View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0114_low_4 (Length: 269)
Name: NF0114_low_4
Description: NF0114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0114_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 44 - 260
Target Start/End: Complemental strand, 8295195 - 8294979
Alignment:
| Q |
44 |
atagttactaacaaaaactaccctatcttccagcttcacattcttccactcaatatgatccttgtttgtgaccagtttgaacaattcaaagccagtaacc |
143 |
Q |
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| T |
8295195 |
atagttactaacaaaaactaccctatcttccagcttcacattcttccactcaatatgatccttgtttgtgaccagtttgaacaattcaaagccagtaacc |
8295096 |
T |
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| Q |
144 |
cgaggtggcttaacaaatgccgaggtaattatcaaactgtcagagacaagatcttgagtttcaaactccgcattgcagaatgtataaataaagtataact |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
8295095 |
cgaggtggcttaacaaatgccgaggtaattatcaaactgtcagagacaagatcttgagtttcaaactccgcattgcagaacgtataaatgaagtataact |
8294996 |
T |
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| Q |
244 |
ttctcaacgcttcatct |
260 |
Q |
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|||||||||||||||| |
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| T |
8294995 |
ctctcaacgcttcatct |
8294979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 162
Target Start/End: Original strand, 25740582 - 25740696
Alignment:
| Q |
48 |
ttactaacaaaaactaccctatcttccagcttcacattcttccactcaatatgatccttgtttgtgaccagtttgaacaattcaaagccagtaacccgag |
147 |
Q |
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| T |
25740582 |
ttactaacaaaagccactttatcttccagcttcacattctgccacccaataggactcttatttgtgtccagcttgaacacttcaaagctggtaagcttag |
25740681 |
T |
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| Q |
148 |
gtggcttaacaaatg |
162 |
Q |
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| T |
25740682 |
gtggcttaacaaatg |
25740696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 162
Target Start/End: Original strand, 25732879 - 25732995
Alignment:
| Q |
46 |
agttactaacaaaaactaccctatcttccagcttcacattcttccactcaatatgatccttgtttgtgaccagtttgaacaattcaaagccagtaacccg |
145 |
Q |
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| T |
25732879 |
agttactaacaaaagccactttatcttccagcttcacattctgccacccaataggactcttattcgtgtccagcttgaacacttcaaagctggtaagctt |
25732978 |
T |
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| Q |
146 |
aggtggcttaacaaatg |
162 |
Q |
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| T |
25732979 |
aggtggcttaacaaatg |
25732995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 207
Target Start/End: Original strand, 25763270 - 25763429
Alignment:
| Q |
48 |
ttactaacaaaaactaccctatcttccagcttcacattcttccactcaatatgatccttgtttgtgaccagtttgaacaattcaaagccagtaacccgag |
147 |
Q |
| |
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||||||| |||| | || |||||||| ||||||||||||| |||| ||||| || |||||||| | |||| ||||||| |||||||| |||||| ||| |
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| T |
25763270 |
ttactaagaaaagccactctatcttcgagcttcacattctgccacccaataggactcttgtttgcgtccagcttgaacacttcaaagctggtaacctgag |
25763369 |
T |
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| Q |
148 |
gtggcttaacaaatgccgaggtaattatcaaactgtcagagacaagatcttgagtttcaa |
207 |
Q |
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||||||| |||||| ||| | | | | |||| |||||||||| | | ||||||||||| |
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| T |
25763370 |
gtggctttgaaaatgctgagatgactttgaaacggtcagagacatgttgttgagtttcaa |
25763429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 25746761 - 25746837
Alignment:
| Q |
48 |
ttactaacaaaaactaccctatcttccagcttcacattcttccactcaatatgatccttgtttgtgaccagtttgaa |
124 |
Q |
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|||||||||||| | || ||||||||||| |||||||||||||| ||||| || |||||| ||| |||| ||||| |
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| T |
25746761 |
ttactaacaaaagccactttatcttccagcgtcacattcttccacccaataggactcttgttcgtgtccagcttgaa |
25746837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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