View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0116-INSERTION-3 (Length: 312)
Name: NF0116-INSERTION-3
Description: NF0116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0116-INSERTION-3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 8073057 - 8072746
Alignment:
| Q |
1 |
tctaaaagagagaggaaactaagaaggaaataaaatatacatcaaattaaatattgtttgctattgtttccaaaaggtttcttgagcctgaaaatttgaa |
100 |
Q |
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| T |
8073057 |
tctaaaagagagaggaaactaagaaggaaataaaatatacatcaaattaaatattgtttgctattgtttccaaaaggtttcttgagcctgaaaatttgaa |
8072958 |
T |
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| Q |
101 |
gccctgtcttcctagcttgagctgctgccaaaactctatttgttgtagtttcatcgaactgttgatacgaggccgcgtcgatcaactcttctgctgttga |
200 |
Q |
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| T |
8072957 |
gccttgtcttcctagcttgagctgctgccaaaactctatttgttgtagtttcatcgaactgttgatacgaggccgcgtcgatcaactcttctgctgttga |
8072858 |
T |
|
| Q |
201 |
gttcagatcaggaagagctattaggccattattatcattgttgttgatgttgatgcccaatgtaacagaagaagaggacggtccataattatggttctga |
300 |
Q |
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| T |
8072857 |
gttcagatcaggaagagctattaggccattattatcattgttgttgatgttgatgcccaatgtaacagaagaagaggacggtccataattatggttctga |
8072758 |
T |
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| Q |
301 |
tgatttggaaac |
312 |
Q |
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| T |
8072757 |
tgatttggaaac |
8072746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 8069442 - 8069323
Alignment:
| Q |
9 |
agagaggaaactaagaaggaaataaaatatacatcaaattaaatattgtttgctattgtttccaaaaggtttcttgagcctgaaaatttgaagccctgtc |
108 |
Q |
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|||||||||||||| |||||||||||||| |||||||| | ||| |||||| || ||||||||||||||||| ||||||||||| | ||||||| | | |
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| T |
8069442 |
agagaggaaactaaaaaggaaataaaataaacatcaaaatgaatgttgtttactcttgtttccaaaaggttttttgagcctgaatttctgaagccttctt |
8069343 |
T |
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| Q |
109 |
ttcctagcttgagctgctgc |
128 |
Q |
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| T |
8069342 |
tgcctagcttgagctgctgc |
8069323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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