View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0115_low_8 (Length: 289)

Name: NF0115_low_8
Description: NF0115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0115_low_8
NF0115_low_8
[»] chr7 (3 HSPs)
chr7 (56-282)||(5090626-5090851)
chr7 (62-281)||(7138226-7138448)
chr7 (1-50)||(5093936-5093985)
[»] chr6 (4 HSPs)
chr6 (62-257)||(26442850-26443044)
chr6 (235-281)||(30710605-30710651)
chr6 (238-281)||(17304305-17304349)
chr6 (238-281)||(8064325-8064369)
[»] chr8 (1 HSPs)
chr8 (62-257)||(41880944-41881137)
[»] chr3 (1 HSPs)
chr3 (131-205)||(53223550-53223623)
[»] chr5 (1 HSPs)
chr5 (235-282)||(19577352-19577399)
[»] scaffold0103 (1 HSPs)
scaffold0103 (119-151)||(13102-13134)
[»] chr1 (1 HSPs)
chr1 (113-145)||(42826722-42826754)


Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 56 - 282
Target Start/End: Complemental strand, 5090851 - 5090626
Alignment:
Q  56 ataaggatgtgtgtttgttgttatgggcttgggtttcatatttgcatatgttattcaatattactcttctcacttttaaaattgctcatttacacccaaa 155  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  5090851 ataaggatgtttgtttgttgttatgggcttgggcttcatatttgcatatgttattcaatattacccttctcacttttaaaattgctcatttacccccaaa 5090752  T
Q  156 aatttaccctaataacccaaatgcaagttaattgtcgctcgctataaacggcagctaactcgcgctcggttcctatgcttacgttttatttaattatttg 255  Q
    | |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5090751 a-tttaccctaataacccaaatgcaagttaattgtcgctcgctacaaacggaagctaactcgcgctcggttcctatgcttacgttttatttgattatttg 5090653  T
Q  256 acataaaattgtgcctcaccgatattg 282  Q
    |||||||||||||||||||| ||||||    
T  5090652 acataaaattgtgcctcaccaatattg 5090626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 62 - 281
Target Start/End: Complemental strand, 7138448 - 7138226
Alignment:
Q  62 atgtgtgtttgttgttatgggcttgggtttcatatttgcatatgttattcaatattactcttctcacttttaaaattgctcatttacacccaaaaattta 161  Q
    |||||||||||||||||||||||||||  | |||||||||||||||||| || |||| |||||||||||||||||||||||||||||| || ||||||||    
T  7138448 atgtgtgtttgttgttatgggcttgggccttatatttgcatatgttatttaaaattaatcttctcacttttaaaattgctcatttaca-cctaaaattta 7138350  T
Q  162 ccctaataacccaaatgcaagttaattgtcgctcgctataaacggcagctaactcgcgctcggttcctatgcttacgttttatttaattatttgac---- 257  Q
     ||||||||||| ||||||||||||||||| ||||||| ||| ||||  ||||||  ||||||| | ||||  |||||||||||||||||||||||        
T  7138349 tcctaataaccccaatgcaagttaattgtcactcgctacaaatggcaattaactcaagctcggtacttatgtgtacgttttatttaattatttgaccgcg 7138250  T
Q  258 ataaaattgtgcctcaccgatatt 281  Q
    | |||||||||||||||| |||||    
T  7138249 aaaaaattgtgcctcaccaatatt 7138226  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 5093985 - 5093936
Alignment:
Q  1 gttttggaattagggttgcgttgttagcaaaaattaaatattaaggataa 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5093985 gttttggaattagggttgcgttgttagcaaaaattaaatattaaggataa 5093936  T

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Target: chr6 (Bit Score: 104; Significance: 7e-52; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 62 - 257
Target Start/End: Original strand, 26442850 - 26443044
Alignment:
Q  62 atgtgtgtttgttgttatgggcttgggtttcatatttgcatatgttattcaatattactcttctcacttttaaaattgctcatttacacccaaaaattta 161  Q
    |||||||||||||||| ||||||||||  | |||||||||||||||||| || |||| |||||||||||||||||||||||||||||| |||||||||||    
T  26442850 atgtgtgtttgttgttgtgggcttgggccttatatttgcatatgttatttaaaattaatcttctcacttttaaaattgctcatttaca-ccaaaaattta 26442948  T
Q  162 ccctaataacccaaatgcaagttaattgtcgctcgctataaacggcagctaactcgcgctcggttcctatgcttacgttttatttaattatttgac 257  Q
     ||||||||||| ||||||| ||||||||| ||||||| ||| | ||  |||||| |||||||| | ||||  |||||||||||||||||||||||    
T  26442949 tcctaataaccccaatgcaaattaattgtcactcgctacaaatgacaattaactcacgctcggtacttatgtgtacgttttatttaattatttgac 26443044  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 30710651 - 30710605
Alignment:
Q  235 tacgttttatttaattatttgacataaaattgtgcctcaccgatatt 281  Q
    ||||||||||||||||||||||||  ||||| |||||||||||||||    
T  30710651 tacgttttatttaattatttgacaagaaattatgcctcaccgatatt 30710605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 281
Target Start/End: Complemental strand, 17304349 - 17304305
Alignment:
Q  238 gttttatttaattatttgacataaa-attgtgcctcaccgatatt 281  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||    
T  17304349 gttttatttaattatttgacaaaaacattgtgcctcaccgatatt 17304305  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 281
Target Start/End: Complemental strand, 8064369 - 8064325
Alignment:
Q  238 gttttatttaattatttgacataaaa-ttgtgcctcaccgatatt 281  Q
    ||||||||||||||||||||| |||| |||||||||| |||||||    
T  8064369 gttttatttaattatttgacaaaaaatttgtgcctcatcgatatt 8064325  T

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Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 62 - 257
Target Start/End: Complemental strand, 41881137 - 41880944
Alignment:
Q  62 atgtgtgtttgttgttatgggcttgggtttcatatttgcatatgttattcaatattactcttctcacttttaaaattgctcatttacacccaaaaattta 161  Q
    ||||||||||||||||||||||||||  || |||| |||| |||||||| || |||| ||||||||||||||||||||||||||||||||||||| ||||    
T  41881137 atgtgtgtttgttgttatgggcttggcctt-atatctgcacatgttatttaaaattaatcttctcacttttaaaattgctcatttacacccaaaa-ttta 41881040  T
Q  162 ccctaataacccaaatgcaagttaattgtcgctcgctataaacggcagctaactcgcgctcggttcctatgcttacgttttatttaattatttgac 257  Q
     ||||||||||| |||||||||||||| || ||||||| ||| ||||  |||||| |||||||| | ||||  ||  |||||||||||||||||||    
T  41881039 tcctaataaccccaatgcaagttaattatcactcgctacaaatggcaattaactcacgctcggtacttatgtgtatattttatttaattatttgac 41880944  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 53223550 - 53223623
Alignment:
Q  131 ttaaaattgctcatttacacccaaaaatttaccctaataacccaaatgcaagttaattgtcgctcgctataaacg 205  Q
    ||||||||| ||||||||||| ||||||||||||||||||||| | ||||||||||| |||||||||||||||||    
T  53223550 ttaaaattgatcatttacacc-aaaaatttaccctaataaccctagtgcaagttaatcgtcgctcgctataaacg 53223623  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 19577352 - 19577399
Alignment:
Q  235 tacgttttatttaattatttgacataaaattgtgcctcaccgatattg 282  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||    
T  19577352 tacgttttatttaattatttgacaaaaaattatgcctcaccgatattg 19577399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 151
Target Start/End: Original strand, 13102 - 13134
Alignment:
Q  119 ctcttctcacttttaaaattgctcatttacacc 151  Q
    ||||||||||||||||||||||| |||||||||    
T  13102 ctcttctcacttttaaaattgcttatttacacc 13134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 145
Target Start/End: Complemental strand, 42826754 - 42826722
Alignment:
Q  113 atattactcttctcacttttaaaattgctcatt 145  Q
    |||||||||||||||||| ||||||||||||||    
T  42826754 atattactcttctcacttataaaattgctcatt 42826722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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