View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117A23 (Length: 155)
Name: NF0117A23
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117A23 |
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Alignment Details
Target: chr3 (Bit Score: 77; Significance: 5e-36; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 5e-36
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 40419741 - 40419829
Alignment:
| Q |
9 |
gaaggattttatagcgagaaagtcccgaaaagcattccaaccaattaaaattgctgctgggcgcaaaacatgggt-ggtggggttctta |
96 |
Q |
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| T |
40419741 |
gaaggattttatagcgagaaagtcccgaaaagcattccaaccaattaaaattgctactgggcgcaaaacatgggtgggtggggttctta |
40419829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 149
Target Start/End: Original strand, 40420037 - 40420075
Alignment:
| Q |
111 |
actaaacagtcaaataaaactgaaatccaatggccatta |
149 |
Q |
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| T |
40420037 |
actaaacagtcaaataaaactgaaatccaatggccatta |
40420075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 39903141 - 39903091
Alignment:
| Q |
9 |
gaaggattttatagcgagaaagtcccgaaaagcattccaaccaattaaaat |
59 |
Q |
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| T |
39903141 |
gaaggattttatgacgagagagtctcgaaaagcattccaaccaattaaaat |
39903091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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