View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117A4 (Length: 704)
Name: NF0117A4
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117A4 |
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Alignment Details
Target: chr4 (Bit Score: 607; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 10 - 677
Target Start/End: Original strand, 55867662 - 55868331
Alignment:
| Q |
10 |
gagtagtgtccatgcttcttcatagtcctctactaaaatgattgttttgaaatccttatatataattatgtttcaattttcactaagatatcatacaaga |
109 |
Q |
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| T |
55867662 |
gagtagtgtccatgcttcttcacagtcctctactaaaatgattgttttgaaatccttatatataagtatgtttcaattttcactaagatatcatacaaga |
55867761 |
T |
|
| Q |
110 |
aattaccttgtcagacttgaaaatatgtacagatcatatctttcacattgctatatttgatctccgcatcatctcatgaacagtgaacaatccttgtttg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
55867762 |
aattaccttgtcagacttgaaaatatgtacagatcatatctttcacattgctatatttgatctctgcatcatctcatgaacagtgaacaatccttgtttc |
55867861 |
T |
|
| Q |
210 |
gttgatgcattgtctatctaatgttatttaccttcatgtctagcaaaactaactcactgacaatgaatttgatagatacgtgcaagcaaaataaacaatt |
309 |
Q |
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| T |
55867862 |
gttgatgcattgtctatctaatgttatttaccttcatgtctagcaaaactaactcactgacaatgaatttgatagatacgtgcaagcaaaataaacaatt |
55867961 |
T |
|
| Q |
310 |
aaattcagagagaaagcaaataagaacttacatttaggtgattgattatcagggatacagcaagagtaactattggtctttcccatgtgaagatttcttg |
409 |
Q |
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| T |
55867962 |
aaattcagagagaaagcaaataagaacttacatttaggtgattgattatcagggatacagcaagagtaactattggtctttcccatgtgaagatttcttg |
55868061 |
T |
|
| Q |
410 |
taaccaagggccacatttttaactggctttagtatttcctatacaataaaatcaattttctgtgttttaccacatcaatttgctggtaattaaagatatt |
509 |
Q |
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| T |
55868062 |
taaccaagggccacatttttaagtggctttagtatttcctatacaataaaatcaattttctgtgttttaccacatcaatttgctggtaattaaagatatt |
55868161 |
T |
|
| Q |
510 |
cgtgtggatcaactgatatacttaacaaatgtaatgattcattatcagatttatgtctctaacctatttatttgccatccagttcaatcgaagttaacca |
609 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
55868162 |
cgtgtggatcagctgatatacttaacaaatgtaatgattcattatcagatttatgtctctaacctatttatttgccatccagctcaatcgcagttaacca |
55868261 |
T |
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| Q |
610 |
attgaaccatgaaccgaangtg-ccccagtttgacctccgaccagactttt-aaacattcctttttcttt |
677 |
Q |
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| T |
55868262 |
attgaaccatgaaccgaatgtgtcaccagtttgatctccggccagacttttaaaacattcctttttcttt |
55868331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 275 - 320
Target Start/End: Original strand, 55810361 - 55810406
Alignment:
| Q |
275 |
aatttgatagatacgtgcaagcaaaataaacaattaaattcagaga |
320 |
Q |
| |
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|||||||||||||| | |||||||||||||||||||||| ||||| |
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| T |
55810361 |
aatttgatagatacatataagcaaaataaacaattaaatttagaga |
55810406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 366 - 463
Target Start/End: Original strand, 33501171 - 33501269
Alignment:
| Q |
366 |
acagcaagagtaactattggtctttcccatgtgaagatttcttgtaaccaaggg-ccacatttttaactggctttagtatttcctatacaataaaatca |
463 |
Q |
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||||||| |||||| |||||| |||||||| ||||||||||||||||||||||| |||||||||| | |||| |||||| ||||| ||||||||||||| |
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| T |
33501171 |
acagcaatagtaaccattggtttttcccatttgaagatttcttgtaaccaagggaccacatttttgagtggcgttagtagttcctgtacaataaaatca |
33501269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 113 - 207
Target Start/End: Original strand, 33500745 - 33500839
Alignment:
| Q |
113 |
taccttgtcagacttgaaaatatgtacagatcatatctttcacattgctatatttgatctccgcatcatctcatgaacagtgaacaatccttgtt |
207 |
Q |
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||||||||||| |||| ||||| ||| ||| ||||||||| |||||||||| |||| | || ||||||||||||| |||||| ||||||| |||| |
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| T |
33500745 |
taccttgtcagccttggaaataagtatagaccatatctttaacattgctatgtttgctatctgcatcatctcatgtacagtgtacaatccatgtt |
33500839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 275 - 352
Target Start/End: Original strand, 33501077 - 33501152
Alignment:
| Q |
275 |
aatttgatagatacgtgcaagcaaaataaacaattaaattcagagagaaagcaaataagaacttacatttaggtgatt |
352 |
Q |
| |
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|||||||||||||| | |||||||||||| ||||| || |||||| ||| ||||||||||||||| ||||||||| |
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| T |
33501077 |
aatttgatagatacatataagcaaaataaaaaattatat--agagagtaagagaataagaacttacatataggtgatt |
33501152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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