View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0117A16 (Length: 635)

Name: NF0117A16
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0117A16
NF0117A16
[»] chr4 (13 HSPs)
chr4 (7-333)||(8749895-8750219)
chr4 (411-619)||(8750294-8750502)
chr4 (6-64)||(9012039-9012097)
chr4 (8-58)||(24142268-24142318)
chr4 (7-58)||(20654714-20654765)
chr4 (7-98)||(34151121-34151211)
chr4 (9-55)||(19350782-19350828)
chr4 (9-58)||(3999483-3999532)
chr4 (7-95)||(292117-292205)
chr4 (7-95)||(15186246-15186332)
chr4 (7-98)||(16572583-16572674)
chr4 (7-95)||(32217048-32217134)
chr4 (7-95)||(43202480-43202566)
[»] chr7 (10 HSPs)
chr7 (7-53)||(41468728-41468774)
chr7 (7-58)||(5785504-5785555)
chr7 (7-95)||(34333287-34333373)
chr7 (7-95)||(47656983-47657069)
chr7 (7-98)||(30924086-30924177)
chr7 (9-58)||(34435752-34435801)
chr7 (7-95)||(6097339-6097427)
chr7 (7-55)||(7689297-7689344)
chr7 (7-95)||(8754682-8754768)
chr7 (7-95)||(34556986-34557073)
[»] chr3 (13 HSPs)
chr3 (7-64)||(25743843-25743900)
chr3 (7-72)||(27644027-27644091)
chr3 (7-95)||(48725274-48725360)
chr3 (10-64)||(40614463-40614517)
chr3 (7-64)||(26966529-26966586)
chr3 (9-72)||(34300711-34300774)
chr3 (259-333)||(54547994-54548068)
chr3 (7-56)||(13898988-13899037)
chr3 (7-100)||(20923990-20924081)
chr3 (7-72)||(27994396-27994460)
chr3 (7-95)||(272223-272309)
chr3 (7-95)||(39074422-39074508)
chr3 (7-95)||(52520684-52520770)
[»] chr2 (14 HSPs)
chr2 (7-104)||(20552925-20553020)
chr2 (7-95)||(44331742-44331830)
chr2 (7-55)||(40210250-40210298)
chr2 (16-95)||(29771419-29771498)
chr2 (7-53)||(45213386-45213432)
chr2 (7-100)||(44587900-44587991)
chr2 (7-95)||(44854436-44854523)
chr2 (7-58)||(5358600-5358651)
chr2 (7-96)||(4381797-4381884)
chr2 (7-56)||(30834458-30834507)
chr2 (7-95)||(561615-561701)
chr2 (7-95)||(28012050-28012137)
chr2 (7-99)||(31782661-31782753)
chr2 (7-95)||(32860105-32860191)
[»] chr1 (10 HSPs)
chr1 (7-100)||(52702241-52702334)
chr1 (7-95)||(28726001-28726089)
chr1 (7-95)||(38595848-38595936)
chr1 (7-96)||(33644431-33644518)
chr1 (7-95)||(15227742-15227828)
chr1 (7-58)||(45844433-45844484)
chr1 (7-95)||(18043165-18043251)
chr1 (7-95)||(10679513-10679600)
chr1 (7-95)||(19031912-19031998)
chr1 (19-95)||(29657774-29657849)
[»] scaffold0264 (1 HSPs)
scaffold0264 (7-95)||(22964-23050)
[»] chr6 (7 HSPs)
chr6 (7-95)||(22021634-22021722)
chr6 (7-95)||(1127818-1127906)
chr6 (7-95)||(34706723-34706811)
chr6 (7-96)||(3246183-3246271)
chr6 (9-53)||(26879245-26879289)
chr6 (7-64)||(11633952-11634008)
chr6 (7-95)||(392099-392185)
[»] chr5 (13 HSPs)
chr5 (7-99)||(11846071-11846161)
chr5 (7-100)||(40608631-40608724)
chr5 (7-72)||(6042144-6042208)
chr5 (7-95)||(13661811-13661897)
chr5 (7-95)||(39234834-39234921)
chr5 (9-64)||(17534240-17534295)
chr5 (7-46)||(20719327-20719366)
chr5 (7-104)||(34650930-34651024)
chr5 (7-95)||(10054449-10054535)
chr5 (7-95)||(10069972-10070058)
chr5 (7-95)||(14214145-14214233)
chr5 (225-265)||(18160091-18160130)
chr5 (7-95)||(35132525-35132611)
[»] chr8 (12 HSPs)
chr8 (7-95)||(34228685-34228771)
chr8 (7-58)||(4811597-4811648)
chr8 (7-58)||(16196901-16196952)
chr8 (7-74)||(22199233-22199300)
chr8 (9-64)||(33124591-33124646)
chr8 (11-54)||(42449008-42449051)
chr8 (9-55)||(33899108-33899154)
chr8 (7-111)||(42035078-42035185)
chr8 (7-95)||(29566703-29566791)
chr8 (7-95)||(30675669-30675755)
chr8 (7-95)||(33357226-33357312)
chr8 (7-75)||(40267944-40268012)
[»] scaffold0204 (1 HSPs)
scaffold0204 (9-54)||(14153-14197)
[»] scaffold0460 (1 HSPs)
scaffold0460 (6-35)||(12990-13019)


Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 7 - 333
Target Start/End: Original strand, 8749895 - 8750219
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattttccaataaaga 106  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||| ||| ||||||    
T  8749895 taattacacaattttcaatgtaataattattataaaattttcttttttagtaaccttagccagtgc-cccggagcaccggttagcatttcccattaaaga 8749993  T
Q  107 aagcatgtcgccacacttcatannnnnnnctaggcttattagtagttttgcccactctaagtatcacaaacttgcggttttgaccctctnnnnnnncaaa 206  Q
    ||||||||||||||||||||||       |||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||       ||||    
T  8749994 aagcatgtcgccacacttcatatttttttctaggcttattagtagttttgcccatcctaagtatcacaaacttgcgattttgaccctcttaaaaaacaaa 8750093  T
Q  207 gacaactcagcttcataagtttagcccattttgcagttttggtcccccggatcaatttttatccaatcaatacacaagtgacacctcacttaaatgactg 306  Q
     ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8750094 tacaactcagctccataagtttagcccattttgcagttttggtcccc-ggatcaatttttatccagtcaatacacaagtgacacctcacttaaatgactg 8750192  T
Q  307 agatgtcatgtgtgtaattttttaatt 333  Q
    |||||||| ||||||||||||||||||    
T  8750193 agatgtcacgtgtgtaattttttaatt 8750219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 411 - 619
Target Start/End: Original strand, 8750294 - 8750502
Alignment:
Q  411 ggcaaagaatcgtggagatgggatgaacatctatctctttctcctcataaccaagcccagcaaatagaaagcaaatatgagagtaactacaactttgtct 510  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  8750294 ggcaaagaatcgtggagatgggatgaacatctatctctttctcctcataaccaaacccagcaaatagaaagcaaatatgagagcaactacaactttgtct 8750393  T
Q  511 atgccttatcaacaattcaacttccgctctctaattcagcttcaagatctctctcactttctctctctatgaagtatttagagcattacctataggtatg 610  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||     
T  8750394 atgccttatcaacaattcaacttcctctctctaattcagcttcaagatctctttcactttctctctctatgaagtatttagagcattacctataggtatt 8750493  T
Q  611 gggatgtgg 619  Q
    | |||||||    
T  8750494 gtgatgtgg 8750502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 9012097 - 9012039
Alignment:
Q  6 ctaattacacaattttcaatgtaataattactataaaatttccttttttagtaacctta 64  Q
    |||||||||||||||||| |  | ||||||||||||||||| ||||||||||| |||||    
T  9012097 ctaattacacaattttcattacattaattactataaaattttcttttttagtaccctta 9012039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 24142268 - 24142318
Alignment:
Q  8 aattacacaattttcaatgtaataattactataaaatttccttttttagta 58  Q
    ||||| ||||||||||||| ||||||||||||| |||||| ||||||||||    
T  24142268 aattaaacaattttcaatgcaataattactatataatttctttttttagta 24142318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 20654765 - 20654714
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagta 58  Q
    |||||||||||||||||||| ||||  |||| || |||||||||||||||||    
T  20654765 taattacacaattttcaatgcaatagctactctataatttccttttttagta 20654714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 34151211 - 34151121
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattttcc 98  Q
    |||||| ||||||||||||| ||||||||  ||| ||||| | |||||| || ||||| ||||||| ||||| ||| || ||||||||||||    
T  34151211 taattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaaccagtgc-cccggggcatcggttagcattttcc 34151121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 19350782 - 19350828
Alignment:
Q  9 attacacaattttcaatgtaataattactataaaatttcctttttta 55  Q
    |||||||||||||||||  ||||||||||||  ||||||||||||||    
T  19350782 attacacaattttcaattcaataattactatttaatttcctttttta 19350828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 3999483 - 3999532
Alignment:
Q  9 attacacaattttcaatgtaataattactataaaatttccttttttagta 58  Q
    |||||||||||||||||| || || ||||||  |||||||||||||||||    
T  3999483 attacacaattttcaatgcaacaactactatgtaatttccttttttagta 3999532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 292205 - 292117
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||| ||||||||||||| ||||||||  ||| |||||   |||||| || ||||| || |||| ||||| |||||| |||||||||    
T  292205 taattaaacaattttcaatgcaataattaacatataatttttctttttattatccttaaccggtgcccccggggcaccggttagcattt 292117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 15186332 - 15186246
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||||||||||| ||||| | ||| ||||||| |||||||||||| | || ||||| ||||||| || || |||||| |||||||||    
T  15186332 taattacacaattt-caatggattaactactatataatttcctttttca-tacccttaaccagtgccccgggggcaccggttagcattt 15186246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 16572583 - 16572674
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccgga-gcaccgcttagcattttcc 98  Q
    |||||| ||||||||||||| ||||||||  ||| ||||||  |||||| || ||||| ||||||| | |||| |||||| ||||||||||||    
T  16572583 taattaaacaattttcaatgcaataattaacatataatttctctttttattatccttaaccagtgc-ctcggaggcaccggttagcattttcc 16572674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 32217134 - 32217048
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||||||||||| ||||| | ||| ||||||| |||||||||||||| || ||||| ||||||| || || |||||  |||||||||    
T  32217134 taattacacaattt-caatgcattaactactatataatttcctttttta-tatccttaaccagtgccccgggggcaccagttagcattt 32217048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 43202480 - 43202566
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    ||||||||||||||| |||| | ||||||||||| |||||||||||| | || ||||| | ||||| || || |||||| |||||||||    
T  43202480 taattacacaatttt-aatgcattaattactatataatttcctttttca-tacccttaactagtgccccgggggcaccggttagcattt 43202566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 41468728 - 41468774
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttt 53  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  41468728 taattacacaattttcaatgtaataattactatataatttccttttt 41468774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 5785555 - 5785504
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagta 58  Q
    ||||||||||||||||| |  | |||||||||||||||||||||||||||||    
T  5785555 taattacacaattttcactacattaattactataaaatttccttttttagta 5785504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 34333373 - 34333287
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||||||||||| ||||| | ||||||||||| |||||||||||| | || ||||| ||||||| || || |||||| |||||||||    
T  34333373 taattacacaattt-caatgcattaattactatataatttcctttttca-tacccttaaccagtgccccgggggcaccggttagcattt 34333287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 47657069 - 47656983
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||||||||||| ||||| | ||||||||||| ||||| |||||| | || ||||| ||||||| |||| ||||||| |||||||||    
T  47657069 taattacacaattt-caatgcattaattactatataattttctttttca-tatccttaaccagtgcccccgaagcaccggttagcattt 47656983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 30924086 - 30924177
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattttcc 98  Q
    |||||| ||||||||||||| | ||||||  ||| ||||||| |||||| || ||||| || |||| || || |||||| ||||||||||||    
T  30924086 taattaaacaattttcaatgcactaattaacatataatttccctttttattatccttaacccgtgccccgggggcaccggttagcattttcc 30924177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 34435752 - 34435801
Alignment:
Q  9 attacacaattttcaatgtaataattactataaaatttccttttttagta 58  Q
    ||||||||||||| |||| ||||| || |||| |||||||||||||||||    
T  34435752 attacacaatttttaatgcaataactattatataatttccttttttagta 34435801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 6097427 - 6097339
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||| | ||||||||||| ||||||||  ||| ||||||| |||||| || ||||| ||||||| || || ||| || |||||||||    
T  6097427 taattaaataattttcaatgcaataattaacatataatttccctttttattatccttaaccagtgccccgggggcatcggttagcattt 6097339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 7689297 - 7689344
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttcctttttta 55  Q
    |||||||||||||| ||||| | |||||||| |||||||||||||||||    
T  7689297 taattacacaattt-caatgcattaattactgtaaaatttcctttttta 7689344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 8754682 - 8754768
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||||||||||| ||||| | ||| ||||||| |||||| ||||| | || ||||| ||||||||||| | |||||| |||||||||    
T  8754682 taattacacaattt-caatgcattaactactatataatttcatttttca-tatccttaaccagtgctcccagggcaccggttagcattt 8754768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 34556986 - 34557073
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||| ||||||||||||| ||||||||  ||| ||||||| |||||| || ||||| ||| ||| ||||| |||||  |||||||||    
T  34556986 taattaaacaattttcaatgcaataattaacatataatttccctttttattatccttaaccaatgc-cccggggcaccagttagcattt 34557073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 25743900 - 25743843
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaacctta 64  Q
    ||||||||||||||| |||| ||||||||||||| ||||||||||||||||| |||||    
T  25743900 taattacacaatttttaatgcaataattactatataatttccttttttagtatcctta 25743843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 27644091 - 27644027
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgc 72  Q
    ||||||||||||||| |||||||||||||||||| ||||| | ||||||||||| ||| |||||||    
T  27644091 taattacacaatttttaatgtaataattactatataatttac-tttttagtaactttaaccagtgc 27644027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 48725360 - 48725274
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||||||||||| ||||| | ||||||||||| |||||||||||| | || ||||| ||||||| ||||| |||||| |||||||||    
T  48725360 taattacacaattt-caatgcattaattactatataatttcctttttca-tatccttaaccagtgcccccggggcaccggttagcattt 48725274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 40614517 - 40614463
Alignment:
Q  10 ttacacaattttcaatgtaataattactataaaatttccttttttagtaacctta 64  Q
    ||||||||||||||||| ||||| ||||||| ||||||| ||||||||| |||||    
T  40614517 ttacacaattttcaatgcaataactactatataatttccctttttagtatcctta 40614463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 26966586 - 26966529
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaacctta 64  Q
    |||||| ||||||||||||| ||||| ||||||| |||||| |||||||||| |||||    
T  26966586 taattaaacaattttcaatgcaataactactatataatttctttttttagtatcctta 26966529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 34300711 - 34300774
Alignment:
Q  9 attacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgc 72  Q
    ||||||||| |||||||||||||| |||| || |||||| ||||||| || ||||| |||||||    
T  34300711 attacacaactttcaatgtaataactactgtataatttcattttttattatccttaaccagtgc 34300774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 259 - 333
Target Start/End: Original strand, 54547994 - 54548068
Alignment:
Q  259 caatttttatccaatcaatacacaagtgacacctcacttaaatgactgagatgtcatgtgtgtaattttttaatt 333  Q
    ||||||| |||||| ||| ||||| |||||| ||| ||||| |||||  |||| || ||||||||||||||||||    
T  54547994 caattttgatccaaccaacacacatgtgacatctcgcttaagtgactaggatgccacgtgtgtaattttttaatt 54548068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 13898988 - 13899037
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttag 56  Q
    |||||||| ||||||||||  ||||||||||||| ||||| |||||||||    
T  13898988 taattacaaaattttcaatacaataattactatataattttcttttttag 13899037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 20924081 - 20923990
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattttccaa 100  Q
    |||||||||||||| ||||| | ||| ||||||| |||||||||||| | || ||||| ||||||| || | ||||||| ||||||||| ||||    
T  20924081 taattacacaattt-caatgaattaactactatataatttcctttttca-tacccttaaccagtgccccggaagcaccggttagcatttcccaa 20923990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 27994396 - 27994460
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgc 72  Q
    |||||||| |||||||| |  | ||||||||||||||||| ||||||||||| ||||| |||||||    
T  27994396 taattacataattttcactacattaattactataaaattt-cttttttagtatccttaaccagtgc 27994460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 272309 - 272223
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||||||||||| ||||| | ||| ||||||| |||||||||||| | || ||||| ||||||| || || |||||| |||||||||    
T  272309 taattacacaattt-caatgcattaactactatataatttcctttttca-tatccttaaccagtgccccgggggcaccggttagcattt 272223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 39074508 - 39074422
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||||||||||| ||||| | ||| ||||||| |||||||||||| | || ||||| ||||||| || || |||||| |||||||||    
T  39074508 taattacacaattt-caatgcattaactactatataatttcctttttca-tacccttaaccagtgccccgggggcaccggttagcattt 39074422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 52520770 - 52520684
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||||||||||| ||||| | ||| ||||||| |||||||||||| | || ||||| ||||||| || || |||||| |||||||||    
T  52520770 taattacacaattt-caatgcattaactactatataatttcctttttca-tacccttaaccagtgccccgggggcaccggttagcattt 52520684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 20553020 - 20552925
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattttccaataaa 104  Q
    |||||||||||||| ||||| | ||||||||||| |||||||||||| | || ||||| ||||||| ||||| |||||| ||||||||| ||||||||    
T  20553020 taattacacaattt-caatgcattaattactatataatttcctttttca-tatccttaaccagtgcccccggggcaccggttagcatttcccaataaa 20552925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 44331830 - 44331742
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    ||||||||||| |||||||| ||||||||||||| || ||| |||||||||||||||| | ||||| || || |||||| ||| |||||    
T  44331830 taattacacaagtttcaatgcaataattactatataaattctttttttagtaaccttaactagtgccccgggggcaccgattaacattt 44331742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 40210298 - 40210250
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttcctttttta 55  Q
    ||||||||| |||||||||| ||||| ||||||||||||||||||||||    
T  40210298 taattacaccattttcaatgcaataactactataaaatttcctttttta 40210250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 29771498 - 29771419
Alignment:
Q  16 aattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    ||||||||||||||||||||  ||| |||||||||||||| || ||||| ||||||| || || ||| || |||||||||    
T  29771498 aattttcaatgtaataattaacatataatttccttttttattatccttaaccagtgccccgggggcatcggttagcattt 29771419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 45213432 - 45213386
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttt 53  Q
    |||||||||||||||||| ||||||||||||||| ||||| ||||||    
T  45213432 taattacacaattttcaacgtaataattactatataatttacttttt 45213386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 44587991 - 44587900
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattttccaa 100  Q
    |||||||||||||| ||||||| ||| ||||||| |||||||||||||| || ||||| || |||| || || |||||| ||||||||| ||||    
T  44587991 taattacacaattt-caatgtattaactactatataatttcctttttta-tatccttaaccggtgccccgggggcaccggttagcatttcccaa 44587900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 44854436 - 44854523
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||| ||||||||||||| ||||||||  ||| ||||||| |||||| || ||||| ||||||| || |||| |||| |||||||||    
T  44854436 taattaaacaattttcaatgcaataattaacatataatttcc-tttttattatccttaaccagtgccccgggagtaccggttagcattt 44854523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 5358651 - 5358600
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagta 58  Q
    |||||||||||||||||||||||||| || |||| ||||| | |||||||||    
T  5358651 taattacacaattttcaatgtaataactattatataatttacatttttagta 5358600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 4381884 - 4381797
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcatttt 96  Q
    |||||||||||||| ||||| | ||| ||||||| |||||||||||| | || ||||| ||||||| || || |||||| ||||||||||    
T  4381884 taattacacaattt-caatgcattaactactatataatttcctttttca-tacccttaaccagtgcaccgggggcaccggttagcatttt 4381797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 30834458 - 30834507
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttag 56  Q
    |||||||||| ||||||||| ||||| || |||| |||||||||||||||    
T  30834458 taattacacagttttcaatgcaataactattatataatttccttttttag 30834507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 561615 - 561701
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||||||||||| ||||| | ||| ||||||| |||||||||||| | || ||||| ||||||| || || |||||| |||||||||    
T  561615 taattacacaattt-caatgcattaactactatataatttcctttttca-tatccttaaccagtgccccgggggcaccggttagcattt 561701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 28012050 - 28012137
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    ||||| ||||||||| |||| ||||||||||||| ||||| | |||||| || ||||| |||||  |||||| |||||| ||| |||||    
T  28012050 taattccacaattttgaatgcaataattactatataattttcctttttaatatccttaaccagt-atcccggggcaccggttatcattt 28012137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 31782661 - 31782753
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattttcca 99  Q
    |||||| ||||||||||||| |||||||| |||| ||||||  |||||| || |||||  | |||| || ||  ||||| |||||||||||||    
T  31782661 taattaaacaattttcaatgcaataattaatatataatttctctttttattatccttaatccgtgccccggggacaccggttagcattttcca 31782753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 32860191 - 32860105
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||||||||||| ||||| | ||| ||||||| |||||||||||||| || ||||| || |||| ||||| |||||| ||| |||||    
T  32860191 taattacacaattt-caatgcattaaatactatataatttcctttttta-tatccttaacccgtgcccccggggcaccggttaacattt 32860105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 52702241 - 52702334
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattttccaa 100  Q
    |||||| ||||||||||||| ||||||||  ||| ||||||| |||||| || ||||| ||||||| || ||||||||| ||||||||| ||||    
T  52702241 taattaaacaattttcaatgcaataattaacatataatttccctttttattatccttaaccagtgccccgggagcaccggttagcatttcccaa 52702334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 28726001 - 28726089
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||| ||||||||||||| ||||||||  ||| |||||||||||||| || ||||| ||||||| || || |||||| |||||||||    
T  28726001 taattaaacaattttcaatgcaataattaacatataatttccttttttattatccttaaccagtgccccgggggcaccggttagcattt 28726089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 38595848 - 38595936
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||| ||||||||||||| ||||||||  ||| ||||||| |||||| || ||||| ||||||| || || |||||| |||||||||    
T  38595848 taattaaacaattttcaatgcaataattaacatataatttccctttttattatccttaaccagtgccccgggggcaccggttagcattt 38595936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 33644431 - 33644518
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcatttt 96  Q
    |||||||||||||||||||| |||||||| |||| ||||| |||||||| || ||||| || ||||| || |||||| | ||||||||||    
T  33644431 taattacacaattttcaatgcaataattattatataattttctttttta-tagccttaacctgtgct-ccagagcactggttagcatttt 33644518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 15227828 - 15227742
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||||||||||| ||||| | ||||||||||| |||||||||||| | || ||||| ||||||| ||||| | |||| |||||||||    
T  15227828 taattacacaattt-caatgcattaattactatataatttcctttttca-tatccttaaccagtgcccccggggtaccggttagcattt 15227742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 45844433 - 45844484
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagta 58  Q
    |||||| ||||||||||||||||||| |||| || | |||||||||||||||    
T  45844433 taattaaacaattttcaatgtaataactactgtacattttccttttttagta 45844484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 18043251 - 18043165
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccgga-gcaccgcttagcattt 95  Q
    |||||||||||||| ||||| | ||| ||||||| |||||||||||||| || ||||| ||||||| |||||| |||||| |||||||||    
T  18043251 taattacacaattt-caatgcattaactactatataatttcctttttta-tacccttaaccagtgc-cccggaggcaccggttagcattt 18043165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 10679600 - 10679513
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||| ||||||||||||| ||||||||  ||| ||||||| |||||| || || || ||||||| || ||||||||| ||| |||||    
T  10679600 taattaaacaattttcaatgcaataattaacatataatttccctttttattatcc-taaccagtgccccgggagcaccggttaacattt 10679513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 19031912 - 19031998
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||||||||||| ||||||  ||| ||||||| |||||||||||| | || ||||| | | ||| |||||||||||| |||||||||    
T  19031912 taattacacaattt-caatgttttaactactatataatttcctttttca-tatccttaactaatgcccccggagcaccggttagcattt 19031998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 29657849 - 29657774
Alignment:
Q  19 tttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||||| | ||| ||||||| |||||||||||||| || ||||| ||||||| || || |||||| |||||||||    
T  29657849 tttcaatgcattaactactatataatttcctttttta-tatccttaaccagtgccccgggggcaccggttagcattt 29657774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 23050 - 22964
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||||||||||| ||||||| ||||||||||| |||||||||||| | || ||||| |||||||||| || |||||| |||||||||    
T  23050 taattacacaattt-caatgtattaattactatataatttcctttttca-tatccttaaccagtgctccgggggcaccggttagcattt 22964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 22021722 - 22021634
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    ||||||||||| |||||||| ||||||||||||| || ||| |||||||||||||||| | ||||| || || |||||| ||| |||||    
T  22021722 taattacacaagtttcaatgcaataattactatataaattctttttttagtaaccttaactagtgccccgggggcaccgattaacattt 22021634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 1127906 - 1127818
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||| ||||||||||||| ||||||||  ||| ||||||| |||||| || ||||| || |||| |||||||||| | |||||||||    
T  1127906 taattaaacaattttcaatgcaataattaacatataatttccctttttattatccttaaccggtgcccccggagcactggttagcattt 1127818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 34706811 - 34706723
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||| ||||||||||||| ||||||||  ||| ||||||| |||||| || ||||| || |||| ||||| |||||| |||||||||    
T  34706811 taattaaacaattttcaatgcaataattaacatataatttccctttttattatccttaaccggtgcccccggggcaccggttagcattt 34706723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 3246183 - 3246271
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcatttt 96  Q
    ||||||||||||||| |||| |||||||||| || ||||||| ||||||||| |||||  |||||||||  | |||||| ||| ||||||    
T  3246183 taattacacaatttttaatgcaataattactgtataatttcc-tttttagtatccttaatcagtgctccaagggcaccggttaacatttt 3246271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 26879245 - 26879289
Alignment:
Q  9 attacacaattttcaatgtaataattactataaaatttccttttt 53  Q
    |||||||||||||||||  ||||||||||||| ||||||||||||    
T  26879245 attacacaattttcaatacaataattactatacaatttccttttt 26879289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 11634008 - 11633952
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaacctta 64  Q
    |||||||||||||||||||| ||||| ||||||| || || ||||||||||| |||||    
T  11634008 taattacacaattttcaatgcaataactactatataa-ttacttttttagtatcctta 11633952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 392185 - 392099
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||||||||||| ||||| | ||| ||||||| |||||||||||| | || ||||| ||||||| || || |||||| |||||||||    
T  392185 taattacacaattt-caatgcattaactactatataatttcctttttca-tacccttaaccagtgccccgggggcaccggttagcattt 392099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 11846161 - 11846071
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggag-caccgcttagcattttcca 99  Q
    |||||||||||||| ||||||| ||| ||||||| |||||||||||||| || ||||||| |||| |||||| | |||||||||||||||||||    
T  11846161 taattacacaattt-caatgtattaactactatataatttcctttttta-tatccttagctagtg-tcccggggacaccgcttagcattttcca 11846071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 40608631 - 40608724
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattttccaa 100  Q
    |||||| ||||||||||||| ||||||||  ||| ||||||| |||||| || ||||| ||||||  || ||||||||| ||||||||| ||||    
T  40608631 taattaaacaattttcaatgcaataattaacatataatttccctttttattatccttaaccagtgtcccgggagcaccggttagcatttcccaa 40608724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 6042144 - 6042208
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgc 72  Q
    |||||||||||||||||||| ||||||||||||| |||||  |||||||||| | ||| |||||||    
T  6042144 taattacacaattttcaatgcaataattactatataattt-tttttttagtatctttaaccagtgc 6042208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 13661897 - 13661811
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||||||||||| ||||| | ||| ||||||| |||||||||||| | || ||||| |||||||||| || |||||| |||||||||    
T  13661897 taattacacaattt-caatgcattaactactatataatttcctttttca-tatccttaaccagtgctccgggggcaccggttagcattt 13661811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 39234921 - 39234834
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||| |||||| |||||| ||||||||  ||| ||||||| |||||| || ||||| || |||| |||||||||||| |||||||||    
T  39234921 taattaaacaattgtcaatgcaataattaacatataatttccctttttattatccttaacccgtgc-cccggagcaccggttagcattt 39234834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 17534240 - 17534295
Alignment:
Q  9 attacacaattttcaatgtaataattactataaaatttccttttttagtaacctta 64  Q
    |||||||||||||||| ||||||| ||||||| ||||| | ||||||||| |||||    
T  17534240 attacacaattttcaaagtaataactactatataattttcctttttagtatcctta 17534295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 20719366 - 20719327
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaattt 46  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  20719366 taattacacaatttttaatgtaataattactatataattt 20719327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 34650930 - 34651024
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattttccaataaa 104  Q
    |||||||||||||| ||||| | ||| ||||||| |||||||||||| | || ||||| ||||||| || || |||||| ||||||||| ||||||||    
T  34650930 taattacacaattt-caatgcattaactactatataatttcctttttca-tacccttaaccagtgc-ccgggggcaccggttagcatttcccaataaa 34651024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 10054449 - 10054535
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||||||||||| ||||| | |||||| |||| |||||||||||| | || ||||| ||||||| || || |||||| |||||||||    
T  10054449 taattacacaattt-caatgcattaattattatataatttcctttttca-tacccttaaccagtgccccgggggcaccggttagcattt 10054535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 10070058 - 10069972
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||||||||||| ||||| | ||| ||||||| |||||||||||| | || ||||| ||||||| || || |||||| |||||||||    
T  10070058 taattacacaattt-caatgcattaactactatataatttcctttttca-tatccttaaccagtgccccgggggcaccggttagcattt 10069972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 14214145 - 14214233
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||| ||||||||||||| ||||||||  ||| ||||||| |||||| || ||||| || ||||  | ||||||||| ||| |||||    
T  14214145 taattaaacaattttcaatgcaataattaacatataatttccctttttattatccttaacctgtgcctcgggagcaccggttaacattt 14214233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 18160130 - 18160091
Alignment:
Q  225 gtttagcccattttgcagttttggtcccccggatcaatttt 265  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  18160130 gtttagccc-ttttgcagttttgatcccccggatcaatttt 18160091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 35132611 - 35132525
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||||||||||| ||||||| ||| ||||||| |||||||||||| | || ||||| ||||||  || || |||||| |||||||||    
T  35132611 taattacacaattt-caatgtattaactactatataatttcctttttca-tatccttaaccagtgtcccgggggcaccggttagcattt 35132525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 34228771 - 34228685
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||||||||||| ||||| | ||||||||||| |||||||||||| | || ||||| ||||||| ||||| |||||| |||||||||    
T  34228771 taattacacaattt-caatgcattaattactatataatttcctttttca-tatccttaaccagtgcccccggggcaccggttagcattt 34228685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 4811648 - 4811597
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagta 58  Q
    |||||| ||||||||||||| ||||||||||||| ||||| |||||||||||    
T  4811648 taattatacaattttcaatgcaataattactatataattttcttttttagta 4811597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 16196901 - 16196952
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagta 58  Q
    ||||||||||||||||||| |||||| || |||| ||||| |||||||||||    
T  16196901 taattacacaattttcaatataataactattatataattttcttttttagta 16196952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 22199300 - 22199233
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctc 74  Q
    |||||||| || |||||||| |||| |||||||| || |||| ||||||||||||||| ||| |||||    
T  22199300 taattacataaatttcaatgcaatagttactatataaattccatttttagtaaccttaaccaatgctc 22199233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 33124591 - 33124646
Alignment:
Q  9 attacacaattttcaatgtaataattactataaaatttccttttttagtaacctta 64  Q
    |||||||||||||||||| ||||| ||||||| || ||||||||| |||| |||||    
T  33124591 attacacaattttcaatgcaataactactatataacttcctttttaagtatcctta 33124646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 42449051 - 42449008
Alignment:
Q  11 tacacaattttcaatgtaataattactataaaatttcctttttt 54  Q
    |||||||||||||||||||||| ||||||| ||||||| |||||    
T  42449051 tacacaattttcaatgtaataactactatataatttccattttt 42449008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 33899108 - 33899154
Alignment:
Q  9 attacacaattttcaatgtaataattactataaaatttcctttttta 55  Q
    |||||||||||||||||  |||||||| |||| ||||||||||||||    
T  33899108 attacacaattttcaattcaataattattatataatttcctttttta 33899154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 42035078 - 42035185
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgc-----ttagcattttccaat 101  Q
    |||||||||||||| ||||  | ||| ||||||| |||||||||||| | || ||||| |||||||||| || |||||||     ||||||||| |||||    
T  42035078 taattacacaattt-caatacattaactactatataatttcctttttca-tatccttaaccagtgctccgggggcaccgcaccggttagcatttcccaat 42035175  T
Q  102 aaagaaagca 111  Q
    ||||||||||    
T  42035176 aaagaaagca 42035185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 29566791 - 29566703
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||| | ||||||||||| ||||||||  ||| ||||||| |||||| || ||||| || |||| || || |||||| |||||||||    
T  29566791 taattaaataattttcaatgcaataattaacatataatttccctttttattatccttaacccgtgccccgggggcaccggttagcattt 29566703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 30675669 - 30675755
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||||||||||| ||||| | ||| ||||||| |||||||||||| | || ||||| ||||||| || || |||||| |||||||||    
T  30675669 taattacacaattt-caatgcattaactactatataatttcctttttca-tacccttaaccagtgccccgggggcaccggttagcattt 30675755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 33357226 - 33357312
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcccggagcaccgcttagcattt 95  Q
    |||||||||||||| ||||| | ||| ||||||| |||||||||||| | || ||||| |||||||||| || |||||  |||||||||    
T  33357226 taattacacaattt-caatgcattaactactatataatttcctttttca-tatccttaaccagtgctccgggggcaccagttagcattt 33357312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 40268012 - 40267944
Alignment:
Q  7 taattacacaattttcaatgtaataattactataaaatttccttttttagtaaccttagccagtgctcc 75  Q
    |||||| ||||||||||||| ||||||||   || ||||||| |||||| || ||||| ||||||||||    
T  40268012 taattaaacaattttcaatgcaataattaacctataatttccctttttattatccttaaccagtgctcc 40267944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 14153 - 14197
Alignment:
Q  9 attacacaattttcaatgtaataattactataaaatttcctttttt 54  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||    
T  14153 attacacaattt-caatgtaataaatactataaaatttcctttttt 14197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 13019 - 12990
Alignment:
Q  6 ctaattacacaattttcaatgtaataatta 35  Q
    ||||||||||||||||||||||||||||||    
T  13019 ctaattacacaattttcaatgtaataatta 12990  T

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