattcagttattttattttctcaaattattatcagtgtcgacg 35990588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 212
Target Start/End: Original strand, 42252185 - 42252220
Alignment:
Q  177 ctatgtagcaccgacacttcagattgaaggcttgtc 212  Q
    ||||||||||||||||||||||||||||||| ||||    
T  42252185 ctatgtagcaccgacacttcagattgaaggcatgtc 42252220  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 298
Target Start/End: Complemental strand, 51498037 - 51497982
Alignment:
Q  243 atgtggttacattcaattattctattttcttaaattattaccagtatcgacgtgtc 298  Q
    |||| ||||||||||||||||||||||| | |||||||||| ||| | ||||||||    
T  51498037 atgtagttacattcaattattctattttatcaaattattactagtgtggacgtgtc 51497982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 3015060 - 3015019
Alignment:
Q  176 tctatgtagcaccgacacttcagattgaaggcttgtccggtg 217  Q
    |||||||||||| ||||||||||||||||| | |||||||||    
T  3015060 tctatgtagcactgacacttcagattgaagacgtgtccggtg 3015019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 34002357 - 34002304
Alignment:
Q  179 atgtagcaccgacacttcagattgaaggcttgtccggtgtctgataccgacacg 232  Q
    |||||||||||||||||||||||||| | |||||| || || || |||||||||    
T  34002357 atgtagcaccgacacttcagattgaaagattgtccagtttccgacaccgacacg 34002304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 280
Target Start/End: Complemental strand, 42088922 - 42088890
Alignment:
Q  248 gttacattcaattattctattttcttaaattat 280  Q
    |||||||||||||||| ||||||||||||||||    
T  42088922 gttacattcaattattttattttcttaaattat 42088890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 302
Target Start/End: Complemental strand, 55053805 - 55053769
Alignment:
Q  266 attttcttaaattattaccagtatcgacgtgtctgtg 302  Q
    |||||||||||||||||||| | ||||||||||||||    
T  55053805 attttcttaaattattaccactctcgacgtgtctgtg 55053769  T

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Target: scaffold0091 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 263
Target Start/End: Complemental strand, 7686 - 7598
Alignment:
Q  175 atctatgtagcaccgacacttcagattgaaggcttgtccggtgtctgataccgacacggcaccaataaatgtggttacattcaattatt 263  Q
    ||||||||||||||||||||||||||||||||| | ||| ||||| || |  |||||| |||    |||||||||||| ||||||||||    
T  7686 atctatgtagcaccgacacttcagattgaaggcgtatccagtgtccgacaatgacacgacactgccaaatgtggttaccttcaattatt 7598  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 263
Target Start/End: Complemental strand, 5228269 - 5228181
Alignment:
Q  175 atctatgtagcaccgacacttcagattgaaggcttgtccggtgtctgataccgacacggcaccaataaatgtggttacattcaattatt 263  Q
    ||||||||||||||||||||||||||||||||| | ||| ||||| || |  |||||| |||    |||||||||||| ||||||||||    
T  5228269 atctatgtagcaccgacacttcagattgaaggcgtatccagtgtccgacaatgacacgacactgccaaatgtggttaccttcaattatt 5228181  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 29096993 - 29096952
Alignment:
Q  243 atgtggttacattcaattattctattttcttaaattattacc 284  Q
    ||||| ||||||||||||| | ||||||||||||||||||||    
T  29096993 atgtgattacattcaattaatttattttcttaaattattacc 29096952  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 11818224 - 11818256
Alignment:
Q  175 atctatgtagcaccgacacttcagattgaaggc 207  Q
    ||||||||||||| |||||||||||||||||||    
T  11818224 atctatgtagcactgacacttcagattgaaggc 11818256  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 297
Target Start/End: Complemental strand, 28322349 - 28322234
Alignment:
Q  182 tagcaccgacacttcagattgaaggcttgtccggtgtctgataccgacacggcaccaataaatgtggttacattcaattattctattttcttaaattatt 281  Q
    ||||||||||||||| ||| |||||| ||||| || || || | ||||||  |||||| | ||||| ||||||||||||| |  ||||||| |||||||     
T  28322349 tagcaccgacacttctgatcgaaggcatgtccagtatccgacatcgacactacaccaacacatgtgattacattcaattaattcattttctcaaattatc 28322250  T
Q  282 accagtatcgacgtgt 297  Q
    || ||| |||||||||    
T  28322249 actagtgtcgacgtgt 28322234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 35972042 - 35972082
Alignment:
Q  243 atgtggttacattcaattattctattttcttaaattattac 283  Q
    ||||| |||||||||||||||||||||| ||||||||||||    
T  35972042 atgtgattacattcaattattctattttattaaattattac 35972082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 282
Target Start/End: Original strand, 14981364 - 14981414
Alignment:
Q  232 ggcaccaataaatgtggttacattcaattattctattttcttaaattatta 282  Q
    |||||||| |||||| | ||||||||||| | |||||||||||||||||||    
T  14981364 ggcaccaacaaatgtagctacattcaattgtactattttcttaaattatta 14981414  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 207
Target Start/End: Complemental strand, 33267952 - 33267922
Alignment:
Q  177 ctatgtagcaccgacacttcagattgaaggc 207  Q
    |||||||||||||||||||||||||||||||    
T  33267952 ctatgtagcaccgacacttcagattgaaggc 33267922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 282
Target Start/End: Original strand, 18698514 - 18698547
Alignment:
Q  249 ttacattcaattattctattttcttaaattatta 282  Q
    ||||||||||||||| ||||||||||||||||||    
T  18698514 ttacattcaattattttattttcttaaattatta 18698547  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 29200943 - 29200991
Alignment:
Q  214 ggtgtctgataccgacacggcaccaataaatgtggttacattcaattat 262  Q
    ||||||||||||| | |||||||||| | ||||| ||||||||||||||    
T  29200943 ggtgtctgataccaaaacggcaccaacacatgtgattacattcaattat 29200991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 36929031 - 36929059
Alignment:
Q  244 tgtggttacattcaattattctattttct 272  Q
    |||||||||||||||||||||||||||||    
T  36929031 tgtggttacattcaattattctattttct 36929059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 26462657 - 26462712
Alignment:
Q  243 atgtggttacattcaattattctattttcttaaattattaccagtatcgacgtgtc 298  Q
    ||||| |||||||||||||||  ||||||||||||||||| |||| ||||||||||    
T  26462657 atgtgattacattcaattatttcattttcttaaattattatcagtgtcgacgtgtc 26462712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 303789 - 303747
Alignment:
Q  177 ctatgtagcaccgacacttcagattgaaggcttgtccggtgtc 219  Q
    |||||||||||| |||||||||||||||||| |||||| ||||    
T  303789 ctatgtagcaccaacacttcagattgaaggcatgtccgttgtc 303747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 298
Target Start/End: Original strand, 16808976 - 16809017
Alignment:
Q  257 aattattctattttcttaaattattaccagtatcgacgtgtc 298  Q
    |||||||||||||||||||||||||||| || |||| |||||    
T  16808976 aattattctattttcttaaattattaccggtgtcgatgtgtc 16809017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 27424784 - 27424820
Alignment:
Q  253 attcaattattctattttcttaaattattaccagtat 289  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  27424784 attcaatcattctattttcttaaattattactagtat 27424820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 283
Target Start/End: Original strand, 44247640 - 44247672
Alignment:
Q  251 acattcaattattctattttcttaaattattac 283  Q
    |||||||||||||||||||||| ||||||||||    
T  44247640 acattcaattattctattttctcaaattattac 44247672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 2468469 - 2468527
Alignment:
Q  228 acacggcaccaataaatgtggttacattcaatta-ttctattttcttaaattattacca 285  Q
    ||||| |||||| | ||||||||||||||||||| ||| ||||||||||||||||||||    
T  2468469 acacgacaccaacacatgtggttacattcaattacttccattttcttaaattattacca 2468527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 272
Target Start/End: Complemental strand, 32908438 - 32908381
Alignment:
Q  215 gtgtctgataccgacacggcaccaataaatgtggttacattcaattattctattttct 272  Q
    |||||||||||| ||| | |||| | | | ||||||||||||||||||||||||||||    
T  32908438 gtgtctgataccaacatgacaccgacacacgtggttacattcaattattctattttct 32908381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 281
Target Start/End: Original strand, 32694776 - 32694808
Alignment:
Q  249 ttacattcaattattctattttcttaaattatt 281  Q
    |||||||||||||||||||||||| ||||||||    
T  32694776 ttacattcaattattctattttctcaaattatt 32694808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 270
Target Start/End: Original strand, 15172672 - 15172762
Alignment:
Q  180 tgtagcaccgacacttcagattgaaggcttgtccggtgtctgataccgacacggcaccaataaatgtggttacattcaattattctatttt 270  Q
    |||| ||||||||  ||||||||||||| ||||  |||||||| || |||||  |||| | | |||||||||||||||||||||| |||||    
T  15172672 tgtaacaccgacaaatcagattgaaggcgtgtcttgtgtctgacactgacacaacaccgacatatgtggttacattcaattattcaatttt 15172762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 27131669 - 27131727
Alignment:
Q  228 acacggcaccaataaatgtggttacattcaatta-ttctattttcttaaattattacca 285  Q
    ||||| |||||| | ||||||||||||||||||| ||| ||||||||||||||||||||    
T  27131669 acacgacaccaacacatgtggttacattcaattacttccattttcttaaattattacca 27131727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 24875771 - 24875735
Alignment:
Q  243 atgtggttacattcaattattctattttcttaaatta 279  Q
    |||||||||||||||||||||||||||||| ||||||    
T  24875771 atgtggttacattcaattattctattttctcaaatta 24875735  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 289
Target Start/End: Complemental strand, 23312505 - 23312457
Alignment:
Q  241 aaatgtggttacattcaattattctattttcttaaattattaccagtat 289  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| ||||||||    
T  23312505 aaatgtgattacattcaataattcaattttctcaaattataaccagtat 23312457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 9483428 - 9483392
Alignment:
Q  246 tggttacattcaattattctattttcttaaattatta 282  Q
    ||||||||||||||||||||||||||| |||||||||    
T  9483428 tggttacattcaattattctattttctcaaattatta 9483392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 505094 - 505139
Alignment:
Q  246 tggttacattcaattattctattttcttaaattattaccagtatcg 291  Q
    |||||||||| |||||||  |||||||||||||||||| |||||||    
T  505094 tggttacatttaattatttcattttcttaaattattacaagtatcg 505139  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 41508583 - 41508543
Alignment:
Q  243 atgtggttacattcaattattctattttcttaaattattac 283  Q
    |||| ||||||||||||||||||||||||| ||||||||||    
T  41508583 atgtagttacattcaattattctattttctcaaattattac 41508543  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 298
Target Start/End: Complemental strand, 33498671 - 33498620
Alignment:
Q  247 ggttacattcaattattctattttcttaaattattaccagtatcgacgtgtc 298  Q
    |||||||||||||||||| ||||||| ||||||||||  || ||||||||||    
T  33498671 ggttacattcaattattccattttctcaaattattacttgtgtcgacgtgtc 33498620  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 6736532 - 6736482
Alignment:
Q  248 gttacattcaattattctattttcttaaattattaccagtatcgacgtgtc 298  Q
    ||||||||||||||||| || |||| ||||||||||| || ||||||||||    
T  6736532 gttacattcaattattccatattctcaaattattaccggtgtcgacgtgtc 6736482  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 206
Target Start/End: Complemental strand, 19173906 - 19173878
Alignment:
Q  178 tatgtagcaccgacacttcagattgaagg 206  Q
    |||||||||||||||||||||||||||||    
T  19173906 tatgtagcaccgacacttcagattgaagg 19173878  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 32541218 - 32541262
Alignment:
Q  178 tatgtagcaccgacacttcagattgaaggcttgtccggtgtctga 222  Q
    ||||||||||||||||||  |||||||||| |||| |||||||||    
T  32541218 tatgtagcaccgacactttggattgaaggcgtgtctggtgtctga 32541262  T

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Target: scaffold0144 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 4335 - 4377
Alignment:
Q  180 tgtagcaccgacacttcagattgaaggcttgtccggtgtctga 222  Q
    |||||||||||||||||||||  ||||||||||| ||||||||    
T  4335 tgtagcaccgacacttcagatacaaggcttgtcctgtgtctga 4377  T

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Target: scaffold0001 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 282
Target Start/End: Complemental strand, 398703 - 398645
Alignment:
Q  225 ccgacacggcaccaataaatgtggttacattcaatta-ttctattttcttaaattatta 282  Q
    |||||||  |||||||| | ||||||||||||||||| ||| |||||||||||||||||    
T  398703 ccgacacaacaccaatacacgtggttacattcaattacttcaattttcttaaattatta 398645  T

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Target: scaffold0205 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 21463 - 21423
Alignment:
Q  243 atgtggttacattcaattattctattttcttaaattattac 283  Q
    ||||||||||||||||||||| |||||||| ||| ||||||    
T  21463 atgtggttacattcaattattttattttctcaaactattac 21423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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