View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0116-INSERTION-11 (Length: 594)
Name: NF0116-INSERTION-11
Description: NF0116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0116-INSERTION-11 |
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Alignment Details
Target: chr3 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 1 - 591
Target Start/End: Complemental strand, 41257767 - 41257187
Alignment:
| Q |
1 |
tggcaagtttagtcttggacttagaggtggttttcttggacttagtggtgaaggtcttggacttggaactaatcttggacttagtacttcactgtatact |
100 |
Q |
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| T |
41257767 |
tggcaagtttagtcttggacttagaggtggttttcttggacttagtggtgaaggtcttggacttggaactaatcttggacttagtacttcactgtatact |
41257668 |
T |
|
| Q |
101 |
tttctttgtttcttggcttcaagggcttggagtagttgttgcaactctgtgatgtaatcaactacacctccaattattgatgcttgatctccctagttaa |
200 |
Q |
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| T |
41257667 |
tttctttgtttcttggcttcaagggcttggagtagttgttgcaactctgtgatgtaatcaactacacctccaattattgatgcttgatctccctagttaa |
41257568 |
T |
|
| Q |
201 |
attagttgcattagattgagtgcataagggaaatggatttgctgcaatcaaataatgactacttatctaattttaattagtgagttataatactttttat |
300 |
Q |
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| T |
41257567 |
attagttgcattagattgagtgcataagggaaatggatttgctgcaatcaaataatgactacttatctaattttaattagtgagttataatactttttat |
41257468 |
T |
|
| Q |
301 |
ttatttgacaatttaaccatcttcgatgcattgatcacataactacaagattcctatgtagaaaatccgggtctatgcacaaaaagtaatcaaatttata |
400 |
Q |
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| T |
41257467 |
ttatttgacaatttaaccatcttc---------atcacataactacaagattcctatgtagaaaatccgggtctatgcacaaaaagtaatcaaatttata |
41257377 |
T |
|
| Q |
401 |
agtnnnnnnngcaaaatattgatagatcagctttttaagtcacaatagaattgttannnnnnnnnnnnnnnnnnaaaaagagccgcgtgaatgcagaccc |
500 |
Q |
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| T |
41257376 |
agtaaaaaaagcaaaatattgatagatcagctttttaagtcacaatagaattgttatttttttcctgtttttttaaaaagagccgcgtaaatgcagaccc |
41257277 |
T |
|
| Q |
501 |
cactgcaacaaattatgatgcacgctccacatctttagataaaccataagtttgcactccatgtgagtgtagtagaggtcacttgtctagg |
591 |
Q |
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| T |
41257276 |
cactgcaacaaattataatgcacgctccacatc-ttagataaaccataagtttgcactccatgtgagtgtagtagaggtcacttgtctagg |
41257187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 73 - 195
Target Start/End: Original strand, 9630382 - 9630504
Alignment:
| Q |
73 |
tcttggacttagtacttcactgtatacttttctttgtttcttggcttcaagggcttggagtagttgttgcaactctgtgatgtaatcaactacacctcca |
172 |
Q |
| |
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|||||||||| |||||||| |||| ||||||||||||||||||| ||| ||| ||| |||||||| || ||||| |||||||||||| ||||| | || |
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| T |
9630382 |
tcttggacttggtacttcattgtaaacttttctttgtttcttggattctaggcattgtagtagttgatgtaactcgttgatgtaatcaattacactttca |
9630481 |
T |
|
| Q |
173 |
attattgatgcttgatctcccta |
195 |
Q |
| |
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| T |
9630482 |
actattgatgcttgatctcccta |
9630504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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