View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0117A13 (Length: 734)

Name: NF0117A13
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0117A13
NF0117A13
[»] chr1 (1 HSPs)
chr1 (10-713)||(30081923-30082628)


Alignment Details
Target: chr1 (Bit Score: 639; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 10 - 713
Target Start/End: Original strand, 30081923 - 30082628
Alignment:
Q  10 cgtagaggtgtagaacaataagctttgggatctataggaaagcagttacatggtggtaactaaattacagaaaacaaacttcttgacagaggacnnnnnn 109  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  30081923 cgtagaggtgtggaacaataagctttgggatctataggaaagcagttacatggtggtaactaaattacagaaaacaaacttcttgacagaggacaaaaaa 30082022  T
Q  110 ntagaagggaaaaagttagcacatcaactcaatattttatgaattgtaaaccattagcatcagagtatcgctccatgaatctcatgaacctatcccagtc 209  Q
     |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30082023 atagaagggaaaaagttagaacatcaactcaatattttatgaattgtaaaccattagcatcagagtatcgctccatgaatctcatgaacctatcccagtc 30082122  T
Q  210 ccgtggagtccgcattatatacttggcttcaattcctgagggctttccgttgacaaatttagcatttacatcaacagattgaaggactccttcctcatca 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30082123 ccgtggagtccgcattatatacttggcttcaattcctgagggctttccgttgacaaatttagcatttacatcaacagattgaaggactccttcctcatca 30082222  T
Q  310 atcatataaaaaccagtaatgtcgcctacttctccagaagaatcaaaaactgagggttgatcaaacctgaagatagccatgccatttgttccatcctttg 409  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30082223 atcatataaaaaccagtaatgtcacctacttctccagaagaatcaaaaactgagggttgatcaaacctgaagatagccatgccatttgttccatcctttg 30082322  T
Q  410 attttgtcagcttcacatcaggtattgtcagttcatcagttccttgaatgaattgaattttgggcttccctgccatcatgataaccggcatgtgcatggg 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30082323 attttgtcagcttcacatcaggtattgtcagttcatcagttccttgaatgaattgaattttgggcttccctgccatcatgataaccggcatgtgcatggg 30082422  T
Q  510 agttttttgagttatcatcggtaacctcaaacttggcacatgcaaatgttgaccattgaatggaggaatttaagttcaaacttccatggataattaaaga 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30082423 agttttttgagttatcatcggtaacctcaaacttggcacatgcaaatgttgaccattgaat-gaggaatttaagttcaaacttccatggataattaaaga 30082521  T
Q  610 agtggctgcataaacaaatagtctataattttcatcatgaatatcatatcatgtgcatgactttttattatctatggct-aaaatcttcaa--gaatcat 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||   ||||||    
T  30082522 agtggctgcataaacaaatagtctataattttcatcatgaatatcatatcatgtgcatgactttttattttctatggctaaaaatcttcaaagaaatcat 30082621  T
Q  707 atgttca 713  Q
    |||||||    
T  30082622 atgttca 30082628  T

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