View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0116-INSERTION-5 (Length: 393)
Name: NF0116-INSERTION-5
Description: NF0116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0116-INSERTION-5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 2389695 - 2389303
Alignment:
| Q |
1 |
gaagcatgtagctagataccccagttcctatacagtaacatgtatatttcatgtatcttgagaattgagattgttggataacaatgttttatgtactaaa |
100 |
Q |
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| T |
2389695 |
gaagcatgtagctagataccccagttcctatacagtaacatgtatatttcatgtatcttgagaattgagattgttggatgacaatgttttatgtactaaa |
2389596 |
T |
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| Q |
101 |
ttattttattcagcttcgagtttcgcctaagggtctgtttggcagcagatggccgtctgaatatgatatctcgcatccggaatgtcaatggcaagccttt |
200 |
Q |
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| T |
2389595 |
ttattttattcagcttcgagtttcgcctaagggtctgtttggcagcagatggccgtctgaatatgatatctcgcatccggaatgtcaatggcaagccttt |
2389496 |
T |
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| Q |
201 |
cagtttctcctttgcatttcatacatatttctccatatctgatatcaggtctgtatgctattccaacactttcaagataagatcaagatcgattatttta |
300 |
Q |
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| T |
2389495 |
cagtttctcctttgcatttcatacatatttctcgatatccgatatcaggtctgtatgctattccaacactttcaagataagatcaagatcaattatttta |
2389396 |
T |
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| Q |
301 |
tcaaggaatcaatctgttctgaaatattaatttcttttcacaagtccttttgtttatttttaaattttataaagttgcaaaactttgaattcg |
393 |
Q |
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| T |
2389395 |
tcaaggaatcaatctgttctgaaatattaatttcttttcacgagtccttttgtttatttttaaattttataaagttgcaaaactttgaattcg |
2389303 |
T |
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