View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117A30 (Length: 541)
Name: NF0117A30
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117A30 |
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Alignment Details
Target: chr7 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 8 - 535
Target Start/End: Original strand, 34186782 - 34187309
Alignment:
| Q |
8 |
gttctattgaagaatcacatgaattggattccatggctgtagatgaactacagagtagcttgttggtacacgagcaaagaatgaatggacataattcaca |
107 |
Q |
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| T |
34186782 |
gttctattgaagaatcacatgatttggattccatggctgtagatgaactacagagtagcttgttggtacacgagcaaagaatgaatggacataattcaca |
34186881 |
T |
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| Q |
108 |
cgaagagcaagtgctgaaagtaactcaagatgagacaagtgctggccgtagccgcggaagaggtggctttcgaggtggagctactcgaggaagaggcaga |
207 |
Q |
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| T |
34186882 |
cgaagagcaagtgctgaaagtaactcaagatgagacaagtgctggccgtagccgcggaagaggtggctttcgaggtggagctactcgaggaagaggcaaa |
34186981 |
T |
|
| Q |
208 |
ggaggtagaggaggaaaggcagcagtggagtgttattattgccatgagtttggacatttccagtatgaatgcccaaataaacccctgaacaacaccgcaa |
307 |
Q |
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| T |
34186982 |
ggaggtagaggaggaaaggcagcagtggagtgttattattgccatgagtttggacatttccagtatgaatgcccaaataaacccctgaacaacaccgcaa |
34187081 |
T |
|
| Q |
308 |
attatgctgagaccaacgaggaagcagtgctactcatggcacaactttcatcagatggagaatcaaatacacaagacatgtggttcatcgattcaggctg |
407 |
Q |
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| T |
34187082 |
attatgttgagaccaacgaggaagcaatgctactcatggcacaactttcatcagatggagaatcaaatacacaagacatgtggttcatcgattcaggctg |
34187181 |
T |
|
| Q |
408 |
tagcaaccatatgacaggtagaaaggactggttttcttcacttgatgcttctttttgtgatgaggtaaaattaggaaataattatgctcttaaggtcaat |
507 |
Q |
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| T |
34187182 |
cagcaaccatatgacaggtagaaaggactggttttcttcacttgatgcttctttttgtgatgaggtaaaattaggaaataattatgctcttaaggtcaat |
34187281 |
T |
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| Q |
508 |
gggaagggtgttgtcaaacttttgatta |
535 |
Q |
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| T |
34187282 |
gggaagggtgttgtcaaacttttgatta |
34187309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 366998 - 366899
Alignment:
| Q |
8 |
gttctattgaagaatcacatgaattggattccatggctgtagatgaactacagagtagcttgttggtacacgagcaaagaatgaatggacataattcaca |
107 |
Q |
| |
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||||||||||| |||| ||||| || ||||||||| || ||||||||| | ||||||| |||||||||||| ||| ||||||||| || |||||||| |
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| T |
366998 |
gttctattgaataatctcatgatttagattccatgaatgcagatgaactccgaagtagctcgttggtacacgaacaacgaatgaatgaccacaattcaca |
366899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 518664 - 518763
Alignment:
| Q |
8 |
gttctattgaagaatcacatgaattggattccatggctgtagatgaactacagagtagcttgttggtacacgagcaaagaatgaatggacataattcaca |
107 |
Q |
| |
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||||||||||| |||| ||||| | ||||||||| || ||||||||| | ||||||| |||||||||||| ||| ||||||||| || |||||||| |
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| T |
518664 |
gttctattgaataatctcatgatctagattccatgaatgcagatgaactccgaagtagctcgttggtacacgaacaacgaatgaatgaccacaattcaca |
518763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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