View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117A5 (Length: 563)
Name: NF0117A5
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117A5 |
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Alignment Details
Target: chr5 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 12 - 557
Target Start/End: Complemental strand, 2353273 - 2352732
Alignment:
| Q |
12 |
caccacacaaatatctgagtttatgtagtaataacctccatataggtgatatatacattcaataccatccatgaacgcagttgtacacctcatcctgcat |
111 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2353273 |
caccacacaaatatctcagtttatgtagtaataacctccatataggtgatatatacattcaataccatccatgaacgcagttgtacacctcatcctgcat |
2353174 |
T |
|
| Q |
112 |
gcatggaccatgatccacacacttagcaaacatgctttttacaatctcgacacatacgtctttttctttgttcattgagacaaatctatgcaatctctca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2353173 |
gcatggaccatgatccacacacttagcaaacatgctttttacaatctcgacacatacgtctttttctttgttcattgagacaaatctatgcaatctctca |
2353074 |
T |
|
| Q |
212 |
ttgcaaaacatatgttttacaccacagattaaagtcatcatgtgcaaagttatgatagttaatgatcctattgtggcatgtctacatcagtgccacattt |
311 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2353073 |
ttgcaaaacatatgttttacaccacagattaaagtcatcatgtgcaaagttatgatagttaatgatcctattgtggcatgtctacatcggtgccacattt |
2352974 |
T |
|
| Q |
312 |
gatatgtaatgtcactttcttgtagatcgaggatgggatgtttgatatattctgagaaaaaaccctggcctgcataattgtcttatctacaatacaacta |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2352973 |
gatatgtaatgtcactttcttgtagatcgaggatgggatgtttgatatattctgagaaaaaaccctggcctgcataattgtcttatctacaatacaacta |
2352874 |
T |
|
| Q |
412 |
agatcttttaaactctaacgtataatcaaacccacttggtgcttactacttaagcagtgttggnnnnnnnnnnnnnnnacagtattcacattctcaacca |
511 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2352873 |
agattttttaaactctaacgtataatcaaacccacttggtgcttactacttaagcagtgttgg----tttttttttttacagtattcacattctcaacca |
2352778 |
T |
|
| Q |
512 |
gatttggtcccctacactgtatctattaaaattgatgccttaatta |
557 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2352777 |
gatttggtcccctacactgtatctattaaaattgatgccttaatta |
2352732 |
T |
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