View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117A29 (Length: 245)
Name: NF0117A29
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117A29 |
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Alignment Details
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 54823082 - 54822947
Alignment:
| Q |
9 |
caaacacaaaatatcatttttatttgttnnnnnnnnnntt-gtgcctccaaatatttttcgtactaaacaaaaataaaaatgctatgaacgaacacaaga |
107 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54823082 |
caaacacaaaatatcatttttatttgttcaaaaaaaaatttgtgcctccaaatatttttcgtactaaacaaaaataaaaatgctatgaacgaacacaaga |
54822983 |
T |
|
| Q |
108 |
caactagtggtttttcaaagtgcatgagagtgaatt |
143 |
Q |
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|||| ||||||||||||||||| |||||||||||| |
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| T |
54822982 |
caaccggtggtttttcaaagtgcgtgagagtgaatt |
54822947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 54822950 - 54822881
Alignment:
| Q |
165 |
aattaagtaaacggaaatggtggaaaagatgcagagagttctggagttctatagtgaaatcggcgacatg |
234 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54822950 |
aattaagtaaacggaaatggtgaaaaagatgcagagagttctggagttctatagtgaaatcggcgacatg |
54822881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 1801399 - 1801454
Alignment:
| Q |
179 |
aaatggtggaaaagatgcagagagttctggagttctatagtgaaatcggcgacatg |
234 |
Q |
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|||||||| || |||||||||||||||| |||||||| |||| |||||||| |||| |
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| T |
1801399 |
aaatggtgaaagagatgcagagagttctcgagttctacagtggaatcggcggcatg |
1801454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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