View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117A21 (Length: 194)
Name: NF0117A21
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117A21 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 1e-98; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 7 - 188
Target Start/End: Complemental strand, 32886185 - 32886004
Alignment:
| Q |
7 |
taatttgactagctatagaagactgccacattcacttggcagggtcaaagatacgccaaatattggttggttattcaaagcttattggattctggatatc |
106 |
Q |
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| T |
32886185 |
taatttgactagctatagaagactgccacattcacttggcagggtcaaagatacgccaaatattggttggttattcaaagcttattggattctggatatc |
32886086 |
T |
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| Q |
107 |
ttcaagaacctgtaaagtatataggaaaagataaatattattagtaaattaagcagaaattattatgcatacacagataact |
188 |
Q |
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| T |
32886085 |
ttcaagaacctgtaaagtatataggaaaagataaatattattagtaaattaagcagaaattattatgcatacacagataact |
32886004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 55 - 158
Target Start/End: Complemental strand, 32899788 - 32899686
Alignment:
| Q |
55 |
agatacgccaaatattggttggttattcaaagcttattggattctggatatcttcaagaacctgtaaagtatataggaaaagataaatattattagtaaa |
154 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| | |
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| T |
32899788 |
agatacgccaaatattggttggttattcaa-gcttattggattctggatatcttcaagaacctgagaagtatataggaaaagttaaactttattagtata |
32899690 |
T |
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| Q |
155 |
ttaa |
158 |
Q |
| |
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|||| |
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| T |
32899689 |
ttaa |
32899686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 32881812 - 32881726
Alignment:
| Q |
53 |
aaagatacgccaaatattggttggttattcaaagcttattggattctgg--atatcttcaagaacctgtaaagtatataggaaaagat |
138 |
Q |
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|||||||| ||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||| ||| |||||||||||||| |
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| T |
32881812 |
aaagatacaccaaatattggttggttattc-aagcttattgtgttctggatatatcttcaagaacctgcgaagcatataggaaaagat |
32881726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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