View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0116-INSERTION-13 (Length: 212)
Name: NF0116-INSERTION-13
Description: NF0116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0116-INSERTION-13 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 1717438 - 1717649
Alignment:
| Q |
1 |
ctgtggccaatggatttgacatgatcacataagtatttgggatgtatttcctcacaacatcataagcttccctgtaatagttcttcaggctatctagatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1717438 |
ctgtggccaatggatttgacatgatcacataagtatttgggatgtatttcctcacaacatcataagcttccctgtaatagttcttcaagctatctagatt |
1717537 |
T |
|
| Q |
101 |
gacacctagtggcttattcatcagctctattcctcctaaactttttctatgactgtatctgtaaacaagttcaattcatgtataaagaaatcagcttcga |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1717538 |
gacacctagtggctcattcatcagctctattcctcctaaactttttctatgactgtatctgtaaacaagttcaattcatgtataaagaaatcagtttcga |
1717637 |
T |
|
| Q |
201 |
gtaggtaattca |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1717638 |
gtaggtaattca |
1717649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 1738935 - 1739146
Alignment:
| Q |
1 |
ctgtggccaatggatttgacatgatcacataagtatttgggatgtatttcctcacaacatcataagcttccctgtaatagttcttcaggctatctagatt |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||| |||| |
|
|
| T |
1738935 |
ctgtggccaatgggtttgacatgatcacataagtatttgggatgtatttcctcacaacatcataagctaacttgtaatagttcttgaggctatcttgatt |
1739034 |
T |
|
| Q |
101 |
gacacctagtggcttattcatcagctctattcctcctaaactttttctatgactgtatctgtaaacaagttcaattcatgtataaagaaatcagcttcga |
200 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
1739035 |
gacaccaagtggctcattcatcagctctattcctcctaaactttttctattattatatctgtaaacaagttcaattcatgtataaagatatcagtttcga |
1739134 |
T |
|
| Q |
201 |
gtaggtaattca |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1739135 |
gtaggtaattca |
1739146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 194
Target Start/End: Original strand, 1754112 - 1754300
Alignment:
| Q |
7 |
ccaatggatttgacatgatcacataagtatttgggatgtatttcctcacaacatcataagcttccctgtaatagttcttcaggctatctagattgacacc |
106 |
Q |
| |
|
||||||| |||||||| |||||||||| |||||| ||||||||||||| |||||||||| ||| ||||||| ||||| |||||||||||||||||||| |
|
|
| T |
1754112 |
ccaatgggtttgacattatcacataagcatttggattgtatttcctcactgcatcataagcctccttgtaatatttcttgaggctatctagattgacacc |
1754211 |
T |
|
| Q |
107 |
tagtggcttattcatcagctctattcctcctaaactttttctatgactgtatctgtaaacaagttcaattcatgtat-aaagaaatcag |
194 |
Q |
| |
|
| |||||| |||||||| ||||||||||||||||||| ||||| || || |||| |||| ||||||||| |||| ||||||||||| |
|
|
| T |
1754212 |
ttgtggctcattcatcaactctattcctcctaaacttggtctattaccatacctgtccacaaattcaattcaagtatcaaagaaatcag |
1754300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 7 - 143
Target Start/End: Original strand, 1748796 - 1748932
Alignment:
| Q |
7 |
ccaatggatttgacatgatcacataagtatttgggatgtatttcctcacaacatcataagcttccctgtaatagttcttcaggctatctagattgacacc |
106 |
Q |
| |
|
||||||||||||||||||||||||||| | |||| ||||||| |||||| ||||||||||| || ||||||| ||||| || ||||| ||||||||||| |
|
|
| T |
1748796 |
ccaatggatttgacatgatcacataagcctctgggttgtattttctcacagcatcataagctgccttgtaatacttcttgagactatcaagattgacacc |
1748895 |
T |
|
| Q |
107 |
tagtggcttattcatcagctctattcctcctaaactt |
143 |
Q |
| |
|
| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
1748896 |
ttgtggctcattcatcagctctattcctcctaaactt |
1748932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1360 times since January 2019
Visitors: 1419