View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0117A6 (Length: 605)

Name: NF0117A6
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0117A6
NF0117A6
[»] chr8 (14 HSPs)
chr8 (34-300)||(6197351-6197615)
chr8 (417-599)||(6197732-6197914)
chr8 (506-570)||(6197907-6197971)
chr8 (503-588)||(11322625-11322709)
chr8 (518-587)||(27938998-27939067)
chr8 (510-585)||(14381237-14381312)
chr8 (510-585)||(40098826-40098901)
chr8 (515-573)||(43140626-43140683)
chr8 (528-577)||(158444-158493)
chr8 (506-575)||(13325167-13325236)
chr8 (542-578)||(325243-325279)
chr8 (505-585)||(9056087-9056167)
chr8 (517-585)||(27502967-27503035)
chr8 (515-579)||(43140550-43140614)
[»] chr6 (17 HSPs)
chr6 (506-587)||(14589538-14589619)
chr6 (513-587)||(14623203-14623277)
chr6 (517-587)||(33123017-33123087)
chr6 (525-585)||(14093095-14093155)
chr6 (521-587)||(26388201-26388267)
chr6 (504-599)||(26388243-26388338)
chr6 (525-587)||(3989524-3989586)
chr6 (532-582)||(29938684-29938734)
chr6 (506-571)||(7632850-7632915)
chr6 (504-587)||(7632763-7632846)
chr6 (506-560)||(16121056-16121110)
chr6 (506-560)||(32124215-32124269)
chr6 (522-595)||(10405062-10405134)
chr6 (516-585)||(17773506-17773575)
chr6 (510-555)||(21506462-21506507)
chr6 (522-575)||(29938627-29938679)
chr6 (505-581)||(23767929-23768005)
[»] chr4 (27 HSPs)
chr4 (508-587)||(22768141-22768220)
chr4 (517-587)||(22720512-22720582)
chr4 (505-570)||(22720587-22720652)
chr4 (506-570)||(2198043-2198107)
chr4 (505-573)||(22923653-22923721)
chr4 (505-573)||(22928306-22928374)
chr4 (505-573)||(22984585-22984653)
chr4 (505-573)||(22998173-22998241)
chr4 (506-586)||(52673593-52673673)
chr4 (516-583)||(49083105-49083172)
chr4 (513-571)||(52673678-52673736)
chr4 (506-594)||(4641470-4641558)
chr4 (543-599)||(15794796-15794852)
chr4 (539-587)||(41622161-41622209)
chr4 (506-573)||(22923694-22923761)
chr4 (506-573)||(22928347-22928414)
chr4 (506-573)||(22984626-22984693)
chr4 (506-573)||(22998214-22998281)
chr4 (505-585)||(44626156-44626236)
chr4 (516-575)||(49083047-49083105)
chr4 (510-560)||(19934637-19934687)
chr4 (505-567)||(22768228-22768290)
chr4 (510-560)||(54164812-54164862)
chr4 (506-575)||(52299073-52299141)
chr4 (510-555)||(52817663-52817708)
chr4 (543-599)||(35151713-35151769)
chr4 (506-570)||(38562121-38562185)
[»] chr5 (16 HSPs)
chr5 (509-588)||(26221022-26221101)
chr5 (521-587)||(21032596-21032662)
chr5 (504-570)||(21032525-21032591)
chr5 (506-575)||(5240221-5240290)
chr5 (506-575)||(42364296-42364365)
chr5 (513-599)||(29486500-29486586)
chr5 (510-585)||(23914840-23914915)
chr5 (515-585)||(13157337-13157407)
chr5 (515-585)||(42364224-42364294)
chr5 (505-587)||(12959938-12960022)
chr5 (522-570)||(892562-892610)
chr5 (525-585)||(3851377-3851437)
chr5 (505-573)||(14751203-14751271)
chr5 (515-555)||(15712125-15712165)
chr5 (506-570)||(18261595-18261659)
chr5 (515-555)||(35969132-35969172)
[»] chr3 (13 HSPs)
chr3 (513-587)||(35239717-35239791)
chr3 (513-586)||(50334923-50334996)
chr3 (510-557)||(38455164-38455211)
chr3 (503-585)||(32186881-32186963)
chr3 (506-583)||(39964290-39964367)
chr3 (542-593)||(30082252-30082303)
chr3 (522-557)||(42912352-42912387)
chr3 (510-557)||(52168377-52168424)
chr3 (506-555)||(39579589-39579638)
chr3 (510-555)||(51617427-51617472)
chr3 (503-555)||(12744997-12745049)
chr3 (525-585)||(50260947-50261007)
chr3 (518-570)||(53711868-53711920)
[»] chr2 (14 HSPs)
chr2 (506-587)||(8996817-8996898)
chr2 (515-573)||(10495722-10495780)
chr2 (506-566)||(43100744-43100804)
chr2 (542-585)||(8717540-8717583)
chr2 (504-577)||(8996716-8996789)
chr2 (552-599)||(39792136-39792183)
chr2 (506-548)||(23143481-23143523)
chr2 (506-548)||(23555271-23555313)
chr2 (417-458)||(2908794-2908834)
chr2 (524-573)||(10495701-10495749)
chr2 (537-582)||(41540684-41540729)
chr2 (542-598)||(13953797-13953853)
chr2 (542-598)||(14095004-14095060)
chr2 (510-550)||(38227198-38227238)
[»] chr1 (21 HSPs)
chr1 (506-599)||(8352130-8352223)
chr1 (503-587)||(26468286-26468370)
chr1 (512-573)||(43731197-43731258)
chr1 (506-577)||(1409044-1409116)
chr1 (517-570)||(8352216-8352269)
chr1 (522-587)||(14773787-14773852)
chr1 (510-555)||(31008355-31008400)
chr1 (505-585)||(639793-639873)
chr1 (503-555)||(3384215-3384267)
chr1 (510-585)||(33604057-33604132)
chr1 (510-585)||(48022594-48022669)
chr1 (506-571)||(5368854-5368919)
chr1 (510-555)||(14418153-14418198)
chr1 (510-555)||(17490487-17490532)
chr1 (518-571)||(30800289-30800342)
chr1 (510-555)||(37734869-37734914)
chr1 (524-572)||(1609977-1610025)
chr1 (525-585)||(27206773-27206833)
chr1 (504-548)||(29043447-29043491)
chr1 (525-577)||(31635819-31635871)
chr1 (515-587)||(42761457-42761529)
[»] chr7 (14 HSPs)
chr7 (506-570)||(26982759-26982823)
chr7 (506-599)||(4132381-4132475)
chr7 (504-575)||(21857062-21857133)
chr7 (516-577)||(4132461-4132522)
chr7 (515-573)||(21587839-21587897)
chr7 (506-560)||(34840609-34840663)
chr7 (517-587)||(41115556-41115626)
chr7 (517-570)||(43250420-43250473)
chr7 (506-573)||(24155635-24155702)
chr7 (509-587)||(38646164-38646242)
chr7 (515-575)||(21857162-21857222)
chr7 (515-555)||(29498879-29498919)
chr7 (516-560)||(43250374-43250418)
chr7 (505-585)||(45000667-45000747)
[»] scaffold0155 (1 HSPs)
scaffold0155 (506-556)||(33970-34020)


Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 34 - 300
Target Start/End: Original strand, 6197351 - 6197615
Alignment:
Q  34 cccttgcttagacgctgcttttctctattgaaagttgtttgggttgaaaatgtgactattatgtgttccttcatcttcctccattacccttaattcttta 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6197351 cccttgcttagacgctgcttttctctattgaaagttgtttgggttgaaaatgtgactattatgtgttccttcatcttcctccattacccttaattcttta 6197450  T
Q  134 ataacaactcaactttttataataagtccattatatggtgtacaagtgagacatgttttgcatcttgcacaaatcgatatctaccactggatcaataagt 233  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6197451 ataacaactcaactttttataataagtccattctatggtgtacaagtgagacatgttttgcatcttgcacaaatcgatatctaccattggatcaataagt 6197550  T
Q  234 caccattgaatcattctttgtgtcatgcacaaattgatttctacaaatttaagtataataatgtatt 300  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6197551 caccattgaatcattc--tgtgtcatgcacaaattgatttctacaaatttaagtataataatgtatt 6197615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 417 - 599
Target Start/End: Original strand, 6197732 - 6197914
Alignment:
Q  417 gaattgagaatatcctcaaaaatactcttccatttccaaacttcaacaaggtgtaagttaacagctaacactttaactaaaaactcaagtactcccttcg 516  Q
    |||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
T  6197732 gaattgagaatatcctcaaaaatactcttccacttccaaactttaataaggtgtaagttaacaactaacactttaactaaaaactcaagtactccctccg 6197831  T
Q  517 gtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattatagattaaatatatta 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  6197832 gtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttatcatagattaaatacatta 6197914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 506 - 570
Target Start/End: Complemental strand, 6197971 - 6197907
Alignment:
Q  506 tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtat 570  Q
    |||||| | |||||| ||||||||||||||||  ||||||||||||||||||||| |||||||||    
T  6197971 tactccatccggtcactattataagcaaaactttactttttagatacattaaataattaatgtat 6197907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 503 - 588
Target Start/End: Complemental strand, 11322709 - 11322625
Alignment:
Q  503 aagtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattatagat 588  Q
    ||||||||||| || ||| |||||||||||||||| || |||||||||| ||| |||| ||||| |||| | ||||||||||||||    
T  11322709 aagtactccctccgatcactattataagcaaaact-caatttttagatatattgaataattaatatatccaatctttattatagat 11322625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 518 - 587
Target Start/End: Original strand, 27938998 - 27939067
Alignment:
Q  518 tcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga 587  Q
    ||||||| ||||| ||||||||||||| ||  | |||| |||| | ||||||||||||||||||||||||    
T  27938998 tcattatcataagtaaaactccactttataagtgcattgaataatcaatgtatctagtctttattataga 27939067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 585
Target Start/End: Original strand, 14381237 - 14381312
Alignment:
Q  510 cccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata 585  Q
    |||| |||||| || ||||||||||| ||||||||||||||||||| |||   | |||||| | ||||||||||||    
T  14381237 ccctccggtcactaatataagcaaaaatccactttttagatacattcaattaatgatgtatgtggtctttattata 14381312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 585
Target Start/End: Complemental strand, 40098901 - 40098826
Alignment:
Q  510 cccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata 585  Q
    |||| |||||| || ||||||||||| ||||||||||||||||||| |||   | |||||| | ||||||||||||    
T  40098901 ccctccggtcactaatataagcaaaaatccactttttagatacattcaattaatgatgtatgtggtctttattata 40098826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 573
Target Start/End: Complemental strand, 43140683 - 43140626
Alignment:
Q  515 cggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatcta 573  Q
    ||||||||||||||| ||||||| || ||||||||||| || |||| ||||||||||||    
T  43140683 cggtcattattataaacaaaacttcattttttagatac-ttgaataattaatgtatcta 43140626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 528 - 577
Target Start/End: Original strand, 158444 - 158493
Alignment:
Q  528 aagcaaaactccactttttagatacattaaatagttaatgtatctagtct 577  Q
    |||||||| | ||||||||||||||||| |||| ||||||||| ||||||    
T  158444 aagcaaaatttcactttttagatacattgaataattaatgtatgtagtct 158493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 575
Target Start/End: Complemental strand, 13325236 - 13325167
Alignment:
Q  506 tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagt 575  Q
    |||||||| | |||||||||||||| |||||| |||||||||| || ||| |||| | ||||||| ||||    
T  13325236 tactccctcctgtcattattataaggaaaacttcactttttaggtatattgaataatcaatgtatttagt 13325167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 542 - 578
Target Start/End: Original strand, 325243 - 325279
Alignment:
Q  542 tttttagatacattaaatagttaatgtatctagtctt 578  Q
    |||||||||||||| |||| |||||||||||||||||    
T  325243 tttttagatacatttaataattaatgtatctagtctt 325279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 505 - 585
Target Start/End: Complemental strand, 9056167 - 9056087
Alignment:
Q  505 gtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata 585  Q
    |||| |||| |||||| || ||||||||||| | ||||||||||||||||| |||   | |||||| | ||||||||||||    
T  9056167 gtacaccctccggtcactaatataagcaaaaattcactttttagatacatttaattaatgatgtatgtggtctttattata 9056087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 517 - 585
Target Start/End: Complemental strand, 27503035 - 27502967
Alignment:
Q  517 gtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata 585  Q
    ||||||||||||||||||| || || ||||||||||||| |  |  |||| ||| ||||||||||||||    
T  27503035 gtcattattataagcaaaaatcaacattttagatacattcataaaataatatatgtagtctttattata 27502967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 579
Target Start/End: Original strand, 43140550 - 43140614
Alignment:
Q  515 cggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtcttt 579  Q
    |||||| |||||||| ||||||   |||| ||||||||||| |||| |||||||||||| |||||    
T  43140550 cggtcactattataaacaaaacattacttattagatacattgaataattaatgtatctaatcttt 43140614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 506 - 587
Target Start/End: Original strand, 14589538 - 14589619
Alignment:
Q  506 tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga 587  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||||||||| |||| || |||||||||||||||||||||||    
T  14589538 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttattataga 14589619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 513 - 587
Target Start/End: Original strand, 14623203 - 14623277
Alignment:
Q  513 ttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga 587  Q
    ||||||||||||||||||||||||| ||||||| ||||||||| |||| || ||||||||| |||||||||||||    
T  14623203 ttcggtcattattataagcaaaacttcacttttcagatacattgaataattcatgtatctaatctttattataga 14623277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 517 - 587
Target Start/End: Original strand, 33123017 - 33123087
Alignment:
Q  517 gtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga 587  Q
    ||||||||||||| ||||||| ||||||||| ||||||| |||| |||||||||||||||||| |||||||    
T  33123017 gtcattattataaacaaaacttcactttttaaatacattgaataattaatgtatctagtcttttttataga 33123087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 525 - 585
Target Start/End: Original strand, 14093095 - 14093155
Alignment:
Q  525 tataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata 585  Q
    |||||| ||||||| |||||||| |||||||||||| ||||||||||||||||||||||||    
T  14093095 tataagaaaaactcaactttttaaatacattaaataattaatgtatctagtctttattata 14093155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 521 - 587
Target Start/End: Original strand, 26388201 - 26388267
Alignment:
Q  521 ttattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga 587  Q
    ||||||||| |||||||| |||||||||||| ||| |||| |||||||||||| |||||||||||||    
T  26388201 ttattataaacaaaactctactttttagatatattgaataattaatgtatctaatctttattataga 26388267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 504 - 599
Target Start/End: Complemental strand, 26388338 - 26388243
Alignment:
Q  504 agtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattatagattaaatatatta 599  Q
    |||||||||| |||||| ||||||||| |||||||||||||||| ||| ||| |||| |||||||||  ||||| || || |||||| ||| ||||    
T  26388338 agtactccctccggtcactattataagaaaaactccactttttatatatattgaataattaatgtattcagtctataataaagattagatacatta 26388243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 525 - 587
Target Start/End: Original strand, 3989524 - 3989586
Alignment:
Q  525 tataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga 587  Q
    ||||||||||||| ||||||||| |||||| ||||| | ||||| ||||||||||||||||||    
T  3989524 tataagcaaaacttcactttttaaatacataaaataatcaatgtttctagtctttattataga 3989586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 532 - 582
Target Start/End: Complemental strand, 29938734 - 29938684
Alignment:
Q  532 aaaactccactttttagatacattaaatagttaatgtatctagtctttatt 582  Q
    ||||||| |||||||||||||||| |||| |||||||||||||||||||||    
T  29938734 aaaactctactttttagatacattgaataattaatgtatctagtctttatt 29938684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 506 - 571
Target Start/End: Complemental strand, 7632915 - 7632850
Alignment:
Q  506 tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatc 571  Q
    |||||||| ||||||||||||||| |||||||  |||||||||||||| | |||| ||||||||||    
T  7632915 tactccctccggtcattattataaacaaaacttaactttttagatacactgaataattaatgtatc 7632850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 504 - 587
Target Start/End: Original strand, 7632763 - 7632846
Alignment:
Q  504 agtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga 587  Q
    |||||||| | || ||| |||||||| ||||||| |||||| ||  |||||| |||| | ||||||||||||||||||||||||    
T  7632763 agtactccatccgatcactattataaacaaaacttcactttctaactacattcaataatcaatgtatctagtctttattataga 7632846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 560
Target Start/End: Complemental strand, 16121110 - 16121056
Alignment:
Q  506 tactcccttcggtcattattataagcaaaactccactttttagatacattaaata 560  Q
    |||||||| || ||| |||||||||||||| || ||||||||||| |||||||||    
T  16121110 tactccctccgatcactattataagcaaaaatcaactttttagattcattaaata 16121056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 560
Target Start/End: Complemental strand, 32124269 - 32124215
Alignment:
Q  506 tactcccttcggtcattattataagcaaaactccactttttagatacattaaata 560  Q
    ||||| |||||||||||||||||||||||| |  ||||||||||| |||| ||||    
T  32124269 tactctcttcggtcattattataagcaaaaattgactttttagattcattcaata 32124215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 595
Target Start/End: Original strand, 10405062 - 10405134
Alignment:
Q  522 tattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattatagattaaatat 595  Q
    ||||||||  |||||| || |||||| |||||||||||| ||||||||| ||||||||||| | ||||| ||||    
T  10405062 tattataaataaaacttcattttttaaatacattaaataattaatgtat-tagtctttatttttgattagatat 10405134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 516 - 585
Target Start/End: Original strand, 17773506 - 17773575
Alignment:
Q  516 ggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata 585  Q
    ||||| || ||||| ||||| ||||||||||||||||||| ||||  | |||||| | ||||||||||||    
T  17773506 ggtcactaatataaacaaaaatccactttttagatacattcaataaatgatgtatgtggtctttattata 17773575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 21506462 - 21506507
Alignment:
Q  510 cccttcggtcattattataagcaaaactccactttttagatacatt 555  Q
    |||| |||||| || ||||||||||| |||||||||||||||||||    
T  21506462 ccctccggtcactaatataagcaaaaatccactttttagatacatt 21506507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 575
Target Start/End: Original strand, 29938627 - 29938679
Alignment:
Q  522 tattataagcaaaactccactttttagatacattaaatagttaatgtatctagt 575  Q
    ||||||||| |||| | ||||||||||||||||| |||| ||||||||||||||    
T  29938627 tattataagtaaaatttcactttttagatacatt-aataattaatgtatctagt 29938679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 505 - 581
Target Start/End: Original strand, 23767929 - 23768005
Alignment:
Q  505 gtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttat 581  Q
    |||||| || || ||| ||||||||| |||| | || ||||| ||||||||||||| ||||||| |||||| |||||    
T  23767929 gtactctctccgatcaatattataagtaaaatttcagtttttcgatacattaaataattaatgtttctagtgtttat 23768005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 7e-23; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 508 - 587
Target Start/End: Original strand, 22768141 - 22768220
Alignment:
Q  508 ctcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga 587  Q
    |||||| |||||| |||||||||||||||||||  ||||||||||||| |||| ||||||||||||||||||||||||||    
T  22768141 ctccctccggtcactattataagcaaaactccatattttagatacattgaataattaatgtatctagtctttattataga 22768220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 517 - 587
Target Start/End: Original strand, 22720512 - 22720582
Alignment:
Q  517 gtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga 587  Q
    |||| |||||||| ||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  22720512 gtcactattataaacaaaattccactttttagatacattgaataattaatgtatctagtctttattataga 22720582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 505 - 570
Target Start/End: Complemental strand, 22720652 - 22720587
Alignment:
Q  505 gtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtat 570  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||| |||| |||||||||    
T  22720652 gtactccctccggtcactattataagcaaaactccactttttagatacattgaataattaatgtat 22720587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 506 - 570
Target Start/End: Original strand, 2198043 - 2198107
Alignment:
Q  506 tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtat 570  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||| |||| |||||||||    
T  2198043 tactccctccggtcactattataagcaaaactccactttttagatacattgaataattaatgtat 2198107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 505 - 573
Target Start/End: Original strand, 22923653 - 22923721
Alignment:
Q  505 gtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatcta 573  Q
    ||||||||| |||||| ||||||||||||||||||| |||||||||||||| |||| ||||||||||||    
T  22923653 gtactccctccggtcactattataagcaaaactccaatttttagatacattgaataattaatgtatcta 22923721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 505 - 573
Target Start/End: Original strand, 22928306 - 22928374
Alignment:
Q  505 gtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatcta 573  Q
    ||||||||| |||||| ||||||||||||||||||| |||||||||||||| |||| ||||||||||||    
T  22928306 gtactccctccggtcactattataagcaaaactccaatttttagatacattgaataattaatgtatcta 22928374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 505 - 573
Target Start/End: Original strand, 22984585 - 22984653
Alignment:
Q  505 gtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatcta 573  Q
    ||||||||| |||||| ||||||||||||||||||| |||||||||||||| |||| ||||||||||||    
T  22984585 gtactccctccggtcactattataagcaaaactccaatttttagatacattgaataattaatgtatcta 22984653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 505 - 573
Target Start/End: Original strand, 22998173 - 22998241
Alignment:
Q  505 gtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatcta 573  Q
    ||||||||| |||||| ||||||||||||||||||| |||||||||||||| |||| ||||||||||||    
T  22998173 gtactccctccggtcactattataagcaaaactccaatttttagatacattgaataattaatgtatcta 22998241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 506 - 586
Target Start/End: Original strand, 52673593 - 52673673
Alignment:
Q  506 tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattatag 586  Q
    |||||||| | |||| ||||||||||||||||  |||||||||||| ||| |||| |||||||||||||| ||||||||||    
T  52673593 tactccctcccgtcactattataagcaaaactttactttttagatatattgaataattaatgtatctagtttttattatag 52673673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 516 - 583
Target Start/End: Complemental strand, 49083172 - 49083105
Alignment:
Q  516 ggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttatta 583  Q
    ||||| |||||||||||||| | ||| |||||||||||||||||| |||||||| ||| |||||||||    
T  49083172 ggtcactattataagcaaaatttcacattttagatacattaaataattaatgtaactaatctttatta 49083105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 513 - 571
Target Start/End: Complemental strand, 52673736 - 52673678
Alignment:
Q  513 ttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatc 571  Q
    |||||||| |||||||||||||| | ||||||||||||||||| |||| ||||||||||    
T  52673736 ttcggtcactattataagcaaaatttcactttttagatacattgaataattaatgtatc 52673678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 506 - 594
Target Start/End: Original strand, 4641470 - 4641558
Alignment:
Q  506 tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattatagattaaata 594  Q
    ||||| |||| ||||||||||||||||||| |  ||| |||| ||  ||  |||||||||| |||||||||||||||||||| ||||||    
T  4641470 tactctcttctgtcattattataagcaaaattttactctttacatgtatagaatagttaatctatctagtctttattatagactaaata 4641558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 543 - 599
Target Start/End: Original strand, 15794796 - 15794852
Alignment:
Q  543 ttttagatacattaaatagttaatgtatctagtctttattatagattaaatatatta 599  Q
    ||||||||||||| |||| ||||||||||| |||||||||||||| |||||| ||||    
T  15794796 ttttagatacattgaataattaatgtatctggtctttattatagactaaatacatta 15794852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 539 - 587
Target Start/End: Complemental strand, 41622209 - 41622161
Alignment:
Q  539 cactttttagatacattaaatagttaatgtatctagtctttattataga 587  Q
    ||||||||||||||||| |||  ||||||||||||||||||||||||||    
T  41622209 cactttttagatacattgaatgattaatgtatctagtctttattataga 41622161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 506 - 573
Target Start/End: Complemental strand, 22923761 - 22923694
Alignment:
Q  506 tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatcta 573  Q
    |||||||| |||||| |||||||| ||||| |||| |||||||||||||||| || | ||||||||||    
T  22923761 tactccctccggtcactattataaacaaaattccattttttagatacattaattattcaatgtatcta 22923694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 506 - 573
Target Start/End: Complemental strand, 22928414 - 22928347
Alignment:
Q  506 tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatcta 573  Q
    |||||||| |||||| |||||||| ||||| |||| |||||||||||||||| || | ||||||||||    
T  22928414 tactccctccggtcactattataaacaaaattccattttttagatacattaattattcaatgtatcta 22928347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 506 - 573
Target Start/End: Complemental strand, 22984693 - 22984626
Alignment:
Q  506 tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatcta 573  Q
    |||||||| |||||| |||||||| ||||| |||| |||||||||||||||| || | ||||||||||    
T  22984693 tactccctccggtcactattataaacaaaattccattttttagatacattaattattcaatgtatcta 22984626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 506 - 573
Target Start/End: Complemental strand, 22998281 - 22998214
Alignment:
Q  506 tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatcta 573  Q
    |||||||| |||||| |||||||| ||||| |||| |||||||||||||||| || | ||||||||||    
T  22998281 tactccctccggtcactattataaacaaaattccattttttagatacattaattattcaatgtatcta 22998214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 505 - 585
Target Start/End: Original strand, 44626156 - 44626236
Alignment:
Q  505 gtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata 585  Q
    ||||||||| |||||| |||||||| ||||| |  | |||| ||||||||| ||||  ||||||||||||||| |||||||    
T  44626156 gtactccctccggtcactattataatcaaaattttatttttcagatacattgaataactaatgtatctagtctatattata 44626236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 516 - 575
Target Start/End: Original strand, 49083047 - 49083105
Alignment:
Q  516 ggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagt 575  Q
    ||||| |||||||||||||||| || ||||||||| |||| |||| ||||||||||||||    
T  49083047 ggtcactattataagcaaaacttca-tttttagatgcattgaataattaatgtatctagt 49083105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 510 - 560
Target Start/End: Original strand, 19934637 - 19934687
Alignment:
Q  510 cccttcggtcattattataagcaaaactccactttttagatacattaaata 560  Q
    |||| |||||| |||||||||||||| |||||||||||||| |||| ||||    
T  19934637 ccctccggtcactattataagcaaaattccactttttagattcattcaata 19934687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 505 - 567
Target Start/End: Complemental strand, 22768290 - 22768228
Alignment:
Q  505 gtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatg 567  Q
    ||||||||| |||||| || ||||| ||| ||| ||||||||||||||||| |||| ||||||    
T  22768290 gtactccctccggtcactactataaacaacactacactttttagatacattgaataattaatg 22768228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 510 - 560
Target Start/End: Original strand, 54164812 - 54164862
Alignment:
Q  510 cccttcggtcattattataagcaaaactccactttttagatacattaaata 560  Q
    |||| |||||| |||||||||||||| |||||||||||||| |||| ||||    
T  54164812 ccctccggtcactattataagcaaaattccactttttagattcattcaata 54164862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 575
Target Start/End: Original strand, 52299073 - 52299141
Alignment:
Q  506 tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagt 575  Q
    ||||| |||| ||||||||||||||||||| |  |||||||| ||||||| |||| ||||||||| ||||    
T  52299073 tactctcttccgtcattattataagcaaaattttacttttta-atacattgaataattaatgtatttagt 52299141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 52817708 - 52817663
Alignment:
Q  510 cccttcggtcattattataagcaaaactccactttttagatacatt 555  Q
    |||| |||||| || ||||||||||| |||||||||||||||||||    
T  52817708 ccctccggtcactaatataagcaaaaatccactttttagatacatt 52817663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 543 - 599
Target Start/End: Complemental strand, 35151769 - 35151713
Alignment:
Q  543 ttttagatacattaaatagttaatgtatctagtctttattatagattaaatatatta 599  Q
    |||||||| |||| ||| | | |||||| ||||||||||||||||||| ||||||||    
T  35151769 ttttagattcattcaattgatgatgtatatagtctttattatagattatatatatta 35151713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 506 - 570
Target Start/End: Original strand, 38562121 - 38562185
Alignment:
Q  506 tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtat 570  Q
    |||||||||||||||   ||||||||||||  | |||| ||||||||||| |||| |||||||||    
T  38562121 tactcccttcggtcacatttataagcaaaaaacaacttgttagatacattgaataattaatgtat 38562185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 509 - 588
Target Start/End: Original strand, 26221022 - 26221101
Alignment:
Q  509 tcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattatagat 588  Q
    ||||| |||||| |||||||| |||||||  |||||||||||||||| |||| |||||||||||||| ||||||||||||    
T  26221022 tccctccggtcaatattataaacaaaactttactttttagatacattgaataattaatgtatctagtttttattatagat 26221101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 521 - 587
Target Start/End: Complemental strand, 21032662 - 21032596
Alignment:
Q  521 ttattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga 587  Q
    ||||||||| ||||| || |||||||||||| ||| |||| ||||||||||||||||||||||||||    
T  21032662 ttattataaacaaaattctactttttagatatattgaataattaatgtatctagtctttattataga 21032596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 504 - 570
Target Start/End: Original strand, 21032525 - 21032591
Alignment:
Q  504 agtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtat 570  Q
    ||||||| || | |||| |||||||||||||||||||||||||| ||||||| |||| |||||||||    
T  21032525 agtactctctccagtcactattataagcaaaactccactttttatatacattgaataattaatgtat 21032591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 506 - 575
Target Start/End: Original strand, 5240221 - 5240290
Alignment:
Q  506 tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagt 575  Q
    |||||||| |||||| |||||||||||||| |  | |||||||||||||| |||| ||||||||||||||    
T  5240221 tactccctccggtcactattataagcaaaatttgattttttagatacattgaataattaatgtatctagt 5240290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 506 - 575
Target Start/End: Complemental strand, 42364365 - 42364296
Alignment:
Q  506 tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagt 575  Q
    |||||| | |||||| |||||||||||||||| ||||||||||||||||| |||| |||  |||||||||    
T  42364365 tactccttccggtcactattataagcaaaacttcactttttagatacattgaataattagggtatctagt 42364296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 513 - 599
Target Start/End: Original strand, 29486500 - 29486586
Alignment:
Q  513 ttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattatagattaaatatatta 599  Q
    |||| ||| |||||||||||||| | ||| ||||||||||||| |||| |||||||||||||| | |  || ||| |||||||||||    
T  29486500 ttcgatcactattataagcaaaatttcacattttagatacattgaataattaatgtatctagtttatgataaagactaaatatatta 29486586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 585
Target Start/End: Original strand, 23914840 - 23914915
Alignment:
Q  510 cccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata 585  Q
    |||| |||||| || ||||||||||| ||||||||||||||||||| |||   | |||||| | ||||||||||||    
T  23914840 ccctccggtcactaatataagcaaaaatccactttttagatacattcaattaatgatgtatgtggtctttattata 23914915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 585
Target Start/End: Original strand, 13157337 - 13157407
Alignment:
Q  515 cggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata 585  Q
    ||||||||| ||||||||||| ||||||||||||||| ||| |||   | |||||| | ||||||||||||    
T  13157337 cggtcattaatataagcaaaaatccactttttagatatattcaattaatgatgtatatggtctttattata 13157407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 585
Target Start/End: Original strand, 42364224 - 42364294
Alignment:
Q  515 cggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata 585  Q
    |||||| | |||||| ||||| |  |||||||| ||||||| |||| ||||||||| ||||||||||||||    
T  42364224 cggtcactgttataaacaaaaatttactttttaaatacattgaataattaatgtatgtagtctttattata 42364294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 587
Target Start/End: Original strand, 12959938 - 12960022
Alignment:
Q  505 gtactcccttcggtcattattataagcaaaactccactttttagatacattaaatag--ttaatgtatctagtctttattataga 587  Q
    ||||||| |||||| | |||| ||| ||||||| ||| ||||| ||| ||| ||||   ||||||||||||||||||||||||||    
T  12959938 gtactccattcggttactattgtaaacaaaacttcacattttaaatatattgaataaaattaatgtatctagtctttattataga 12960022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 570
Target Start/End: Original strand, 892562 - 892610
Alignment:
Q  522 tattataagcaaaactccactttttagatacattaaatagttaatgtat 570  Q
    |||||||||||||| | |||||||||||| |||| |||| |||||||||    
T  892562 tattataagcaaaaattcactttttagattcattgaataattaatgtat 892610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 525 - 585
Target Start/End: Original strand, 3851377 - 3851437
Alignment:
Q  525 tataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata 585  Q
    ||||||||||| ||||||||||||||||||| |||   | |||||| | ||||||||||||    
T  3851377 tataagcaaaaatccactttttagatacattcaattaatgatgtatgtggtctttattata 3851437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 505 - 573
Target Start/End: Complemental strand, 14751271 - 14751203
Alignment:
Q  505 gtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatcta 573  Q
    ||||||||| ||||||   ||||||||||||  | ||||||||| |||||| ||||||| |||||||||    
T  14751271 gtactccctccggtcacatttataagcaaaaaacaactttttaggtacattgaatagttgatgtatcta 14751203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Original strand, 15712125 - 15712165
Alignment:
Q  515 cggtcattattataagcaaaactccactttttagatacatt 555  Q
    ||||||||| ||||||||||| |||| ||||||||||||||    
T  15712125 cggtcattaatataagcaaaaatccattttttagatacatt 15712165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 506 - 570
Target Start/End: Original strand, 18261595 - 18261659
Alignment:
Q  506 tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtat 570  Q
    |||||||| |||||| |||||||||||||| | |||||| ||||| |||| ||||  ||||||||    
T  18261595 tactccctccggtcactattataagcaaaagttcactttatagattcattcaataaataatgtat 18261659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Original strand, 35969132 - 35969172
Alignment:
Q  515 cggtcattattataagcaaaactccactttttagatacatt 555  Q
    |||||| || ||||||||||| |||||||||||||||||||    
T  35969132 cggtcactaatataagcaaaaatccactttttagatacatt 35969172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 513 - 587
Target Start/End: Complemental strand, 35239791 - 35239717
Alignment:
Q  513 ttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga 587  Q
    |||||||| |||||||| ||||| |  || ||||||||||||| |||||||||||||||||||||||||||||||    
T  35239791 ttcggtcactattataaccaaaatttgacattttagatacattgaatagttaatgtatctagtctttattataga 35239717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 513 - 586
Target Start/End: Original strand, 50334923 - 50334996
Alignment:
Q  513 ttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattatag 586  Q
    |||||| | |||||||| ||||||| ||| ||||||||||||| |||| |||||||||||| ||||||||||||    
T  50334923 ttcggttaatattataaacaaaacttcacattttagatacattgaataattaatgtatctaatctttattatag 50334996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 510 - 557
Target Start/End: Original strand, 38455164 - 38455211
Alignment:
Q  510 cccttcggtcattattataagcaaaactccactttttagatacattaa 557  Q
    |||| ||||||||| ||||||||||| |||||||||||||||||||||    
T  38455164 ccctccggtcattaatataagcaaaaatccactttttagatacattaa 38455211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 503 - 585
Target Start/End: Original strand, 32186881 - 32186963
Alignment:
Q  503 aagtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata 585  Q
    |||||||| || |||||| | |||||| ||||| | ||||||||| ||||||  |||| ||||||||| ||||||||||||||    
T  32186881 aagtactctctccggtcactgttataaacaaaatttcactttttaaatacatggaataattaatgtatatagtctttattata 32186963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 506 - 583
Target Start/End: Original strand, 39964290 - 39964367
Alignment:
Q  506 tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttatta 583  Q
    |||||||| |||||||||||||||||||||  | ||||||||||| |||| ||||  | |||||| |||||| |||||    
T  39964290 tactccctccggtcattattataagcaaaaaactactttttagattcattgaataaattatgtatgtagtctatatta 39964367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 542 - 593
Target Start/End: Original strand, 30082252 - 30082303
Alignment:
Q  542 tttttagatacattaaatagttaatgtatctagtctttattatagattaaat 593  Q
    |||||||||||||| |||| ||||||| | ||||||||||||||||| ||||    
T  30082252 tttttagatacattgaataattaatgtttttagtctttattatagatcaaat 30082303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 522 - 557
Target Start/End: Original strand, 42912352 - 42912387
Alignment:
Q  522 tattataagcaaaactccactttttagatacattaa 557  Q
    |||||||||||||||| |||||||||||||||||||    
T  42912352 tattataagcaaaacttcactttttagatacattaa 42912387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 557
Target Start/End: Complemental strand, 52168424 - 52168377
Alignment:
Q  510 cccttcggtcattattataagcaaaactccactttttagatacattaa 557  Q
    |||| |||||||||  |||||||||| |||||||||||||||||||||    
T  52168424 ccctccggtcattaacataagcaaaaatccactttttagatacattaa 52168377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 555
Target Start/End: Complemental strand, 39579638 - 39579589
Alignment:
Q  506 tactcccttcggtcattattataagcaaaactccactttttagatacatt 555  Q
    ||||||||||| ||| |||||||||||||| || ||||||||||| ||||    
T  39579638 tactcccttcgatcactattataagcaaaaatcaactttttagattcatt 39579589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 51617472 - 51617427
Alignment:
Q  510 cccttcggtcattattataagcaaaactccactttttagatacatt 555  Q
    |||| |||||| || ||||||||||| |||||||||||||||||||    
T  51617472 ccctccggtcactaatataagcaaaattccactttttagatacatt 51617427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 503 - 555
Target Start/End: Complemental strand, 12745049 - 12744997
Alignment:
Q  503 aagtactcccttcggtcattattataagcaaaactccactttttagatacatt 555  Q
    |||||| ||||||||||| |||||||||||||| |  || |||||||||||||    
T  12745049 aagtacacccttcggtcactattataagcaaaaattaacattttagatacatt 12744997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 525 - 585
Target Start/End: Original strand, 50260947 - 50261007
Alignment:
Q  525 tataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata 585  Q
    ||||||||||| ||||||||||||||||||| |||   | |||||| | ||||||||||||    
T  50260947 tataagcaaaaatccactttttagatacattcaattaatgatgtatgtggtctttattata 50261007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 518 - 570
Target Start/End: Original strand, 53711868 - 53711920
Alignment:
Q  518 tcattattataagcaaaactccactttttagatacattaaatagttaatgtat 570  Q
    ||||||||||||| |||| | ||||||||| |||| ||||||| |||||||||    
T  53711868 tcattattataagtaaaatttcactttttaaatactttaaataattaatgtat 53711920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 506 - 587
Target Start/End: Complemental strand, 8996898 - 8996817
Alignment:
Q  506 tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga 587  Q
    ||||| || |||||| ||||||||||||||||| ||||| |||||||||| |||| | ||||||| ||||||||||||||||    
T  8996898 tactctctccggtcactattataagcaaaactctactttctagatacattgaataatcaatgtatatagtctttattataga 8996817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 515 - 573
Target Start/End: Complemental strand, 10495780 - 10495722
Alignment:
Q  515 cggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatcta 573  Q
    |||||| |||||||||||||| | ||||||||||||||||| |||| ||||||||||||    
T  10495780 cggtcactattataagcaaaatttcactttttagatacattgaatatttaatgtatcta 10495722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 506 - 566
Target Start/End: Original strand, 43100744 - 43100804
Alignment:
Q  506 tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaat 566  Q
    ||||||||||||||| |||||||||||||| | || |||||||||||||| |||| |||||    
T  43100744 tactcccttcggtcactattataagcaaaaattcattttttagatacattgaataattaat 43100804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 542 - 585
Target Start/End: Original strand, 8717540 - 8717583
Alignment:
Q  542 tttttagatacattaaatagttaatgtatctagtctttattata 585  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||    
T  8717540 tttttagatacattaaataattaatgtatttagtctttattata 8717583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 504 - 577
Target Start/End: Original strand, 8996716 - 8996789
Alignment:
Q  504 agtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtct 577  Q
    ||||||| || || ||| |||||||||||||| | |  |||||||||||||| |||| ||||||||||||||||    
T  8996716 agtactctctccgatcactattataagcaaaatttcggtttttagatacattgaataattaatgtatctagtct 8996789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 552 - 599
Target Start/End: Original strand, 39792136 - 39792183
Alignment:
Q  552 cattaaatagttaatgtatctagtctttattatagattaaatatatta 599  Q
    ||||||||| |||||||||||||| |||||||||||||| ||| ||||    
T  39792136 cattaaataattaatgtatctagtttttattatagattagatacatta 39792183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 548
Target Start/End: Original strand, 23143481 - 23143523
Alignment:
Q  506 tactcccttcggtcattattataagcaaaactccactttttag 548  Q
    ||||||||||||||| |||||||||||||| || |||||||||    
T  23143481 tactcccttcggtcactattataagcaaaaatcaactttttag 23143523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 548
Target Start/End: Original strand, 23555271 - 23555313
Alignment:
Q  506 tactcccttcggtcattattataagcaaaactccactttttag 548  Q
    ||||||||||||||| |||||||||||||| || |||||||||    
T  23555271 tactcccttcggtcactattataagcaaaaatcaactttttag 23555313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 458
Target Start/End: Complemental strand, 2908834 - 2908794
Alignment:
Q  417 gaattgagaatatcctcaaaaatactcttccatttccaaact 458  Q
    ||||||||||||||||| |||||||||||||| |||||||||    
T  2908834 gaattgagaatatcctc-aaaatactcttccacttccaaact 2908794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 524 - 573
Target Start/End: Original strand, 10495701 - 10495749
Alignment:
Q  524 ttataagcaaaactccactttttagatacattaaatagttaatgtatcta 573  Q
    ||||||||||||||||  ||||||||||||||||||| | ||||||||||    
T  10495701 ttataagcaaaactccg-tttttagatacattaaatattcaatgtatcta 10495749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 582
Target Start/End: Original strand, 41540684 - 41540729
Alignment:
Q  537 tccactttttagatacattaaatagttaatgtatctagtctttatt 582  Q
    ||||||||||||||| |||||||| |||||  ||||||||||||||    
T  41540684 tccactttttagataaattaaataattaatacatctagtctttatt 41540729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 542 - 598
Target Start/End: Original strand, 13953797 - 13953853
Alignment:
Q  542 tttttagatacattaaatagttaatgtatctagtctttattatagattaaatatatt 598  Q
    |||||||||| |||||||| ||| | ||| |||||||||||||| |||| |||||||    
T  13953797 tttttagatatattaaataattagtctatatagtctttattataaattagatatatt 13953853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 542 - 598
Target Start/End: Original strand, 14095004 - 14095060
Alignment:
Q  542 tttttagatacattaaatagttaatgtatctagtctttattatagattaaatatatt 598  Q
    |||||||||| |||||||| ||| | ||| |||||||||||||| |||| |||||||    
T  14095004 tttttagatatattaaataattagtctatatagtctttattataaattagatatatt 14095060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 38227198 - 38227238
Alignment:
Q  510 cccttcggtcattattataagcaaaactccactttttagat 550  Q
    |||| |||||||||||||||||||||  |||||||||||||    
T  38227198 ccctccggtcattattataagcaaaaaaccactttttagat 38227238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 506 - 599
Target Start/End: Original strand, 8352130 - 8352223
Alignment:
Q  506 tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattatagattaaatatatta 599  Q
    ||||||||  ||||| |||||||||||||||| || |||||||||||||| |||  |||||||||||| | ||||||||||| |||||| ||||    
T  8352130 tactccctctggtcactattataagcaaaacttcattttttagatacattgaatgattaatgtatctaatatttattatagaataaatacatta 8352223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 503 - 587
Target Start/End: Original strand, 26468286 - 26468370
Alignment:
Q  503 aagtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga 587  Q
    ||||||||| |||||||| |||||||| ||||| | ||||||||| ||||||| |||| |||||||||||| | |||||||||||    
T  26468286 aagtactccattcggtcactattataaacaaaatttcactttttaaatacattgaataattaatgtatctaatttttattataga 26468370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 512 - 573
Target Start/End: Complemental strand, 43731258 - 43731197
Alignment:
Q  512 cttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatcta 573  Q
    ||||||| |||||||||||||||| | || |||||||||||||| |||||||||||||||||    
T  43731258 cttcggttattattataagcaaaatttcattttttagatacattgaatagttaatgtatcta 43731197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 506 - 577
Target Start/End: Original strand, 1409044 - 1409116
Alignment:
Q  506 tactcccttcggtcattattataagcaaaactccactttttagataca-ttaaatagttaatgtatctagtct 577  Q
    |||||| |||||||| |||||||||||||| | |||||||||||| || |||||||  |||||||||||||||    
T  1409044 tactcctttcggtcactattataagcaaaagttcactttttagattcatttaaataaataatgtatctagtct 1409116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 517 - 570
Target Start/End: Complemental strand, 8352269 - 8352216
Alignment:
Q  517 gtcattattataagcaaaactccactttttagatacattaaatagttaatgtat 570  Q
    ||||||||||||||||||||| | ||||||||||| ||| |||| |||||||||    
T  8352269 gtcattattataagcaaaacttccctttttagatatattgaataattaatgtat 8352216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 522 - 587
Target Start/End: Complemental strand, 14773852 - 14773787
Alignment:
Q  522 tattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga 587  Q
    |||||||||||||| |  |||||||||||| |||  ||| |||||||||||||||| |||||||||    
T  14773852 tattataagcaaaatttaactttttagatatattgtataattaatgtatctagtctgtattataga 14773787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 31008400 - 31008355
Alignment:
Q  510 cccttcggtcattattataagcaaaactccactttttagatacatt 555  Q
    |||| ||||||||| ||||||||||| |||||||||||||||||||    
T  31008400 ccctccggtcattaatataagcaaaaatccactttttagatacatt 31008355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 505 - 585
Target Start/End: Original strand, 639793 - 639873
Alignment:
Q  505 gtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata 585  Q
    |||| |||| |||||| || ||||||||||| ||||||||||||||||||| |||   | |||||| | ||||||||||||    
T  639793 gtacaccctccggtcactaatataagcaaaaatccactttttagatacattcaattaatgatgtatgtggtctttattata 639873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 503 - 555
Target Start/End: Original strand, 3384215 - 3384267
Alignment:
Q  503 aagtactcccttcggtcattattataagcaaaactccactttttagatacatt 555  Q
    |||||| |||| ||||||||| ||||||||||| | |||||||||||||||||    
T  3384215 aagtacaccctccggtcattaatataagcaaaaattcactttttagatacatt 3384267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 585
Target Start/End: Complemental strand, 33604132 - 33604057
Alignment:
Q  510 cccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata 585  Q
    |||| |||||| || ||||||||||| ||||||||||||||||||| |||   | |||||| | ||||||||||||    
T  33604132 ccctccggtcactaatataagcaaaaatccactttttagatacattcaattaatgatgtatgtggtctttattata 33604057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 585
Target Start/End: Original strand, 48022594 - 48022669
Alignment:
Q  510 cccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata 585  Q
    |||| |||||| || ||||||||||| ||||||||||||||||||| |||   | |||||| | ||||||||||||    
T  48022594 ccctccggtcactaatataagcaaaaatccactttttagatacattcaattaatgatgtatgtggtctttattata 48022669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 571
Target Start/End: Complemental strand, 5368919 - 5368854
Alignment:
Q  506 tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatc 571  Q
    |||||||| |||||||  |||||||||||| |  ||||||||||| |||| |||| ||||||||||    
T  5368919 tactccctccggtcatatttataagcaaaaattaactttttagatgcattgaataattaatgtatc 5368854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 14418198 - 14418153
Alignment:
Q  510 cccttcggtcattattataagcaaaactccactttttagatacatt 555  Q
    |||| ||||||||| ||||||||||| | |||||||||||||||||    
T  14418198 ccctccggtcattaatataagcaaaaattcactttttagatacatt 14418153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 17490487 - 17490532
Alignment:
Q  510 cccttcggtcattattataagcaaaactccactttttagatacatt 555  Q
    |||| |||||| || ||||||||||| |||||||||||||||||||    
T  17490487 ccctccggtcactaatataagcaaaaatccactttttagatacatt 17490532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 571
Target Start/End: Complemental strand, 30800342 - 30800289
Alignment:
Q  518 tcattattataagcaaaactccactttttagatacattaaatagttaatgtatc 571  Q
    ||||| |||||| |||||||| |||||||||||| ||| |||| ||||||||||    
T  30800342 tcattgttataaacaaaactctactttttagatatattgaataattaatgtatc 30800289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 37734914 - 37734869
Alignment:
Q  510 cccttcggtcattattataagcaaaactccactttttagatacatt 555  Q
    |||| |||||| || ||||||||||| |||||||||||||||||||    
T  37734914 ccctccggtcactaatataagcaaaaatccactttttagatacatt 37734869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 572
Target Start/End: Original strand, 1609977 - 1610025
Alignment:
Q  524 ttataagcaaaactccactttttagatacattaaatagttaatgtatct 572  Q
    ||||||||||||  | |||||||||||||||| |||| |||||||||||    
T  1609977 ttataagcaaaaaacaactttttagatacattgaataattaatgtatct 1610025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 525 - 585
Target Start/End: Original strand, 27206773 - 27206833
Alignment:
Q  525 tataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata 585  Q
    |||||||||||  |||||||||||||||||| |||   | |||||| ||||||||||||||    
T  27206773 tataagcaaaaaaccactttttagatacattcaattaatgatgtatgtagtctttattata 27206833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 548
Target Start/End: Original strand, 29043447 - 29043491
Alignment:
Q  504 agtactcccttcggtcattattataagcaaaactccactttttag 548  Q
    |||||||||| || |||||||||||||||||| || |||||||||    
T  29043447 agtactccctccgctcattattataagcaaaaatcaactttttag 29043491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 525 - 577
Target Start/End: Complemental strand, 31635871 - 31635819
Alignment:
Q  525 tataagcaaaactccactttttagatacattaaatagttaatgtatctagtct 577  Q
    ||||||||||| | ||||||||||||||||| ||||  |||| ||||||||||    
T  31635871 tataagcaaaatttcactttttagatacattgaataactaatatatctagtct 31635819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 587
Target Start/End: Original strand, 42761457 - 42761529
Alignment:
Q  515 cggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga 587  Q
    |||||||||||||||||||||||  || |||||||| |||| |||   | ||||||||  |||||||||||||    
T  42761457 cggtcattattataagcaaaactttacattttagattcattcaattaatgatgtatctgatctttattataga 42761529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 506 - 570
Target Start/End: Original strand, 26982759 - 26982823
Alignment:
Q  506 tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtat 570  Q
    |||| |||||||||| |||||||||||||||| ||||||||||||||||| |||| |||||||||    
T  26982759 tacttccttcggtcactattataagcaaaacttcactttttagatacattgaataattaatgtat 26982823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 506 - 599
Target Start/End: Original strand, 4132381 - 4132475
Alignment:
Q  506 tactcccttcggtcattattataagcaaaactccactttt-tagatacattaaatagttaatgtatctagtctttattatagattaaatatatta 599  Q
    |||||| | |||||| |||||||||||||| | ||||||| |||||||||| |||| ||||||||| |||| ||||||||||| |||||| ||||    
T  4132381 tactccatccggtcaatattataagcaaaatttcacttttttagatacattgaataattaatgtatatagtatttattatagactaaatacatta 4132475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 504 - 575
Target Start/End: Original strand, 21857062 - 21857133
Alignment:
Q  504 agtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagt 575  Q
    |||||||||| |||||| |||||||||||||| |  |||||||||| ||||| |||| ||||||||||||||    
T  21857062 agtactccctccggtcactattataagcaaaagtttactttttagacacattgaataattaatgtatctagt 21857133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 516 - 577
Target Start/End: Complemental strand, 4132522 - 4132461
Alignment:
Q  516 ggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtct 577  Q
    |||||||||||||| |||||||  |||||||||||||||| |||| ||||||||| ||||||    
T  4132522 ggtcattattataaacaaaacttaactttttagatacattgaatatttaatgtatttagtct 4132461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 515 - 573
Target Start/End: Original strand, 21587839 - 21587897
Alignment:
Q  515 cggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatcta 573  Q
    |||||| |||||||||||||||| ||||||  |||| ||||||||| ||||||||||||    
T  21587839 cggtcactattataagcaaaacttcactttcaagatgcattaaataattaatgtatcta 21587897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 560
Target Start/End: Original strand, 34840609 - 34840663
Alignment:
Q  506 tactcccttcggtcattattataagcaaaactccactttttagatacattaaata 560  Q
    |||||||| ||||||||||||||||||||| | |||||||||||| |||| ||||    
T  34840609 tactccctccggtcattattataagcaaaagttcactttttagattcattcaata 34840663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 517 - 587
Target Start/End: Original strand, 41115556 - 41115626
Alignment:
Q  517 gtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga 587  Q
    ||||| |||||||| ||||||  ||||| |||||||||| || | |||||||||||| |||||||||||||    
T  41115556 gtcatcattataagtaaaactgtactttgtagatacattgaacaattaatgtatctaatctttattataga 41115626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 517 - 570
Target Start/End: Complemental strand, 43250473 - 43250420
Alignment:
Q  517 gtcattattataagcaaaactccactttttagatacattaaatagttaatgtat 570  Q
    |||| ||||||||||||||||  |||||||||||||||| |||| |||||||||    
T  43250473 gtcactattataagcaaaactttactttttagatacattgaataattaatgtat 43250420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 506 - 573
Target Start/End: Complemental strand, 24155702 - 24155635
Alignment:
Q  506 tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatcta 573  Q
    ||||||||||  ||| ||| |||| ||||||| || ||||||||||||||||||| ||||| ||||||    
T  24155702 tactcccttctatcactatcataaacaaaacttcaatttttagatacattaaataattaatttatcta 24155635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 587
Target Start/End: Original strand, 38646164 - 38646242
Alignment:
Q  509 tcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga 587  Q
    ||||| |||| | ||||||||| ||||||| |||||||||||||||| |||| ||||| ||| || | ||| |||||||    
T  38646164 tccctccggttactattataagtaaaactcaactttttagatacattgaataattaatatatttaatttttgttataga 38646242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 575
Target Start/End: Complemental strand, 21857222 - 21857162
Alignment:
Q  515 cggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagt 575  Q
    |||||| |||||||||||||| | || |||||||| | ||| |||| ||||||||||||||    
T  21857222 cggtcactattataagcaaaaattcattttttagacatattgaataattaatgtatctagt 21857162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Complemental strand, 29498919 - 29498879
Alignment:
Q  515 cggtcattattataagcaaaactccactttttagatacatt 555  Q
    ||||||||| ||||||||||| |||| ||||||||||||||    
T  29498919 cggtcattaatataagcaaaaatccattttttagatacatt 29498879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 560
Target Start/End: Original strand, 43250374 - 43250418
Alignment:
Q  516 ggtcattattataagcaaaactccactttttagatacattaaata 560  Q
    ||||| ||||||||||||||||  |||||||||||||||| ||||    
T  43250374 ggtcactattataagcaaaactttactttttagatacattgaata 43250418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 505 - 585
Target Start/End: Complemental strand, 45000747 - 45000667
Alignment:
Q  505 gtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata 585  Q
    |||| ||||||||||| || ||||||||||| |  |||||||||| ||||| ||| | | |||||| | ||||||||||||    
T  45000747 gtacacccttcggtcactaatataagcaaaaatgtactttttagacacattcaattgatgatgtatgtggtctttattata 45000667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 556
Target Start/End: Complemental strand, 34020 - 33970
Alignment:
Q  506 tactcccttcggtcattattataagcaaaactccactttttagatacatta 556  Q
    ||||| |||| |||||||||| |||||||||| ||||||||||||||||||    
T  34020 tactcgcttctgtcattattacaagcaaaacttcactttttagatacatta 33970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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