View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0115_high_3 (Length: 361)
Name: NF0115_high_3
Description: NF0115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0115_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 20 - 332
Target Start/End: Original strand, 3294071 - 3294383
Alignment:
| Q |
20 |
agcagagagaccaaaatcggagactttaagattctcgttttcatcgagtaataaattctccggttttaaatcacgatgagaaacacctctactatgacaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
3294071 |
agcagagagaccaaaatcggagactttaagattctcgttttcatcgagtaataaattctccggttttaaatcacgatgagaaacacctctactatggcaa |
3294170 |
T |
|
| Q |
120 |
taatctacagcacttataagctgttggaagtactttcttgcaagttcttccttaaatttaccttttgctaccttctcgaataattcgccaccacgtgcat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3294171 |
taatctacagcacttataagctgttggaagtactttcttgcaagttcttccttaaatttaccttttgctaccttctcgaataattcgccgccacgtgcat |
3294270 |
T |
|
| Q |
220 |
attccatgacaaacaagattttagtttttgttgccatgacttctttaaggttgacgatgtttggatgttttactaacctcatgacagaaatttcacgttt |
319 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3294271 |
attccatgacaaacaggattttggtttttgttgccatgacttctttaaggttaacgatgtttggatgttttactaacctcatgacagaaatttcacgttt |
3294370 |
T |
|
| Q |
320 |
gatttgttccatc |
332 |
Q |
| |
|
||||||||||||| |
|
|
| T |
3294371 |
gatttgttccatc |
3294383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 193
Target Start/End: Original strand, 880912 - 881081
Alignment:
| Q |
24 |
gagagaccaaaatcggagactttaagattctcgttttcatcgagtaataaattctccggttttaaatcacgatgagaaacacctctactatgacaataat |
123 |
Q |
| |
|
||||| |||||||||||||| || || | ||||||||||| | | || ||| || ||||| ||||| ||||| | ||||| | |||||| ||| ||| |
|
|
| T |
880912 |
gagagtccaaaatcggagaccttgaggtcttcgttttcatccaagagtagattttctggtttcaaatcgcgatgtgtgacaccacgactatggcaaaaat |
881011 |
T |
|
| Q |
124 |
ctacagcacttataagctgttggaagtactttcttgcaagttcttccttaaatttaccttttgctacctt |
193 |
Q |
| |
|
| |||||||| || || ||||| ||||||||||| |||| ||||| || ||||| |||||||||||||| |
|
|
| T |
881012 |
caacagcactaatgagttgttgaaagtactttctagcaacatcttcattcaattttccttttgctacctt |
881081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 9995094 - 9995146
Alignment:
| Q |
81 |
ggttttaaatcacgatgagaaacacctctactatgacaataatctacagcact |
133 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||| ||||| |||||||| |
|
|
| T |
9995094 |
ggtttcaaatcacgatgacaaacacctctactatgacagtaatcaacagcact |
9995146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 22370052 - 22370112
Alignment:
| Q |
100 |
aaacacctctactatgacaataatctacagcacttataagctgttggaagtactttcttgc |
160 |
Q |
| |
|
||||||||||||| ||||| ||||| ||||||| ||||||||| || || || |||||||| |
|
|
| T |
22370052 |
aaacacctctactgtgacagtaatccacagcacatataagctgctgaaaatattttcttgc |
22370112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1729 times since January 2019
Visitors: 1426