View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0115_low_9 (Length: 283)
Name: NF0115_low_9
Description: NF0115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0115_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 51 - 272
Target Start/End: Original strand, 2688308 - 2688529
Alignment:
| Q |
51 |
catgaaactactagcatcagttccagctgctcttcagcaaatttctggattggctattgcatattgctactttatcttgtaagtttctttagataatcat |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2688308 |
catgaaactactagcatcagttccagctgctcttcagcaaatttctggattggctattgcatattgctactttatcttgtaagtttctttagataatcat |
2688407 |
T |
|
| Q |
151 |
agttgaaaaggtacctaattttgttcatttgtatcctttgtcatgccttactgttctagaattttaattcacaaatacattattgtttactacatttatt |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2688408 |
agttgaaaaggtacctaattttgttcatttgtatcctttgtcatgccttactgttctagaattttaattcacaaatacattattgtttactacatttatt |
2688507 |
T |
|
| Q |
251 |
ctagagtgttaattcatctcat |
272 |
Q |
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||||||||||||||||||||| |
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| T |
2688508 |
atagagtgttaattcatctcat |
2688529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 163 - 270
Target Start/End: Complemental strand, 367639 - 367532
Alignment:
| Q |
163 |
acctaattttgttcatttgtatcctttgtcatgccttactgttctagaattttaattcacaaatacattattgtttactacatttattctagagtgttaa |
262 |
Q |
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|||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
367639 |
acctaattttgttcatttatatcctttgtcatgcattacttttctagaattttaattcacaaatacattattgtttactacatttattctagagtgttaa |
367540 |
T |
|
| Q |
263 |
ttcatctc |
270 |
Q |
| |
|
|||||||| |
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|
| T |
367539 |
ttcatctc |
367532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 164
Target Start/End: Complemental strand, 38187269 - 38187239
Alignment:
| Q |
134 |
tttctttagataatcatagttgaaaaggtac |
164 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
38187269 |
tttctttagataatcatagttgaaaaggtac |
38187239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 164
Target Start/End: Original strand, 38211088 - 38211118
Alignment:
| Q |
134 |
tttctttagataatcatagttgaaaaggtac |
164 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
38211088 |
tttctttagataatcatagttgaaaaggtac |
38211118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 163 - 266
Target Start/End: Original strand, 6738643 - 6738746
Alignment:
| Q |
163 |
acctaattttgttcatttgtatcctttgtcatgccttactgttctagaattttaattcacaaatacattattgtttactacatttattctagagtgttaa |
262 |
Q |
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|||||| ||||||||||| | |||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||| || ||||| |
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| T |
6738643 |
acctaaatttgttcatttatgtcctttgtcatgccttgttgttctagaattttaattcaagtatacattattgtttagtacatttattctaaagggttaa |
6738742 |
T |
|
| Q |
263 |
ttca |
266 |
Q |
| |
|
|||| |
|
|
| T |
6738743 |
ttca |
6738746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 86
Target Start/End: Original strand, 1704008 - 1704043
Alignment:
| Q |
51 |
catgaaactactagcatcagttccagctgctcttca |
86 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| |
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|
| T |
1704008 |
catgcaactactagcatcagttccagctgctcttca |
1704043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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