View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0117A15 (Length: 459)

Name: NF0117A15
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0117A15
NF0117A15
[»] chr8 (3 HSPs)
chr8 (16-459)||(31693982-31694423)
chr8 (228-272)||(39656913-39656957)
chr8 (228-272)||(45163116-45163160)
[»] chr4 (3 HSPs)
chr4 (23-272)||(45534033-45534282)
chr4 (176-247)||(23383340-23383411)
chr4 (204-272)||(5825339-5825407)
[»] chr2 (5 HSPs)
chr2 (182-271)||(9371795-9371884)
chr2 (229-275)||(6182094-6182140)
chr2 (203-272)||(5504349-5504418)
chr2 (219-272)||(6852799-6852852)
chr2 (231-272)||(26021913-26021954)
[»] chr5 (3 HSPs)
chr5 (181-272)||(6353689-6353780)
chr5 (234-272)||(30002869-30002907)
chr5 (226-275)||(7495254-7495303)
[»] chr7 (2 HSPs)
chr7 (228-272)||(34853333-34853377)
chr7 (228-272)||(9378734-9378778)
[»] scaffold1052 (1 HSPs)
scaffold1052 (229-275)||(332-378)
[»] chr3 (4 HSPs)
chr3 (229-275)||(32355866-32355912)
chr3 (229-272)||(23379337-23379380)
chr3 (231-272)||(50306525-50306566)
chr3 (228-272)||(42147547-42147591)
[»] chr1 (5 HSPs)
chr1 (228-272)||(51610220-51610264)
chr1 (231-272)||(3788440-3788481)
chr1 (211-272)||(38618235-38618296)
chr1 (202-247)||(41884202-41884247)
chr1 (228-272)||(15374696-15374740)
[»] scaffold0016 (1 HSPs)
scaffold0016 (228-272)||(67252-67296)
[»] chr6 (1 HSPs)
chr6 (229-281)||(20687460-20687512)


Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 16 - 459
Target Start/End: Complemental strand, 31694423 - 31693982
Alignment:
Q  16 ttaagctgaaatgagaacatgtgaattataagaggattttgtttctgcataatggggaaaagtagaggtgcagagtgtgatagtgaggaacttggaggtg 115  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31694423 ttaagctgaaatgagaacatgtgaattataagagagttttgtttctgcagaatggggaagagtagaggtgcagagtgtgatagtgaggaacttggaggtg 31694324  T
Q  116 gtggtggagtgggncatgnaggacagaatgatgaaagatactgtaaaaataatcctatgtttgacggagtataataagagtgcgtacttcatttgatcta 215  Q
    ||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31694323 gtggtggagtggggcatggaggacagaatgatgaaagatagtgtaaaaataatcctatgtttgacggagtataataagagtgtgtacttcatttgatcta 31694224  T
Q  216 atcgttaaatttaactttcctatggtgggaaaatcttccccctacccaccctaaatgtcatccaaataaagagctcaacttgaaccaacatctctctccn 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||     
T  31694223 atcgttaaatttaactttcctatggtgggaaaatcttccccctacccaccctaaatgccatccaaacaaagagttcaacttgaaccaacatctctctcca 31694124  T
Q  316 nnnnnngtgcaactttcctaaaaataacttgtgttattagttattaccctcaagctctatttttatgnnnnnnnnnnnnnnnnaaattttggatctctga 415  Q
          |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||                  ||||||||||||||||    
T  31694123 aaaaaagtgcaactttcctaaaaaaaacttgtgttattagttattaccctcatgctctatttttat--ttttatttttatttttaattttggatctctga 31694026  T
Q  416 atcactttantctacttgtgcgaaaactcaaaaatcggnagttc 459  Q
    ||||||||| |||||||||||||||||||  ||||||| |||||    
T  31694025 atcactttaatctacttgtgcgaaaactcggaaatcgggagttc 31693982  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 39656913 - 39656957
Alignment:
Q  228 aactttcctatggtgggaaaatcttccccctacccaccctaaatg 272  Q
    ||||||||||| || ||||| |||| |||||||||||||||||||    
T  39656913 aactttcctatagtaggaaactctttcccctacccaccctaaatg 39656957  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 45163116 - 45163160
Alignment:
Q  228 aactttcctatggtgggaaaatcttccccctacccaccctaaatg 272  Q
    |||||||||||| |||||||||||| |||  ||||||||||||||    
T  45163116 aactttcctatgatgggaaaatctttccctcacccaccctaaatg 45163160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 23 - 272
Target Start/End: Complemental strand, 45534282 - 45534033
Alignment:
Q  23 gaaatgagaacatgtgaattataagaggattttgtttctgcataatggggaaaagtagaggtgcagagtgtgatagtgaggaacttggaggtggtggtgg 122  Q
    |||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  45534282 gaaatgagaacatgtgaattataagagagttttgtttctgcagaatggggaaaagtagaggtgcagagtgtgatagtgaggaacttggaagtggtgttgg 45534183  T
Q  123 agtgggncatgnaggacagaatgatgaaagatactgtaaaaataatcctatgtttgacggagtataataagagtgcgtacttcatttgatctaatcgtta 222  Q
    | |||| |||| ||||||| ||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| |||||| |||||||||| ||||||    
T  45534182 aatggggcatgaaggacaggatgatgaaagatagtgtaaaaataatactatgtttgtcggagtataataagagtgtgtactttatttgatctagtcgtta 45534083  T
Q  223 aatttaactttcctatggtgggaaaatcttccccctacccaccctaaatg 272  Q
    ||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  45534082 aatataactttcttatggtgggaaaatcttccccctacccaccctaaatg 45534033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 23383411 - 23383340
Alignment:
Q  176 ttgacggagtataataagagtgcgtacttcatttgatctaatcgttaaatttaactttcctatggtgggaaa 247  Q
    |||| ||||||| ||||||||| || |||||||||||| ||| | |||| |||||||||| |||||||||||    
T  23383411 ttgatggagtatgataagagtgtgttcttcatttgatcgaatggataaaattaactttcccatggtgggaaa 23383340  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 5825407 - 5825339
Alignment:
Q  204 tcatttgatctaatcgttaaatttaactttcctatggtgggaaaatcttccccctacccaccctaaatg 272  Q
    |||||||||||||| |||| |   |||||| ||||||||||||| |||| ||| | |||||||||||||    
T  5825407 tcatttgatctaatggttagaaaaaactttgctatggtgggaaactctttcccattcccaccctaaatg 5825339  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 271
Target Start/End: Original strand, 9371795 - 9371884
Alignment:
Q  182 gagtataataagagtgcgtacttcatttgatctaatcgttaaatttaactttcctatggtgggaaaatcttccccctacccaccctaaat 271  Q
    |||||| ||||||||| ||  ||  ||||||||||| ||||||||||| |||||||||||||||||||||| ||| | |||||| |||||    
T  9371795 gagtatcataagagtgtgttattagtttgatctaatggttaaatttaattttcctatggtgggaaaatctttcccgttcccaccttaaat 9371884  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 6182140 - 6182094
Alignment:
Q  229 actttcctatggtgggaaaatcttccccctacccaccctaaatgtca 275  Q
    ||||||||||||||| |||||||| ||| ||||||||||||||||||    
T  6182140 actttcctatggtggaaaaatctttcccttacccaccctaaatgtca 6182094  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 5504418 - 5504349
Alignment:
Q  203 ttcatttgatctaatcgttaaatttaactttcctatggtgggaaaatcttccccctacccaccctaaatg 272  Q
    ||||||||||||||| || |||  | ||||| |||| |||||||| |||| ||||| |||||||||||||    
T  5504418 ttcatttgatctaatggtcaaaaatcacttttctatagtgggaaactctttccccttcccaccctaaatg 5504349  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 6852799 - 6852852
Alignment:
Q  219 gttaaatttaactttcctatggtgggaaaatcttccccctacccaccctaaatg 272  Q
    |||||| || |||||||||||||||||||   |||| |||||||||||||||||    
T  6852799 gttaaaatttactttcctatggtgggaaagaattcctcctacccaccctaaatg 6852852  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 26021913 - 26021954
Alignment:
Q  231 tttcctatggtgggaaaatcttccccctacccaccctaaatg 272  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  26021913 tttcctatggtgggaaactctttccccttcccaccctaaatg 26021954  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 272
Target Start/End: Complemental strand, 6353780 - 6353689
Alignment:
Q  181 ggagtataataagagtgcgtacttcatttgatctaatcgttaaatttaactttcctatggtgggaaaatcttccccctacccaccctaaatg 272  Q
    ||||||| |||| |||| ||  ||||||| ||||||| |||||| || ||||||||||| |||||||||||| |||  ||||||||||||||    
T  6353780 ggagtatgataaaagtgtgtttttcatttcatctaatggttaaaatttactttcctatgatgggaaaatctttccctcacccaccctaaatg 6353689  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 272
Target Start/End: Complemental strand, 30002907 - 30002869
Alignment:
Q  234 cctatggtgggaaaatcttccccctacccaccctaaatg 272  Q
    ||||||||||||||||||| ||||| |||||||||||||    
T  30002907 cctatggtgggaaaatctttccccttcccaccctaaatg 30002869  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 7495254 - 7495303
Alignment:
Q  226 ttaactttcctatggtgggaaaatcttccccctacccaccctaaatgtca 275  Q
    |||||||||  |||||||||||   |||||||||||||||||||||||||    
T  7495254 ttaactttctcatggtgggaaagaattccccctacccaccctaaatgtca 7495303  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 34853333 - 34853377
Alignment:
Q  228 aactttcctatggtgggaaaatcttccccctacccaccctaaatg 272  Q
    |||||||||||||||||||| |||||| |||||||||||||||||    
T  34853333 aactttcctatggtgggaaagtcttcctcctacccaccctaaatg 34853377  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 272
Target Start/End: Complemental strand, 9378778 - 9378734
Alignment:
Q  228 aactttcctatggtgggaaaatcttccccctacccaccctaaatg 272  Q
    |||||||| ||||||| |||||||| ||||| |||||||||||||    
T  9378778 aactttcccatggtggaaaaatctttccccttcccaccctaaatg 9378734  T

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Target: scaffold1052 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1052
Description:

Target: scaffold1052; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 378 - 332
Alignment:
Q  229 actttcctatggtgggaaaatcttccccctacccaccctaaatgtca 275  Q
    ||||||||||||||||||||||||  || ||||||||||||||||||    
T  378 actttcctatggtgggaaaatcttttccttacccaccctaaatgtca 332  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 32355912 - 32355866
Alignment:
Q  229 actttcctatggtgggaaaatcttccccctacccaccctaaatgtca 275  Q
    ||||||||||||||| |||||||| ||| ||||||||||||||||||    
T  32355912 actttcctatggtggaaaaatctttcccttacccaccctaaatgtca 32355866  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 272
Target Start/End: Complemental strand, 23379380 - 23379337
Alignment:
Q  229 actttcctatggtgggaaaatcttccccctacccaccctaaatg 272  Q
    |||||||||| ||||||||||||| ||| |||||||||||||||    
T  23379380 actttcctatagtgggaaaatctttcccttacccaccctaaatg 23379337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 50306525 - 50306566
Alignment:
Q  231 tttcctatggtgggaaaatcttccccctacccaccctaaatg 272  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  50306525 tttcctatggtgggaaactctttccccttcccaccctaaatg 50306566  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 42147547 - 42147591
Alignment:
Q  228 aactttcctatggtgggaaaatcttccccctacccaccctaaatg 272  Q
    ||||| || |||||||||||||||| ||||| |||||||||||||    
T  42147547 aacttgcccatggtgggaaaatctttccccttcccaccctaaatg 42147591  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 51610220 - 51610264
Alignment:
Q  228 aactttcctatggtgggaaaatcttccccctacccaccctaaatg 272  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||    
T  51610220 aactttcccatggtgggaaaatattcctcctacccaccctaaatg 51610264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 3788481 - 3788440
Alignment:
Q  231 tttcctatggtgggaaaatcttccccctacccaccctaaatg 272  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  3788481 tttcctatggtgggaaactctttccccttcccaccctaaatg 3788440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 38618296 - 38618235
Alignment:
Q  211 atctaatcgttaaatttaactttcctatggtgggaaaatcttccccctacccaccctaaatg 272  Q
    ||||||| || ||| |||||||||| |||||||||||   |||| |||||||||||||||||    
T  38618296 atctaatggtcaaacttaactttcccatggtgggaaagaattcctcctacccaccctaaatg 38618235  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 41884202 - 41884247
Alignment:
Q  202 cttcatttgatctaatcgttaaatttaactttcctatggtgggaaa 247  Q
    |||||||||||||||| |||| | | ||||||||||||||||||||    
T  41884202 cttcatttgatctaatagttagaatcaactttcctatggtgggaaa 41884247  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 15374696 - 15374740
Alignment:
Q  228 aactttcctatggtgggaaaatcttccccctacccaccctaaatg 272  Q
    ||||| || |||||||||||||||| ||||| |||||||||||||    
T  15374696 aacttgcccatggtgggaaaatctttccccttcccaccctaaatg 15374740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 272
Target Start/End: Complemental strand, 67296 - 67252
Alignment:
Q  228 aactttcctatggtgggaaaatcttccccctacccaccctaaatg 272  Q
    ||||| || |||||||||||||||| ||||| |||||||||||||    
T  67296 aacttgcccatggtgggaaaatctttccccttcccaccctaaatg 67252  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 20687512 - 20687460
Alignment:
Q  229 actttcctatggtgggaaaatcttccccctacccaccctaaatgtcatccaaa 281  Q
    ||||||||||||||||||| | |||| |||||| |||||||||| || |||||    
T  20687512 actttcctatggtgggaaagtattcctcctacctaccctaaatgccacccaaa 20687460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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