View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0116-INSERTION-10 (Length: 195)
Name: NF0116-INSERTION-10
Description: NF0116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0116-INSERTION-10 |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 503498 - 503304
Alignment:
| Q |
1 |
cgaatacccaactgatttattaaatttttataacgtattttatttttctttgacaaataagacagtagtcgttgccgttttcctagaattatatgtaaac |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
503498 |
cgaatacccaactgatttattaattttttataacgtattttatttttctttgacaaataagacagtagtcgttgccgttttcctagaattatatgtaaac |
503399 |
T |
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| Q |
101 |
ccctttgagataaatagtcttttgggtgtaattccaaatgtgaagtaagtcttagtatcttattgtggaaattgaatacttgaaattcaactgat |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
503398 |
ccctttgagataaatagtcttttgggtgtaattccaaatgtgaagtaagtcttagtatcttattatggaaattgaatacttgaaattcaactgat |
503304 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 183; Significance: 3e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 6928252 - 6928058
Alignment:
| Q |
1 |
cgaatacccaactgatttattaaatttttataacgtattttatttttctttgacaaataagacagtagtcgttgccgttttcctagaattatatgtaaac |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6928252 |
cgaatacccaactgatttattaattttttataacgtattttatttttctttgacaaataagacagtagtcgttgccgttttcctagaattatatgtaaac |
6928153 |
T |
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| Q |
101 |
ccctttgagataaatagtcttttgggtgtaattccaaatgtgaagtaagtcttagtatcttattgtggaaattgaatacttgaaattcaactgat |
195 |
Q |
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| T |
6928152 |
ccctttgagataaatagtcctttgggtgtaattccaaatgtgaagtaagtcttagtatcttattatggaaattgaatacttgaaattcaactgat |
6928058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 183; Significance: 3e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 14539995 - 14539801
Alignment:
| Q |
1 |
cgaatacccaactgatttattaaatttttataacgtattttatttttctttgacaaataagacagtagtcgttgccgttttcctagaattatatgtaaac |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14539995 |
cgaatacccaactgatttattaattttttataacgtattttatttttctttgacaaataagacagtagtcgttgccgttttcctataattatatgtaaac |
14539896 |
T |
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| Q |
101 |
ccctttgagataaatagtcttttgggtgtaattccaaatgtgaagtaagtcttagtatcttattgtggaaattgaatacttgaaattcaactgat |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
14539895 |
ccctttgagataaatagtcttttgggtgtaattccaaatgtgaagtaagtcttagtatcttattatggaaattgaatacttgaaattcaactgat |
14539801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 2 - 195
Target Start/End: Original strand, 20373917 - 20374110
Alignment:
| Q |
2 |
gaatacccaactgatttattaaatttttataacgtattttatttttctttgacaaataagacagtagtcgttgccgttttcctagaattatatgtaaacc |
101 |
Q |
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|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
20373917 |
gaatacccaactgatttattaattttttataatgtattttatttttctttgacaaataagacagtagtcgttgccatttttctagaattatatgtaaact |
20374016 |
T |
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| Q |
102 |
cctttgagataaatagtcttttgggtgtaattccaaatgtgaagtaagtcttagtatcttattgtggaaattgaatacttgaaattcaactgat |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
20374017 |
cctttgagataaatagtcttttgggtgtaattccaaatgtgaagtaagtcttagtatcttattatggaaattgaatacttgaaattcaactgat |
20374110 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 25 - 195
Target Start/End: Complemental strand, 6959046 - 6958876
Alignment:
| Q |
25 |
tttttataacgtattttatttttctttgacaaataagacagtagtcgttgccgttttcctagaattatatgtaaacccctttgagataaatagtcttttg |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6959046 |
tttttataacgtattttatttttctttgacaaataagacagtagtcgttgccgttttcctagaattatatgtaaacccctttgagataaatagtcttttg |
6958947 |
T |
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| Q |
125 |
ggtgtaattccaaatgtgaagtaagtcttagtatcttattgtggaaattgaatacttgaaattcaactgat |
195 |
Q |
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||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
6958946 |
ggtgtaattccaaatgtgaagtaagtcttagtaccttattatggaaattgaatacttgaaattcaactgat |
6958876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 3 - 195
Target Start/End: Original strand, 22838380 - 22838571
Alignment:
| Q |
3 |
aatacccaactgatttattaaatttttataacgtattttatttttctttgacaaataagacagtagtcgttgccgttttcctagaattatatgtaaaccc |
102 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||| |
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| T |
22838380 |
aatacccaactgatttattaattttttataacgtattttatttttctttgacaaataagatagtagtcgttgttattttcctaaaattatatgtaaaccc |
22838479 |
T |
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| Q |
103 |
ctttgagataaatagtcttttgggtgtaattccaaatgtgaagtaagtcttagtatcttattgtggaaattgaatacttgaaattcaactgat |
195 |
Q |
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|||| | || ||||||||| ||||||||||||||||||||||||||||||||||| |||| | || ||||||||||||||||||||||||||| |
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| T |
22838480 |
ctttcatat-aatagtcttgtgggtgtaattccaaatgtgaagtaagtcttagtaccttactatgaaaattgaatacttgaaattcaactgat |
22838571 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 45; Significance: 7e-17; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 179163 - 179335
Alignment:
| Q |
19 |
attaaatttttataacgtattttatttttctttgacaaataagacagtagtcgttgccgttttcctagaattatatgtaaacccctttgagataaatagt |
118 |
Q |
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||||| || |||||||||| | |||||||||||| |||||||| ||| | ||| | |||||||| | || | | ||| ||| |||| ||| || | | |
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| T |
179163 |
attaatttcttataacgtactctatttttctttgccaaataagccagcaaacgtcgacgttttcccaaaagtcttcgtagacctctttccgatgaaaaat |
179262 |
T |
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| Q |
119 |
cttttgggtgtaattccaaatgtgaagtaagtcttagtatcttattgtggaaattgaatacttgaaattcaac |
191 |
Q |
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||||| |||||||||||||||||||| |||||| ||||||||||| |||| ||||||||||||||||||| |
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| T |
179263 |
cttttttgtgtaattccaaatgtgaagcaagtctccgtatcttattggtgaaactgaatacttgaaattcaac |
179335 |
T |
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