View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0116-INSERTION-9 (Length: 512)
Name: NF0116-INSERTION-9
Description: NF0116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0116-INSERTION-9 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 14209313 - 14209700
Alignment:
| Q |
1 |
cttaaagttaaacagttttacacgtaaatgtattttttatagggaagttttacacataaaagttaatcactatctttcnnnnnnnnnnnnnnnttaatcg |
100 |
Q |
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| T |
14209313 |
cttaaagttaaacagttttacacgtaaatgtattttttatcgggaagttttacacataaaagttaatcactatctttcaaaaaaaaaaat---ttaatca |
14209409 |
T |
|
| Q |
101 |
ctatattagagacataattcatattttataagtaaggaaacaatatttttaaaattaagataaaattatctaaccctgcttttattttcttttcaaggaa |
200 |
Q |
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| T |
14209410 |
ctatattagagacataattcatattttataagtaagaaaacaatatttttaaaattaagataaaattatctaaccctgcttttattttcttttcaaggaa |
14209509 |
T |
|
| Q |
201 |
gtcgggcttttaattattgaaaagagattaaataaataaacgattagttaaaaaataaccaaggtttctgtgaagnnnnnnnctaaagtagagtcaaatt |
300 |
Q |
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| T |
14209510 |
gtcgagcttttaattattgaaaagagattaaataaataaacgattagttaaaaaataaccaaggtttctgtgaagaaaaaaactaaagtagagtcaaatt |
14209609 |
T |
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| Q |
301 |
taaccactcgtgaccaccttattactctactacttaactctcttatctcagccaccaaactcttgaattgaaccgaatcataatatgttcc |
391 |
Q |
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| T |
14209610 |
taatcactcgtgaccaccttattactctactacttaactctcttatctcagccaccaaactcttgaattgaaccgaatcataatatgttcc |
14209700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 421 - 512
Target Start/End: Original strand, 14209874 - 14209963
Alignment:
| Q |
421 |
taatttggggcaatgagatcaaatcaattttcatcattccatcatgaaattatttaaacagtaagtttttattcctttcctctccatcctat |
512 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
14209874 |
taatttgggacaatgagatcaaatcaattttcatcattccatcatgaaattatttaaacagtaag--tttattccttttctctccatcctat |
14209963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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