View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0115_low_2 (Length: 370)
Name: NF0115_low_2
Description: NF0115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0115_low_2 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 30 - 348
Target Start/End: Original strand, 9995356 - 9995675
Alignment:
| Q |
30 |
cataattcatttgttccgaggaaatggacaaaagaatnnnnnnnn-gaataaatggagaattgctctatctaactggtgactggttccattcatctacca |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9995356 |
cataattcatttgttccgaggaaatggacaaaagaataaaaaaaaagaataaatggagaattgctctatctaactggtgactggttccattcatctacca |
9995455 |
T |
|
| Q |
129 |
ccatgaacaagactctttcgcgaatgtaagtagaatatttctttttcgcaatttacatttcaatgaagaactctgactatgatatcaacattctaactca |
228 |
Q |
| |
|
||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9995456 |
ccatgaacaagacgctttcgtgaatgtaagtacaatatttctttttcgcaatttacatttcaatgaagaactctgactatgatatcaacattctaactca |
9995555 |
T |
|
| Q |
229 |
cttaaatgtttaggacatcgacaccaacattatatttgtttcaggcttcagaacgaaactcgtgtacaccgaagaaaatactagattcattcctggacac |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
9995556 |
cttaaatgtttaggacatcgacaccaacattatatttgtttcaggcttcagaacaaaactcgtatacaccgaagaaaatactagattcattcctggacac |
9995655 |
T |
|
| Q |
329 |
ggtgtggcttattgtctctg |
348 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
9995656 |
ggtgtggcttattgtctctg |
9995675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 30 - 348
Target Start/End: Complemental strand, 10359195 - 10358874
Alignment:
| Q |
30 |
cataattcattt-gttccgaggaaatggacaaaagaatnnnnnnnn--gaataaatggagaattgctctatctaactggtgactggttccattcatctac |
126 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
10359195 |
cataattcattttgttccgaggaaatggacaaaagaataaaaaaaaaagaataaatggagaattgctgtatctaactggtgactggttccattcatctac |
10359096 |
T |
|
| Q |
127 |
caccatgaacaagactctttcgcgaatgtaagtagaatatttctttttcgcaatttacatttcaatgaagaactctgactatgatatcaacattctaact |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10359095 |
caccatgaacaagactctttcgcgaatgtaagtacaatatttctttttcgtaatttacatttcaatgaagaactctgactatgatatcaacattctaact |
10358996 |
T |
|
| Q |
227 |
cacttaaatgtttaggacatcgacaccaacattatatttgtttcaggcttcagaacgaaactcgtgtacaccgaagaaaatactagattcattcctggac |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10358995 |
cacttaaatgtttaggacatcgacaccaacattatatttgtttcaggcttcagaacgaaactcgtgtacaccgaagaaaatactagattcattcctggac |
10358896 |
T |
|
| Q |
327 |
acggtgtggcttattgtctctg |
348 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
10358895 |
acggtgtggcttattgtctctg |
10358874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 34 - 348
Target Start/End: Complemental strand, 48388350 - 48388038
Alignment:
| Q |
34 |
attcatttgttccgaggaaatggacaaaagaatnnnnnnnngaataaatggagaattgctctatctaactggtgactggttccattcatctaccaccatg |
133 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
48388350 |
attcattggttctgaggaaatggacaaaagaatcaaagaaagaataaatggagaattgctctatctaactggtgactggttccactcatctaccaccatg |
48388251 |
T |
|
| Q |
134 |
aacaagactctttcgcgaatgtaagtagaatatttctttttcgcaatttacatttcaatgaagaactctgactatgatatcaacattctaactcacttaa |
233 |
Q |
| |
|
|||||||||||||||| | ||||||| ||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||| ||||| | |
|
|
| T |
48388250 |
aacaagactctttcgcaatcgtaagtacaatatttcttttttgcaattcacatttcaatgaagaactctgattatgatatcaacattctcactca----a |
48388155 |
T |
|
| Q |
234 |
atgtttaggacatcgacaccaacattatatttgtttcaggcttcagaacgaaactc--gtgtacaccgaagaaaatactagattcattcctggacacggt |
331 |
Q |
| |
|
|||||| ||| | |||||||| | ||||||||||||||||||||| ||||||| |||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
48388154 |
atgttttggaacttgacaccaaaagcttatttgtttcaggcttcagaatgaaactcatgtgtacactgaagaaaatgctagattcattcctggacacggt |
48388055 |
T |
|
| Q |
332 |
gtggcttattgtctctg |
348 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
48388054 |
gtggcttatcgtctctg |
48388038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 30 - 222
Target Start/End: Original strand, 10216541 - 10216733
Alignment:
| Q |
30 |
cataattcatttgttccgaggaaatggacaaaagaatnnnnnnnngaataaatggagaattgctctatctaactggtgactggttccattcatctaccac |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10216541 |
cataattcatttgttccgaggaaatggacaaaagaataaaaaaaagaataaatggagaattgctctatctaactggtgactggttccattcatctaccac |
10216640 |
T |
|
| Q |
130 |
catgaacaagactctttcgcgaatgtaagtagaatatttctttttcgcaatttacatttcaatgaagaactctgactatgatatcaacattct |
222 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10216641 |
catgaacaatactctttcgcgaatgtaagtacaatatttctttttcgcaatttacatttcaatgaagaactctgactatgatatcaacattct |
10216733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 30 - 222
Target Start/End: Original strand, 10105393 - 10105585
Alignment:
| Q |
30 |
cataattcatttgttccgaggaaatggacaaaagaatnnnnnnnngaataaatggagaattgctctatctaactggtgactggttccattcatctaccac |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10105393 |
cataattcatttgttccgaggaaatggacaaaagaataaaaaaaagaataaatggagaattgctctatctaactggtgactggtttcattcatctaccac |
10105492 |
T |
|
| Q |
130 |
catgaacaagactctttcgcgaatgtaagtagaatatttctttttcgcaatttacatttcaatgaagaactctgactatgatatcaacattct |
222 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10105493 |
catgaacaatactctttcgcgaatgtaagtacaatatttctttttcgcaatttacatttcaatgaagaactctgactatgatatcaacattct |
10105585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 188 - 348
Target Start/End: Original strand, 10131188 - 10131348
Alignment:
| Q |
188 |
tcaatgaagaactctgactatgatatcaacattctaactcacttaaatgtttaggacatcgacaccaacattatatttgtttcaggcttcagaacgaaac |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10131188 |
tcaatgaagaactctgactatgatatcaacattctaactcacttaaatgtttagaacatcgacaccaacattatatttgtttcaggcttcataacgaaac |
10131287 |
T |
|
| Q |
288 |
tcgtgtacaccgaagaaaatactagattcattcctggacacggtgtggcttattgtctctg |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10131288 |
tcgtgtacaccgaagaaaatactagattcattcctggacacggtgtggcttattgtctctg |
10131348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 30 - 222
Target Start/End: Original strand, 10226153 - 10226345
Alignment:
| Q |
30 |
cataattcatttgttccgaggaaatggacaaaagaatnnnnnnnngaataaatggagaattgctctatctaactggtgactggttccattcatctaccac |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10226153 |
cataattcatttgttccgaggaaatggacaaaagaataaaaaaaagaataaatggagaattgctctatctaactggtgactggttccattcatctaccac |
10226252 |
T |
|
| Q |
130 |
catgaacaagactctttcgcgaatgtaagtagaatatttctttttcgcaatttacatttcaatgaagaactctgactatgatatcaacattct |
222 |
Q |
| |
|
||||||||| ||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10226253 |
catgaacaatactctttcgcgaatgtaagtacaacatttctttttcacaatttacatttcaatgaagaactctgactatgatatcaacattct |
10226345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 30 - 222
Target Start/End: Original strand, 10220058 - 10220252
Alignment:
| Q |
30 |
cataattcatttgttccgaggaaatggacaaaagaatnnnnnnnngaataaa-tggagaattgctctatctaactggtgactggttccattcatctacca |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10220058 |
cataattcatttgttccgaggaaatggacaaaagaataaaaaaaataaaaaaatggagaattgctctatctaactggtgactggttccattcatctacca |
10220157 |
T |
|
| Q |
129 |
ccatgaacaagactctttcgcgaatgtaagtagaatatttc-tttttcgcaatttacatttcaatgaagaactctgactatgatatcaacattct |
222 |
Q |
| |
|
|||||||||| |||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10220158 |
ccatgaacaatactctttcgcgaatgtcagtacaatatttcttttttcgcaatttacatttcaatgaagaactctgactatgatatcaacattct |
10220252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 30 - 222
Target Start/End: Original strand, 26796012 - 26796204
Alignment:
| Q |
30 |
cataattcatttgttccgaggaaatggacaaaagaatnnnnnnnngaataaatggagaattgctctatctaactggtgactggttccattcatctaccac |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26796012 |
cataattcatttgttccgaggaaatggacaaaagaataaaaaaaagaataaatggagaattgctctatctaactggtgactggtttcattcatctaccac |
26796111 |
T |
|
| Q |
130 |
catgaacaagactctttcgcgaatgtaagtagaatatttctttttcgcaatttacatttcaatgaagaactctgactatgatatcaacattct |
222 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26796112 |
catgaacaatactctttcgcgaatgtaagtacaatatttctttttcgcaatttacatttcaatgaagaactctgactatgatatcaacattct |
26796204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 30 - 222
Target Start/End: Original strand, 26799529 - 26799722
Alignment:
| Q |
30 |
cataattcatttgttccgaggaaatggacaaaagaatnnnnnnnngaataaa-tggagaattgctctatctaactggtgactggttccattcatctacca |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26799529 |
cataattcatttgttccgaggaaatggacaaaagaataaaaaaaataaaaaaatggagaattgctctatctaactggtgactggttccattcatctacca |
26799628 |
T |
|
| Q |
129 |
ccatgaacaagactctttcgcgaatgtaagtagaatatttctttttcgcaatttacatttcaatgaagaactctgactatgatatcaacattct |
222 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26799629 |
ccatgaacaatactctttcgcgaatgtaagtacaatatttctttttcgcaatttacatttcaatgaagaactctgactatgatatcaacattct |
26799722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 30 - 222
Target Start/End: Original strand, 26807078 - 26807272
Alignment:
| Q |
30 |
cataattcatttgttccgaggaaatggacaaaagaatnnnnnnnngaataaa-tggagaattgctctatctaactggtgactggttccattcatctacca |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26807078 |
cataattcatttgttccgaggaaatggacaaaagaataaaaaaaataaaaaaatggagaattgctctatctaactggtgactggttccattcatctacca |
26807177 |
T |
|
| Q |
129 |
ccatgaacaagactctttcgcgaatgtaagtagaatatttc-tttttcgcaatttacatttcaatgaagaactctgactatgatatcaacattct |
222 |
Q |
| |
|
|||||||||| |||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26807178 |
ccatgaacaatactctttcgcgaatgtcagtacaatatttcttttttcgcaatttacatttcaatgaagaactctgactatgatatcaacattct |
26807272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 3765878 - 3765792
Alignment:
| Q |
49 |
ggaaatggacaaaagaatnnnnnnnngaataaatggagaattgctctatctaactggtgactggttccattcatctaccaccatgaa |
135 |
Q |
| |
|
|||||||||||||||||| ||||||| ||| |||||||||| ||| ||||| ||||||||||||||||||| |||||| |
|
|
| T |
3765878 |
ggaaatggacaaaagaattgaagaaagaataaaaggaaaattgctctacctagatggtgcttggttccattcatctaccatcatgaa |
3765792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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