View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0117A14 (Length: 733)
Name: NF0117A14
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117A14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 287 - 704
Target Start/End: Original strand, 34646783 - 34647204
Alignment:
| Q |
287 |
ttccagtgggattcgaactctgtccttttaagttataaagtcaaaccctaaccactgatctaaaaccatttatttggatttaaaagattggacaaataaa |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34646783 |
ttccagtgggattcgaactctgtccttttaagttataaagtcaaaccctaaccactgatctgaaaccatttatttggatttaaaagattggacaaataaa |
34646882 |
T |
|
| Q |
387 |
gtagtcttcgcgacatcaccacatacaagtagaaaatgacattctaagaatgggactttattgtatttaaattagtttttgatcttgaggttcatagtgt |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34646883 |
gtagtcttcgcgacatcaccacatacaagtagaaaatgacattctaagaatgggactttattgtatttaaattagtttttgatcttgaggttcatagtgt |
34646982 |
T |
|
| Q |
487 |
aatcaaatacagtaagtaaactaaagaaaaatttaaaatatgagagagaggttaagaaaccagttcatagatgaggcatccaacagtgatggtccaaaat |
586 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34646983 |
aatcaaatacagtaagtaaactaaagaaaaatttaaaatatgagagagaggttaagaaaccagttcatagatgaggcatccaacagtgatggtccaaaat |
34647082 |
T |
|
| Q |
587 |
cttccagcaaatgagtctgc-agtagagccccaataagaggggtgaagctagatgttcc-cccaagttggtgagtgtatttgaagcggctacc-atggca |
683 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||| |||||| |
|
|
| T |
34647083 |
cttccagcaaatgagtctgcaagtaaagccccaataagaggggtgaagctagatgttccaccaaagtttgtgagtgtatttgaagcagctaccaatggca |
34647182 |
T |
|
| Q |
684 |
ta-tccactcttgggttaggta |
704 |
Q |
| |
|
|| || |||||||||||||||| |
|
|
| T |
34647183 |
tattcaactcttgggttaggta |
34647204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 10 - 288
Target Start/End: Original strand, 34646473 - 34646751
Alignment:
| Q |
10 |
attggtctgccgaaaaaggtacaacacaaggtctaatgccgcctgatccaagagatgtgaggaggagagacatgtagagtggtaataattgtgaagatgt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34646473 |
attggtctgccgaaaaaggtacaacacaaggtctaatgccgcctgatccaagagatgtgaggaggagagacatgtagagtggtaataattgtgaagatgt |
34646572 |
T |
|
| Q |
110 |
cgcttctttgcaatttacttgtgttggacatggtggaggacggaaatgtggtagtatagttgataccgtaatactaatcaatccctgtttcaagcaaaat |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34646573 |
ggcttctttgcaatttacttgtgttggacatggtggaggacggaaatgtggtagtatagttgataccgtaatactaatcaatccctgtttcaagcaaaat |
34646672 |
T |
|
| Q |
210 |
aacatggtaacttgattaacaagtaatgcaatactatgtagtattaaaacgaaaacactaatgtttcaaatcatttatt |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34646673 |
aacatggtaacttgattaacaagtaatgcaatactatgtagtattaaaacgaaaacactaatgtttcaaatcatttatt |
34646751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 30 - 174
Target Start/End: Original strand, 34660946 - 34661090
Alignment:
| Q |
30 |
acaacacaaggtctaatgccgcctgatccaagagatgtgaggaggagagacatgtagagtggtaataattgtgaagatgtcgcttctttgcaatttactt |
129 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||| |||| | ||||| ||| | | | | |||||||||| || | |||| || ||||| |||| |
|
|
| T |
34660946 |
acaacacaaggtctaataccacctgatccaagagatatgagaacaagagagatgaaaaatattgataattgtgaggagtttgctttttgacaattcactt |
34661045 |
T |
|
| Q |
130 |
gtgttggacatggtggaggacggaaatgtggtagtatagttgata |
174 |
Q |
| |
|
| |||||||||||||||||||| | ||||| ||||||||||||| |
|
|
| T |
34661046 |
gagttggacatggtggaggacgcatgtgtgggagtatagttgata |
34661090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 34666243 - 34666379
Alignment:
| Q |
21 |
gaaaaaggtacaacacaaggtctaatgccgcctgatccaagagatgtgaggaggagagacatgtagagtggtaataattgtgaagatgtcgcttctttgc |
120 |
Q |
| |
|
|||||||| |||||||| | ||||||||| |||||||||||||||||||| | ||| | | |||||| ||| |||||| ||| | ||||||| | |
|
|
| T |
34666243 |
gaaaaaggcacaacacatgatctaatgccacctgatccaagagatgtgagaaagagtgctagatagagtatccatagttgtgaggatttggcttcttgac |
34666342 |
T |
|
| Q |
121 |
aatttacttgtgttggacatggtggaggacggaaatg |
157 |
Q |
| |
|
|||| ||||||||||| || ||||||||||| ||||| |
|
|
| T |
34666343 |
aattcacttgtgttgggcagggtggaggacgaaaatg |
34666379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1649 times since January 2019
Visitors: 1426