View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0116-INSERTION-1 (Length: 541)
Name: NF0116-INSERTION-1
Description: NF0116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0116-INSERTION-1 |
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Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 53615279 - 53615708
Alignment:
| Q |
1 |
gtattgacacatgtaaaaggtgtaaggtttcaaaacttgtttttctaaacaaagaaaaatgcaggattggtttaacttaccttgagatcgcggtgataaa |
100 |
Q |
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| T |
53615279 |
gtattgacacatgtaaaaggtgtaaggtttcaaaacttgtttttctaaacaaagaaaaatgcaggattggtttaacttaccttgagatcgcggtgataaa |
53615378 |
T |
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| Q |
101 |
ctcccttgttatggcagtagtcgacggcgtcaataagttgttggaatagttttcttgcctcacattcattcaacttgttgcaataggactgcataaacaa |
200 |
Q |
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| T |
53615379 |
ctcccttgttatggcagtagtcgacggcgtcaataagttgttggaatagttttcttgcctcacattcattcaacttgttgcaataggactgcataaacaa |
53615478 |
T |
|
| Q |
201 |
aattttcagaattgaagtattataattgcaagtacacaacatttgaacaacaaagagattgttgatatgattctcactattttgtccaatagttgacctc |
300 |
Q |
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| T |
53615479 |
aattttcagaattgaagtattataattgtaagtacacaacatttgaacaacaaagagattgttgatatgattctcactattttgtccaatagttgacctc |
53615578 |
T |
|
| Q |
301 |
ctgatacatattccatcacaatgtatatttttgtttttgtgccaataacctgttttatgatgaaattcattcaaaaattaatactagtgagtgagaaagg |
400 |
Q |
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| T |
53615579 |
ctgatacatattccatcacaatgtatatttttgtttttgtgccaataacctgttttatgatgaaattcattcaaaaattaatactagtgagtgagaaagg |
53615678 |
T |
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| Q |
401 |
gattgtgaatcttcaagactcacaagaatt |
430 |
Q |
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| T |
53615679 |
gattgtgaatcttcaagactcacaagaatt |
53615708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 427 - 541
Target Start/End: Original strand, 53615168 - 53615282
Alignment:
| Q |
427 |
aattgaactcgtgattagtttgaaacaaatttttaaccttattcagtgcacttaatccaaaatcagacacttttagatttcccttgctgtctaggagcaa |
526 |
Q |
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||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53615168 |
aattgaacttgtgattaggttgaaacaaattttttaccttattcagtgcacttaatccaaaatcagacacttttagatttcccttgctgtctaggagcaa |
53615267 |
T |
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| Q |
527 |
gttttctggctgtat |
541 |
Q |
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| T |
53615268 |
gttttctggctgtat |
53615282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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