View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0117A1 (Length: 704)

Name: NF0117A1
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0117A1
NF0117A1
[»] chr8 (1 HSPs)
chr8 (11-678)||(32815917-32816558)


Alignment Details
Target: chr8 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 11 - 678
Target Start/End: Original strand, 32815917 - 32816558
Alignment:
Q  11 aatgtgatatgtgactgagaggaacgttactgagaatgagatagtgaagttacggaatagaatgaatgaaactactgtgtaactgtgtttgtttctgtgg 110  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||            |    
T  32815917 aatgtgatatgtgactgagaggaacgttactgagaattagatagtgaagtaacggaatagaatgaatgaaactactgtgtaactgtg------------g 32816004  T
Q  111 gacctacttcctcttcttttcagatatttattatttgtgtctgaattgtgatctcagttacgtggatcagacggttcacaacgtagattctttattccaa 210  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32816005 gacctacttcctcttcttttcagatatttattatttgtgactgaattgtgatctcagttacgtggatcagacggttcacaacgtagattctttattccaa 32816104  T
Q  211 tggaaccttccactattttcagtgaaagtgagtaaggtgaaaatctccattttacccctactttatcttgcttgcttatgttatgtggtccacgtttgag 310  Q
    |||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32816105 tggaaccttccactattttcagtga---------------aaatctccattttacccctactttatcttgcttgcttatgttatgtggtccacgtttgag 32816189  T
Q  311 ttcatatcatcatgcatcgaatttagagttagatcctttttatcctatcggtgtgtgtctcacttaattaagtaaatttctataaatatcatatcatatt 410  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32816190 ttcatatcatcatgcatcgaatttagagttagatcctctttatcctatcggtgtgtgtctcacttaattaagtaaatttctataaatatcatatcatatt 32816289  T
Q  411 atcatgcatgcgactgtgtattaactcttgtgtaccttgcaagttagttagccagctgtcaagtttgttactctagcttgtaatgaaagtttgtgtatta 510  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32816290 attatgcatgcgactgtgtattaactcttgtgtaccttgcaagttagttaaccagctgtcaagtttgttactctagcttgtaatgaaagtttgtgtatta 32816389  T
Q  511 gagtccgttttgattaacttatttgaacttatccattgacttaaataactaaatagtgtacacttctattttctaatgtttgaaggagaaaattcaaata 610  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  32816390 gagtccgttttgattgacttatttgaacttatctattgacttaaataactaaatagtgtacacttctatttgctaatgtttgaaggataaaattcaaata 32816489  T
Q  611 tataactcgattaacgaaagag-aagttctatatagtgtaagaattgaatgcatacatggtcttcaaaa 678  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32816490 tataactcgattaatgaaagagaaagttctatatagtgtaagaattgaatgcatacatggtcttcaaaa 32816558  T

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