View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0116-INSERTION-2 (Length: 549)

Name: NF0116-INSERTION-2
Description: NF0116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0116-INSERTION-2
NF0116-INSERTION-2
[»] chr5 (16 HSPs)
chr5 (1-549)||(22927655-22928203)
chr5 (43-549)||(23022750-23023255)
chr5 (45-294)||(21263146-21263395)
chr5 (374-542)||(21260204-21260366)
chr5 (118-300)||(21211106-21211288)
chr5 (128-264)||(21249043-21249179)
chr5 (373-541)||(22973327-22973495)
chr5 (415-538)||(21347920-21348043)
chr5 (375-538)||(22932174-22932337)
chr5 (130-300)||(22983981-22984151)
chr5 (375-541)||(21318046-21318212)
chr5 (128-215)||(22932668-22932755)
chr5 (371-437)||(21209348-21209414)
chr5 (152-221)||(21350452-21350521)
chr5 (371-450)||(21248511-21248590)
chr5 (506-541)||(22985644-22985679)
[»] scaffold0009 (5 HSPs)
scaffold0009 (33-324)||(23738-24029)
scaffold0009 (355-546)||(25059-25250)
scaffold0009 (373-541)||(260251-260419)
scaffold0009 (501-541)||(219285-219325)
scaffold0009 (170-304)||(259421-259555)
[»] scaffold0328 (1 HSPs)
scaffold0328 (373-541)||(5233-5401)
[»] chr8 (2 HSPs)
chr8 (371-437)||(26915406-26915472)
chr8 (209-300)||(26915020-26915111)


Alignment Details
Target: chr5 (Bit Score: 483; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 1 - 549
Target Start/End: Complemental strand, 22928203 - 22927655
Alignment:
Q  1 taaatttgcggctaacaaacacaaacaatgttagaaaaataaataaaacctgaatggttgaggaatattcggaaataagcgagtattccttgcgtaagaa 100  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22928203 taaatttgcggccaacaaacacaaacgatgttagaaaaataaataaaacctgaatggttgaggaatattcggaaataagcgcgtattccttgcgtaagaa 22928104  T
Q  101 ggaagagttgtagtgtagaataaatccgcccattctaacttttgattctcggatacaacaaataattgaccaaacccttgcatatcttctggagtttgcc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  22928103 ggaagagttgtagtgtagaataaatccgcccattctaacttttgattctcggatacaacaaacaattgaccaaacccctgcatatcttctggagtttgcc 22928004  T
Q  201 gtaatttcttcttctcttccaccggaagacttaagaactcttgaacacctatcttcacattttccaccaataaaggatcgactccgtgattaatcaactg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22928003 gtaatttcttcttctcttccaccggaagacttaagaactcttgaacccctatcttcacattttccaccaataaatgatcgactccgtgattaatcaactg 22927904  T
Q  301 taatcattttgaattttagaaatcttacaaagttaaaacaattagagtataataaaaggaagaattatagttcaaacctggaagaacccccattctttgc 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||| |    
T  22927903 taatcattttgaattttagaaatcttacaaagttaaaacaattagagtataataaaaggaggagttatagttcaaacctggaagaatccccattctttac 22927804  T
Q  401 atgcttgatcaaggttttctagctcagttgcatcttcagataacaatttatttaggtcaatgactggaacytgttgtaaggaagatgtttttgataaagc 500  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |      
T  22927803 atgcttgatcaaggttttctagctcagttgcatcttctgataacaatttatttaggtcaatgactggaacttgttgtaaggaagatgtatttgatacatt 22927704  T
Q  501 aatagggtcttgatttggttgaagatattgttctggaacttctatgttg 549  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22927703 aatagggtcttgatttggttgaagatattgttctggaacttctatgttg 22927655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 43 - 549
Target Start/End: Original strand, 23022750 - 23023255
Alignment:
Q  43 ataaaacctgaatggttgaggaatattcggaaataagcgagtattccttgcgtaagaaggaagagttgtagtgtagaataaatccgcccattctaacttt 142  Q
    ||||||||||||||||||||||||||| |||||||| || || |||||||| || || |||||||| |||||| |||||||||| |||||||||||||||    
T  23022750 ataaaacctgaatggttgaggaatatttggaaataaccgggtgttccttgcataggatggaagagtcgtagtgaagaataaatctgcccattctaacttt 23022849  T
Q  143 tgattctcggatacaacaaataattgaccaaacccttgcatatcttctggagtttgccgtaatttcttcttctcttccaccggaagacttaagaactctt 242  Q
    |||||||| |||| |||||| | |||||||||||| |  ||||| | | |  ||||||  |||||||||||||||||||  |||||||||| ||||||||    
T  23022850 tgattctcagataaaacaaacagttgaccaaacccctcaatatcgttttggttttgccaaaatttcttcttctcttccaatggaagacttaggaactctt 23022949  T
Q  243 gaacacctatcttcacattttccaccaataaaggatcgactccgtgattaatcaactgtaatcattttgaattttagaaatcttacaaagttaaaacaat 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  23022950 gaacacctatcttcacattttccaccaataaaggatcgactccgtgattaatcaactgtaatcattttgaattttagaaatgttacaaagttaaaataat 23023049  T
Q  343 tagagtataataaaaggaagaattatagttcaaacctggaagaacccccattctttgcatgcttgatcaaggttttctagctcagttgcatcttcagata 442  Q
    ||||||||||| |||||| || |||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||    
T  23023050 tagagtataat-aaaggaggagttatagttcaaacctggaagaacccccattctttacatgcttgatcaagcttctctagctcagttgcatcttcagata 23023148  T
Q  443 acaatttatttaggtcaatgactggaacytgttgtaaggaagatgtttttgataaagcaatagggtcttgatttggttgaagatattgttctggaacttc 542  Q
    ||| |||| |||||||||||||||| || ||||||||||||| ||| ||||||| |  |||||||||||||||||| ||||||||||||||||||| |||    
T  23023149 acagtttacttaggtcaatgactggtacttgttgtaaggaagttgtatttgatacattaatagggtcttgatttggatgaagatattgttctggaatttc 23023248  T
Q  543 tatgttg 549  Q
    | |||||    
T  23023249 tgtgttg 23023255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 45 - 294
Target Start/End: Complemental strand, 21263395 - 21263146
Alignment:
Q  45 aaaacctgaatggttgaggaatattcggaaataagcgagtattccttgcgtaagaaggaagagttgtagtgtagaataaatccgcccattctaacttttg 144  Q
    |||||||||||||||| ||||| || ||||||||||| | ||||||||| || || || ||||||||| || |||||||||| |||||||||||||||||    
T  21263395 aaaacctgaatggttggggaatgtttggaaataagcgggaattccttgcataggatggcagagttgtaatgaagaataaatcagcccattctaacttttg 21263296  T
Q  145 attctcggatacaacaaataattgaccaaacccttgcatatcttctggagtttgccgtaatttcttcttctcttccaccggaagacttaagaactcttga 244  Q
    |||||| ||||||||||| | ||| ||||| || |  ||||| ||||| |||||||  ||||||||||| || || || | |||| ||||||||||||||    
T  21263295 attctcagatacaacaaacagttggccaaatccctcaatatcatctggtgtttgccaaaatttcttcttttcatctacagaaagatttaagaactcttga 21263196  T
Q  245 acacctatcttcacattttccaccaataaaggatcgactccgtgattaat 294  Q
    ||||||||||||||||||||||||||| | |||| |||||| ||||||||    
T  21263195 acacctatcttcacattttccaccaatgagggattgactccatgattaat 21263146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 374 - 542
Target Start/End: Complemental strand, 21260366 - 21260204
Alignment:
Q  374 aaacctggaagaacccccattctttgcatgcttgatcaaggttttctagctcagttgcatcttcagataacaatttatttaggtcaatgactggaacytg 473  Q
    ||||||||||||| ||||||||||| ||||||||||| |  || ||||||||||||||||||||| | | ||||||| |||||||||||||||| ||       
T  21260366 aaacctggaagaaaccccattctttacatgcttgatccaacttctctagctcagttgcatcttcacacaccaatttacttaggtcaatgactgggac--- 21260270  T
Q  474 ttgtaaggaagatgtttttgataaagcaatagggtcttgatttggttgaagatattgttctggaacttc 542  Q
    |||||   ||| ||| ||||||| | ||||||||||||||||||| |||||||||||||||||||||||    
T  21260269 ttgta---aagttgtatttgatacaacaatagggtcttgatttggatgaagatattgttctggaacttc 21260204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 118 - 300
Target Start/End: Complemental strand, 21211288 - 21211106
Alignment:
Q  118 gaataaatccgcccattctaacttttgattctcggatacaacaaataattgaccaaacccttgcatatcttctggagtttgccgtaatttcttcttctct 217  Q
    ||||||||| |||||||| || || |||| ||| ||||||||||| || |||||||| ||||  |||| | ||||  |||||  |||| | |||||||||    
T  21211288 gaataaatctgcccattccaatttgtgatcctctgatacaacaaacaactgaccaaaaccttcgatatttcctggtttttgcgataatattttcttctct 21211189  T
Q  218 tccaccggaagacttaagaactcttgaacacctatcttcacattttccaccaataaaggatcgactccgtgattaatcaactg 300  Q
    |||||||| ||| | ||||| |||||||||  | | || | |||||||||||||||||||| |||||||||||| ||||||||    
T  21211188 tccaccggcagattgaagaagtcttgaacaagttttttaaaattttccaccaataaaggattgactccgtgattgatcaactg 21211106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 128 - 264
Target Start/End: Complemental strand, 21249179 - 21249043
Alignment:
Q  128 gcccattctaacttttgattctcggatacaacaaataattgaccaaacccttgcatatcttctggagtttgccgtaatttcttcttctcttccaccggaa 227  Q
    ||||||||||| |||||||  || || |||||||| |  |||||||| |||| |||||| | |||||||||||  |||||||||||||||||||| || |    
T  21249179 gcccattctaatttttgatcatcagagacaacaaacatctgaccaaatccttccatatcatttggagtttgccaaaatttcttcttctcttccactggta 21249080  T
Q  228 gacttaagaactcttgaacacctatcttcacattttc 264  Q
    | |||||||| |||| || ||||||||| || |||||    
T  21249079 ggcttaagaattctttaatacctatctttaccttttc 21249043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 373 - 541
Target Start/End: Original strand, 22973327 - 22973495
Alignment:
Q  373 caaacctggaagaacccccattctttgcatgcttgatcaaggttttctagctcagttgcatcttcagataacaatttatttaggtcaatgactggaacyt 472  Q
    |||||||| ||||| |||||||| ||||| || || || || || |||| ||||  || ||||||| ||||||||||| | || || || ||||| |  |    
T  22973327 caaacctgaaagaaaccccattccttgcaagcatggtctagcttctctaactcaactgaatcttcacataacaatttactaagatcgataactgggagtt 22973426  T
Q  473 gttgtaaggaagatgtttttgataaagcaatagggtcttgatttggttgaagatattgttctggaactt 541  Q
     | ||||||||| ||| || |||| |  |||||| ||||||||||||||||||||||||||||||||||    
T  22973427 ttggtaaggaagttgtgttagatacaaaaataggatcttgatttggttgaagatattgttctggaactt 22973495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 415 - 538
Target Start/End: Complemental strand, 21348043 - 21347920
Alignment:
Q  415 ttttctagctcagttgcatcttcagataacaatttatttaggtcaatgactggaacytgttgtaaggaagatgtttttgataaagcaatagggtcttgat 514  Q
    |||| ||||||||||||||| ||||| ||||||||||  ||||| || || ||||| ||| |||| ||   ||| || || | |||||||||||||||||    
T  21348043 ttttgtagctcagttgcatcatcagacaacaatttatgcaggtcgataacaggaacttgtggtaaagagcttgtgttagaaacagcaatagggtcttgat 21347944  T
Q  515 ttggttgaagatattgttctggaa 538  Q
    |||| ||||||||| |||||||||    
T  21347943 ttggatgaagatatcgttctggaa 21347920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 375 - 538
Target Start/End: Complemental strand, 22932337 - 22932174
Alignment:
Q  375 aacctggaagaacccccattctttgcatgcttgatcaaggttttctagctcagttgcatcttcagataacaatttatttaggtcaatgactggaacytgt 474  Q
    |||||||||||| |||||||||||||||| ||| || || ||||||||||||| || ||| ||||| ||||||||||  |||||||| |  ||||| |||    
T  22932337 aacctggaagaaaccccattctttgcatgtttggtcgagcttttctagctcagctgaatcatcagacaacaatttatgcaggtcaataataggaacatgt 22932238  T
Q  475 tgtaaggaagatgtttttgataaagcaatagggtcttgatttggttgaagatattgttctggaa 538  Q
     |||| |||| ||| || | || | |||||| ||| |||||||  || | |||| |||||||||    
T  22932237 ggtaaagaagttgtgttagttacaacaatagtgtcctgatttgaatggaaatatcgttctggaa 22932174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 130 - 300
Target Start/End: Original strand, 22983981 - 22984151
Alignment:
Q  130 ccattctaacttttgattctcggatacaacaaataattgaccaaacccttgcatatcttctggagtttgccgtaatttcttcttctcttccaccggaaga 229  Q
    ||||||||||||||| |  || ||||||||||| || |||||||| ||||||||||| | ||| |||||||   ||||||||||||| || |  |||||     
T  22983981 ccattctaacttttgttcatcagatacaacaaacaactgaccaaatccttgcatatcatttggtgtttgccaatatttcttcttctcatcgattggaagg 22984080  T
Q  230 cttaagaactcttgaacacctatcttcacattttccaccaataaaggatcgactccgtgattaatcaactg 300  Q
     | ||||| | || ||||||| ||||||  ||||| ||||||||||  | |||||| || |||||||||||    
T  22984081 ttgaagaattgttcaacacctttcttcatgttttcaaccaataaagtgttgactccatggttaatcaactg 22984151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 541
Target Start/End: Complemental strand, 21318212 - 21318046
Alignment:
Q  375 aacctggaagaacccccattctttgcatgcttgatcaaggttttctagctcagttgcatcttcagataacaatttatttaggtcaatgactggaacytgt 474  Q
    |||||||||||| |||||||| || || || |  || || || ||||||||| || |||||||| |||| |||||||  | |||||| | |||||  |||    
T  21318212 aacctggaagaaaccccattccttacaagcattgtctagcttctctagctcaattccatcttcacataataatttatcgaagtcaataattggaagttgt 21318113  T
Q  475 tgtaaggaagatgtttttgataaagcaatagggtcttgatttggttgaagatattgttctggaactt 541  Q
     || | || | ||| || |||| |  ||||| ||||||||||||||||||||||||||| |||||||    
T  21318112 ggtgaagatgttgtgttagatacaagaatagagtcttgatttggttgaagatattgttcgggaactt 21318046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 128 - 215
Target Start/End: Complemental strand, 22932755 - 22932668
Alignment:
Q  128 gcccattctaacttttgattctcggatacaacaaataattgaccaaacccttgcatatcttctggagtttgccgtaatttcttcttct 215  Q
    |||||||||| |||||| | ||| ||||||||||| || |||||||| ||||| ||||| | ||| |||||||  |||||||||||||    
T  22932755 gcccattctagcttttgttcctcagatacaacaaacaactgaccaaatccttgtatatcatttggtgtttgccaaaatttcttcttct 22932668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 437
Target Start/End: Complemental strand, 21209414 - 21209348
Alignment:
Q  371 ttcaaacctggaagaacccccattctttgcatgcttgatcaaggttttctagctcagttgcatcttc 437  Q
    |||||||||| ||||| |||||||||||||| || |||||||| |||| ||| |||||| |||||||    
T  21209414 ttcaaacctgaaagaaaccccattctttgcaagcatgatcaagcttttgtagttcagtttcatcttc 21209348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 21350521 - 21350452
Alignment:
Q  152 gatacaacaaataattgaccaaacccttgcatatcttctggagtttgccgtaatttcttcttctcttcca 221  Q
    ||||||||||| || ||||||||||| |||| ||| | ||| |||||||  |||||||||||||||||||    
T  21350521 gatacaacaaacaactgaccaaacccctgcacatcatttggtgtttgccaaaatttcttcttctcttcca 21350452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 450
Target Start/End: Complemental strand, 21248590 - 21248511
Alignment:
Q  371 ttcaaacctggaagaacccccattctttgcatgcttgatcaaggttttctagctcagttgcatcttcagataacaattta 450  Q
    ||||||||||||| || ||||||||||| || ||  | || || || |||||||||||||||||||||  ||||||||||    
T  21248590 ttcaaacctggaaaaaaccccattctttacaagcaaggtctagcttctctagctcagttgcatcttcacctaacaattta 21248511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 506 - 541
Target Start/End: Original strand, 22985644 - 22985679
Alignment:
Q  506 ggtcttgatttggttgaagatattgttctggaactt 541  Q
    |||||||||| |||||||||||||||||||||||||    
T  22985644 ggtcttgattcggttgaagatattgttctggaactt 22985679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 152; Significance: 2e-80; HSPs: 5)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 33 - 324
Target Start/End: Original strand, 23738 - 24029
Alignment:
Q  33 agaaaaataaataaaacctgaatggttgaggaatattcggaaataagcgagtattccttgcgtaagaaggaagagttgtagtgtagaataaatccgccca 132  Q
    ||||||| | |||||||||||||||||||||||||||||||||||| |||| ||||||||| || || |||||||| |||||| |||||||||| |||||    
T  23738 agaaaaagatataaaacctgaatggttgaggaatattcggaaataaccgaggattccttgcataggacggaagagtagtagtgaagaataaatctgccca 23837  T
Q  133 ttctaacttttgattctcggatacaacaaataattgaccaaacccttgcatatcttctggagtttgccgtaatttcttcttctcttccaccggaagactt 232  Q
    ||| ||||||||||| || ||||||||||| |||||||||||||| |  |||||||| ||||||||||  | |||||||||||||||||||||| ||||     
T  23838 ttccaacttttgattttccgatacaacaaacaattgaccaaacccctctatatcttccggagtttgccaaagtttcttcttctcttccaccggacgactc 23937  T
Q  233 aagaactcttgaacacctatcttcacattttccaccaataaaggatcgactccgtgattaatcaactgtaatcattttgaattttagaaatc 324  Q
    | ||| ||||||||||||||||||| ||||||||||||| |||||  |||||| ||||| |||| || |||||| ||| |||||||||||||    
T  23938 atgaattcttgaacacctatcttcaaattttccaccaatgaaggactgactccatgattgatcagctataatcaatttcaattttagaaatc 24029  T

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Target: scaffold0009; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 355 - 546
Target Start/End: Original strand, 25059 - 25250
Alignment:
Q  355 aaaggaagaattatagttcaaacctggaagaacccccattctttgcatgcttgatcaaggttttctagctcagttgcatcttcagataacaatttattta 454  Q
    ||||||||| |  ||||| ||||||| ||||| ||||||| ||| ||||||||||| |  || | |||||||| |||||||||| | ||||||||| |||    
T  25059 aaaggaagagtattagttaaaacctgaaagaatccccattgtttacatgcttgatccaacttctgtagctcagatgcatcttcacacaacaatttactta 25158  T
Q  455 ggtcaatgactggaacytgttgtaaggaagatgtttttgataaagcaatagggtcttgatttggttgaagatattgttctggaacttctatg 546  Q
    ||||||||||||| || |||||||  |||||||| ||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||    
T  25159 ggtcaatgactgggacttgttgtagtgaagatgtatttgataaaacaatagggtcttgatttggataaagatattgttctggaacttctatg 25250  T

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Target: scaffold0009; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 373 - 541
Target Start/End: Original strand, 260251 - 260419
Alignment:
Q  373 caaacctggaagaacccccattctttgcatgcttgatcaaggttttctagctcagttgcatcttcagataacaatttatttaggtcaatgactggaacyt 472  Q
    |||||||||||||| ||||| || || || || || || || || ||||||||| ||||||||||| |||||| |||| | ||||| || ||||| |  |    
T  260251 caaacctggaagaaaccccaatccttacaagcatggtctagattctctagctcaattgcatcttcacataacagtttactaaggtcgataactgggagtt 260350  T
Q  473 gttgtaaggaagatgtttttgataaagcaatagggtcttgatttggttgaagatattgttctggaactt 541  Q
    |  |||| || | ||| || |||| |  ||||| |||||||||||||||||||||||||| ||||||||    
T  260351 gcggtaacgatgttgtgttagatacaagaatagagtcttgatttggttgaagatattgttttggaactt 260419  T

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Target: scaffold0009; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 501 - 541
Target Start/End: Original strand, 219285 - 219325
Alignment:
Q  501 aatagggtcttgatttggttgaagatattgttctggaactt 541  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  219285 aatagagtcttgatttggttgaagatattgttctggaactt 219325  T

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Target: scaffold0009; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 304
Target Start/End: Original strand, 259421 - 259555
Alignment:
Q  170 ccaaacccttgcatatcttctggagtttgccgtaatttcttcttctcttccaccggaagacttaagaactcttgaacacctatcttcacattttccacca 269  Q
    |||||||||||||| ||||| |  |||||||  || ||||| |||||||| |  |||||  | ||||| | ||||||||| || || | |||||| ||||    
T  259421 ccaaacccttgcatttcttcagttgtttgccaaaacttctttttctcttctattggaaggttgaagaatttttgaacaccaattttaatattttctacca 259520  T
Q  270 ataaaggatcgactccgtgattaatcaactgtaat 304  Q
    ||||||| | |||||| |||||||| | |||||||    
T  259521 ataaagggttgactccatgattaattagctgtaat 259555  T

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Target: scaffold0328 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 373 - 541
Target Start/End: Complemental strand, 5401 - 5233
Alignment:
Q  373 caaacctggaagaacccccattctttgcatgcttgatcaaggttttctagctcagttgcatcttcagataacaatttatttaggtcaatgactggaacyt 472  Q
    |||||||||||||| |||||||| || || || || || || || || |||||||||||||||||| |||| || ||||  | ||  || | ||| |  |    
T  5401 caaacctggaagaaaccccattccttacaagcatggtctagcttctcaagctcagttgcatcttcacataataacttatcaaagttgataattgggattt 5302  T
Q  473 gttgtaaggaagatgtttttgataaagcaatagggtcttgatttggttgaagatattgttctggaactt 541  Q
    || |||| || | ||| || |||| | ||||||||||||||||||||||||||||||||| ||||||||    
T  5301 gtggtaaagaggttgtgttagatacaacaatagggtcttgatttggttgaagatattgttttggaactt 5233  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 371 - 437
Target Start/End: Original strand, 26915406 - 26915472
Alignment:
Q  371 ttcaaacctggaagaacccccattctttgcatgcttgatcaaggttttctagctcagttgcatcttc 437  Q
    |||||||||||||||| ||||||||||||||||| ||||| |  |||||||| |||||| |||||||    
T  26915406 ttcaaacctggaagaaaccccattctttgcatgcatgatcgaatttttctagttcagttccatcttc 26915472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 300
Target Start/End: Original strand, 26915020 - 26915111
Alignment:
Q  209 ttcttctcttccaccggaagacttaagaactcttgaacacctatcttcacattttccaccaataaaggatcgactccgtgattaatcaactg 300  Q
    |||||||||||||| || ||| | ||||| ||||| |||  | | || | |||||||||||||||||||| |||||||||||| ||||||||    
T  26915020 ttcttctcttccactggcagattgaagaagtcttggacaagttttttaaaattttccaccaataaaggattgactccgtgattgatcaactg 26915111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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