View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0115_low_1 (Length: 587)
Name: NF0115_low_1
Description: NF0115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0115_low_1 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 145 - 587
Target Start/End: Complemental strand, 2768948 - 2768503
Alignment:
| Q |
145 |
gcagaatcaggaaatgggttggcgagtgaagagnnnnnnntcttacttgaacggtacggttatgatgttgatgctgatgactactttcctcaatcttctt |
244 |
Q |
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| T |
2768948 |
gcagaatcaggaaatgggttggcgagtgaagagaaaaaaatcttacttgaacggtatggttatgatgttgatgctgatgactactttcctcaatcttctt |
2768849 |
T |
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| Q |
245 |
ctccaaaggnnnnnnnnnnnnnnn--cctctttgtgtttttatatgattgtaaatttctgtaatactgtaaattacaacttttataagggttgtttgaat |
342 |
Q |
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| T |
2768848 |
ctccaaaggtttttcattttttttttcctctttgtgtttttatatgattgtaaatttctgtaatactgtaaattacaacttttataagggttgtttgaat |
2768749 |
T |
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| Q |
343 |
tgcttttctgcttaacttttcaatttgaataagtttatgtt-gttgatttatgaaaaaagtgcttatatgatttaagttgagataaagttattgaaaaat |
441 |
Q |
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| T |
2768748 |
tgcttttctgcttaatttttcaatttgaataagtttatgttagttgatttatgaaaaaagtgcttatatgatttaagttgagataaagttattgaaaaat |
2768649 |
T |
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| Q |
442 |
ttgagatgcagtggcttattttgatttattcaacacgatgttatttaaaaataatgtatatgtaaagatttcttacactgtcataaaatcacacatgatt |
541 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2768648 |
ttgagatgcagtggcttattttgatttatacaacaagatgttatttaaaaatagtgtatatgtaaagatttcttacactgttataaaatcacacatgatt |
2768549 |
T |
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| Q |
542 |
ggttgcgatttgctgactttttgtttcgtgaattttgtcgtgtttt |
587 |
Q |
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| T |
2768548 |
ggttgcgatttgctgactttttgtttcgtgaattttgtcgtgtttt |
2768503 |
T |
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