View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0117A6 (Length: 605)
Name: NF0117A6
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0117A6
[» ] scaffold0155 (1 HSPs)
Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 14)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 34 - 300
Target Start/End: Original strand, 6197351 - 6197615
Alignment:
Q
34
cccttgcttagacgctgcttttctctattgaaagttgtttgggttgaaaatgtgactattatgtgttccttcatcttcctccattacccttaattcttta
133
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
6197351
cccttgcttagacgctgcttttctctattgaaagttgtttgggttgaaaatgtgactattatgtgttccttcatcttcctccattacccttaattcttta
6197450
T
Q
134
ataacaactcaactttttataataagtccattatatggtgtacaagtgagacatgttttgcatcttgcacaaatcgatatctaccactggatcaataagt
233
Q
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
T
6197451
ataacaactcaactttttataataagtccattctatggtgtacaagtgagacatgttttgcatcttgcacaaatcgatatctaccattggatcaataagt
6197550
T
Q
234
caccattgaatcattctttgtgtcatgcacaaattgatttctacaaatttaagtataataatgtatt
300
Q
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
T
6197551
caccattgaatcattc--tgtgtcatgcacaaattgatttctacaaatttaagtataataatgtatt
6197615
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 417 - 599
Target Start/End: Original strand, 6197732 - 6197914
Alignment:
Q
417
gaattgagaatatcctcaaaaatactcttccatttccaaacttcaacaaggtgtaagttaacagctaacactttaactaaaaactcaagtactcccttcg
516
Q
|||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||| ||
T
6197732
gaattgagaatatcctcaaaaatactcttccacttccaaactttaataaggtgtaagttaacaactaacactttaactaaaaactcaagtactccctccg
6197831
T
Q
517
gtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattatagattaaatatatta
599
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
T
6197832
gtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttatcatagattaaatacatta
6197914
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 506 - 570
Target Start/End: Complemental strand, 6197971 - 6197907
Alignment:
Q
506
tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtat
570
Q
|||||| | |||||| |||||||||||||||| ||||||||||||||||||||| |||||||||
T
6197971
tactccatccggtcactattataagcaaaactttactttttagatacattaaataattaatgtat
6197907
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 503 - 588
Target Start/End: Complemental strand, 11322709 - 11322625
Alignment:
Q
503
aagtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattatagat
588
Q
||||||||||| || ||| |||||||||||||||| || |||||||||| ||| |||| ||||| |||| | ||||||||||||||
T
11322709
aagtactccctccgatcactattataagcaaaact-caatttttagatatattgaataattaatatatccaatctttattatagat
11322625
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 518 - 587
Target Start/End: Original strand, 27938998 - 27939067
Alignment:
Q
518
tcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga
587
Q
||||||| ||||| ||||||||||||| || | |||| |||| | ||||||||||||||||||||||||
T
27938998
tcattatcataagtaaaactccactttataagtgcattgaataatcaatgtatctagtctttattataga
27939067
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 585
Target Start/End: Original strand, 14381237 - 14381312
Alignment:
Q
510
cccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata
585
Q
|||| |||||| || ||||||||||| ||||||||||||||||||| ||| | |||||| | ||||||||||||
T
14381237
ccctccggtcactaatataagcaaaaatccactttttagatacattcaattaatgatgtatgtggtctttattata
14381312
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 585
Target Start/End: Complemental strand, 40098901 - 40098826
Alignment:
Q
510
cccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata
585
Q
|||| |||||| || ||||||||||| ||||||||||||||||||| ||| | |||||| | ||||||||||||
T
40098901
ccctccggtcactaatataagcaaaaatccactttttagatacattcaattaatgatgtatgtggtctttattata
40098826
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 573
Target Start/End: Complemental strand, 43140683 - 43140626
Alignment:
Q
515
cggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatcta
573
Q
||||||||||||||| ||||||| || ||||||||||| || |||| ||||||||||||
T
43140683
cggtcattattataaacaaaacttcattttttagatac-ttgaataattaatgtatcta
43140626
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 528 - 577
Target Start/End: Original strand, 158444 - 158493
Alignment:
Q
528
aagcaaaactccactttttagatacattaaatagttaatgtatctagtct
577
Q
|||||||| | ||||||||||||||||| |||| ||||||||| ||||||
T
158444
aagcaaaatttcactttttagatacattgaataattaatgtatgtagtct
158493
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 575
Target Start/End: Complemental strand, 13325236 - 13325167
Alignment:
Q
506
tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagt
575
Q
|||||||| | |||||||||||||| |||||| |||||||||| || ||| |||| | ||||||| ||||
T
13325236
tactccctcctgtcattattataaggaaaacttcactttttaggtatattgaataatcaatgtatttagt
13325167
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 542 - 578
Target Start/End: Original strand, 325243 - 325279
Alignment:
Q
542
tttttagatacattaaatagttaatgtatctagtctt
578
Q
|||||||||||||| |||| |||||||||||||||||
T
325243
tttttagatacatttaataattaatgtatctagtctt
325279
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 505 - 585
Target Start/End: Complemental strand, 9056167 - 9056087
Alignment:
Q
505
gtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata
585
Q
|||| |||| |||||| || ||||||||||| | ||||||||||||||||| ||| | |||||| | ||||||||||||
T
9056167
gtacaccctccggtcactaatataagcaaaaattcactttttagatacatttaattaatgatgtatgtggtctttattata
9056087
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 517 - 585
Target Start/End: Complemental strand, 27503035 - 27502967
Alignment:
Q
517
gtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata
585
Q
||||||||||||||||||| || || ||||||||||||| | | |||| ||| ||||||||||||||
T
27503035
gtcattattataagcaaaaatcaacattttagatacattcataaaataatatatgtagtctttattata
27502967
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 579
Target Start/End: Original strand, 43140550 - 43140614
Alignment:
Q
515
cggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtcttt
579
Q
|||||| |||||||| |||||| |||| ||||||||||| |||| |||||||||||| |||||
T
43140550
cggtcactattataaacaaaacattacttattagatacattgaataattaatgtatctaatcttt
43140614
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 17)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 506 - 587
Target Start/End: Original strand, 14589538 - 14589619
Alignment:
Q
506
tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga
587
Q
|||||||||||||||||||||||| ||||||| ||||||| ||||||||| |||| || |||||||||||||||||||||||
T
14589538
tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttattataga
14589619
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 513 - 587
Target Start/End: Original strand, 14623203 - 14623277
Alignment:
Q
513
ttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga
587
Q
||||||||||||||||||||||||| ||||||| ||||||||| |||| || ||||||||| |||||||||||||
T
14623203
ttcggtcattattataagcaaaacttcacttttcagatacattgaataattcatgtatctaatctttattataga
14623277
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 517 - 587
Target Start/End: Original strand, 33123017 - 33123087
Alignment:
Q
517
gtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga
587
Q
||||||||||||| ||||||| ||||||||| ||||||| |||| |||||||||||||||||| |||||||
T
33123017
gtcattattataaacaaaacttcactttttaaatacattgaataattaatgtatctagtcttttttataga
33123087
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 525 - 585
Target Start/End: Original strand, 14093095 - 14093155
Alignment:
Q
525
tataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata
585
Q
|||||| ||||||| |||||||| |||||||||||| ||||||||||||||||||||||||
T
14093095
tataagaaaaactcaactttttaaatacattaaataattaatgtatctagtctttattata
14093155
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 521 - 587
Target Start/End: Original strand, 26388201 - 26388267
Alignment:
Q
521
ttattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga
587
Q
||||||||| |||||||| |||||||||||| ||| |||| |||||||||||| |||||||||||||
T
26388201
ttattataaacaaaactctactttttagatatattgaataattaatgtatctaatctttattataga
26388267
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 504 - 599
Target Start/End: Complemental strand, 26388338 - 26388243
Alignment:
Q
504
agtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattatagattaaatatatta
599
Q
|||||||||| |||||| ||||||||| |||||||||||||||| ||| ||| |||| ||||||||| ||||| || || |||||| ||| ||||
T
26388338
agtactccctccggtcactattataagaaaaactccactttttatatatattgaataattaatgtattcagtctataataaagattagatacatta
26388243
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 525 - 587
Target Start/End: Original strand, 3989524 - 3989586
Alignment:
Q
525
tataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga
587
Q
||||||||||||| ||||||||| |||||| ||||| | ||||| ||||||||||||||||||
T
3989524
tataagcaaaacttcactttttaaatacataaaataatcaatgtttctagtctttattataga
3989586
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 532 - 582
Target Start/End: Complemental strand, 29938734 - 29938684
Alignment:
Q
532
aaaactccactttttagatacattaaatagttaatgtatctagtctttatt
582
Q
||||||| |||||||||||||||| |||| |||||||||||||||||||||
T
29938734
aaaactctactttttagatacattgaataattaatgtatctagtctttatt
29938684
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 506 - 571
Target Start/End: Complemental strand, 7632915 - 7632850
Alignment:
Q
506
tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatc
571
Q
|||||||| ||||||||||||||| ||||||| |||||||||||||| | |||| ||||||||||
T
7632915
tactccctccggtcattattataaacaaaacttaactttttagatacactgaataattaatgtatc
7632850
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 504 - 587
Target Start/End: Original strand, 7632763 - 7632846
Alignment:
Q
504
agtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga
587
Q
|||||||| | || ||| |||||||| ||||||| |||||| || |||||| |||| | ||||||||||||||||||||||||
T
7632763
agtactccatccgatcactattataaacaaaacttcactttctaactacattcaataatcaatgtatctagtctttattataga
7632846
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 560
Target Start/End: Complemental strand, 16121110 - 16121056
Alignment:
Q
506
tactcccttcggtcattattataagcaaaactccactttttagatacattaaata
560
Q
|||||||| || ||| |||||||||||||| || ||||||||||| |||||||||
T
16121110
tactccctccgatcactattataagcaaaaatcaactttttagattcattaaata
16121056
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 560
Target Start/End: Complemental strand, 32124269 - 32124215
Alignment:
Q
506
tactcccttcggtcattattataagcaaaactccactttttagatacattaaata
560
Q
||||| |||||||||||||||||||||||| | ||||||||||| |||| ||||
T
32124269
tactctcttcggtcattattataagcaaaaattgactttttagattcattcaata
32124215
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 595
Target Start/End: Original strand, 10405062 - 10405134
Alignment:
Q
522
tattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattatagattaaatat
595
Q
|||||||| |||||| || |||||| |||||||||||| ||||||||| ||||||||||| | ||||| ||||
T
10405062
tattataaataaaacttcattttttaaatacattaaataattaatgtat-tagtctttatttttgattagatat
10405134
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 516 - 585
Target Start/End: Original strand, 17773506 - 17773575
Alignment:
Q
516
ggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata
585
Q
||||| || ||||| ||||| ||||||||||||||||||| |||| | |||||| | ||||||||||||
T
17773506
ggtcactaatataaacaaaaatccactttttagatacattcaataaatgatgtatgtggtctttattata
17773575
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 21506462 - 21506507
Alignment:
Q
510
cccttcggtcattattataagcaaaactccactttttagatacatt
555
Q
|||| |||||| || ||||||||||| |||||||||||||||||||
T
21506462
ccctccggtcactaatataagcaaaaatccactttttagatacatt
21506507
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 575
Target Start/End: Original strand, 29938627 - 29938679
Alignment:
Q
522
tattataagcaaaactccactttttagatacattaaatagttaatgtatctagt
575
Q
||||||||| |||| | ||||||||||||||||| |||| ||||||||||||||
T
29938627
tattataagtaaaatttcactttttagatacatt-aataattaatgtatctagt
29938679
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 505 - 581
Target Start/End: Original strand, 23767929 - 23768005
Alignment:
Q
505
gtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttat
581
Q
|||||| || || ||| ||||||||| |||| | || ||||| ||||||||||||| ||||||| |||||| |||||
T
23767929
gtactctctccgatcaatattataagtaaaatttcagtttttcgatacattaaataattaatgtttctagtgtttat
23768005
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 7e-23; HSPs: 27)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 508 - 587
Target Start/End: Original strand, 22768141 - 22768220
Alignment:
Q
508
ctcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga
587
Q
|||||| |||||| ||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||
T
22768141
ctccctccggtcactattataagcaaaactccatattttagatacattgaataattaatgtatctagtctttattataga
22768220
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 517 - 587
Target Start/End: Original strand, 22720512 - 22720582
Alignment:
Q
517
gtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga
587
Q
|||| |||||||| ||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||
T
22720512
gtcactattataaacaaaattccactttttagatacattgaataattaatgtatctagtctttattataga
22720582
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 505 - 570
Target Start/End: Complemental strand, 22720652 - 22720587
Alignment:
Q
505
gtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtat
570
Q
||||||||| |||||| |||||||||||||||||||||||||||||||||| |||| |||||||||
T
22720652
gtactccctccggtcactattataagcaaaactccactttttagatacattgaataattaatgtat
22720587
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 506 - 570
Target Start/End: Original strand, 2198043 - 2198107
Alignment:
Q
506
tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtat
570
Q
|||||||| |||||| |||||||||||||||||||||||||||||||||| |||| |||||||||
T
2198043
tactccctccggtcactattataagcaaaactccactttttagatacattgaataattaatgtat
2198107
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 505 - 573
Target Start/End: Original strand, 22923653 - 22923721
Alignment:
Q
505
gtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatcta
573
Q
||||||||| |||||| ||||||||||||||||||| |||||||||||||| |||| ||||||||||||
T
22923653
gtactccctccggtcactattataagcaaaactccaatttttagatacattgaataattaatgtatcta
22923721
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 505 - 573
Target Start/End: Original strand, 22928306 - 22928374
Alignment:
Q
505
gtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatcta
573
Q
||||||||| |||||| ||||||||||||||||||| |||||||||||||| |||| ||||||||||||
T
22928306
gtactccctccggtcactattataagcaaaactccaatttttagatacattgaataattaatgtatcta
22928374
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 505 - 573
Target Start/End: Original strand, 22984585 - 22984653
Alignment:
Q
505
gtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatcta
573
Q
||||||||| |||||| ||||||||||||||||||| |||||||||||||| |||| ||||||||||||
T
22984585
gtactccctccggtcactattataagcaaaactccaatttttagatacattgaataattaatgtatcta
22984653
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 505 - 573
Target Start/End: Original strand, 22998173 - 22998241
Alignment:
Q
505
gtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatcta
573
Q
||||||||| |||||| ||||||||||||||||||| |||||||||||||| |||| ||||||||||||
T
22998173
gtactccctccggtcactattataagcaaaactccaatttttagatacattgaataattaatgtatcta
22998241
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 506 - 586
Target Start/End: Original strand, 52673593 - 52673673
Alignment:
Q
506
tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattatag
586
Q
|||||||| | |||| |||||||||||||||| |||||||||||| ||| |||| |||||||||||||| ||||||||||
T
52673593
tactccctcccgtcactattataagcaaaactttactttttagatatattgaataattaatgtatctagtttttattatag
52673673
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 516 - 583
Target Start/End: Complemental strand, 49083172 - 49083105
Alignment:
Q
516
ggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttatta
583
Q
||||| |||||||||||||| | ||| |||||||||||||||||| |||||||| ||| |||||||||
T
49083172
ggtcactattataagcaaaatttcacattttagatacattaaataattaatgtaactaatctttatta
49083105
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 513 - 571
Target Start/End: Complemental strand, 52673736 - 52673678
Alignment:
Q
513
ttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatc
571
Q
|||||||| |||||||||||||| | ||||||||||||||||| |||| ||||||||||
T
52673736
ttcggtcactattataagcaaaatttcactttttagatacattgaataattaatgtatc
52673678
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 506 - 594
Target Start/End: Original strand, 4641470 - 4641558
Alignment:
Q
506
tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattatagattaaata
594
Q
||||| |||| ||||||||||||||||||| | ||| |||| || || |||||||||| |||||||||||||||||||| ||||||
T
4641470
tactctcttctgtcattattataagcaaaattttactctttacatgtatagaatagttaatctatctagtctttattatagactaaata
4641558
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 543 - 599
Target Start/End: Original strand, 15794796 - 15794852
Alignment:
Q
543
ttttagatacattaaatagttaatgtatctagtctttattatagattaaatatatta
599
Q
||||||||||||| |||| ||||||||||| |||||||||||||| |||||| ||||
T
15794796
ttttagatacattgaataattaatgtatctggtctttattatagactaaatacatta
15794852
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 539 - 587
Target Start/End: Complemental strand, 41622209 - 41622161
Alignment:
Q
539
cactttttagatacattaaatagttaatgtatctagtctttattataga
587
Q
||||||||||||||||| ||| ||||||||||||||||||||||||||
T
41622209
cactttttagatacattgaatgattaatgtatctagtctttattataga
41622161
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 506 - 573
Target Start/End: Complemental strand, 22923761 - 22923694
Alignment:
Q
506
tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatcta
573
Q
|||||||| |||||| |||||||| ||||| |||| |||||||||||||||| || | ||||||||||
T
22923761
tactccctccggtcactattataaacaaaattccattttttagatacattaattattcaatgtatcta
22923694
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 506 - 573
Target Start/End: Complemental strand, 22928414 - 22928347
Alignment:
Q
506
tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatcta
573
Q
|||||||| |||||| |||||||| ||||| |||| |||||||||||||||| || | ||||||||||
T
22928414
tactccctccggtcactattataaacaaaattccattttttagatacattaattattcaatgtatcta
22928347
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 506 - 573
Target Start/End: Complemental strand, 22984693 - 22984626
Alignment:
Q
506
tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatcta
573
Q
|||||||| |||||| |||||||| ||||| |||| |||||||||||||||| || | ||||||||||
T
22984693
tactccctccggtcactattataaacaaaattccattttttagatacattaattattcaatgtatcta
22984626
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 506 - 573
Target Start/End: Complemental strand, 22998281 - 22998214
Alignment:
Q
506
tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatcta
573
Q
|||||||| |||||| |||||||| ||||| |||| |||||||||||||||| || | ||||||||||
T
22998281
tactccctccggtcactattataaacaaaattccattttttagatacattaattattcaatgtatcta
22998214
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 505 - 585
Target Start/End: Original strand, 44626156 - 44626236
Alignment:
Q
505
gtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata
585
Q
||||||||| |||||| |||||||| ||||| | | |||| ||||||||| |||| ||||||||||||||| |||||||
T
44626156
gtactccctccggtcactattataatcaaaattttatttttcagatacattgaataactaatgtatctagtctatattata
44626236
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 516 - 575
Target Start/End: Original strand, 49083047 - 49083105
Alignment:
Q
516
ggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagt
575
Q
||||| |||||||||||||||| || ||||||||| |||| |||| ||||||||||||||
T
49083047
ggtcactattataagcaaaacttca-tttttagatgcattgaataattaatgtatctagt
49083105
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 510 - 560
Target Start/End: Original strand, 19934637 - 19934687
Alignment:
Q
510
cccttcggtcattattataagcaaaactccactttttagatacattaaata
560
Q
|||| |||||| |||||||||||||| |||||||||||||| |||| ||||
T
19934637
ccctccggtcactattataagcaaaattccactttttagattcattcaata
19934687
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 505 - 567
Target Start/End: Complemental strand, 22768290 - 22768228
Alignment:
Q
505
gtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatg
567
Q
||||||||| |||||| || ||||| ||| ||| ||||||||||||||||| |||| ||||||
T
22768290
gtactccctccggtcactactataaacaacactacactttttagatacattgaataattaatg
22768228
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 510 - 560
Target Start/End: Original strand, 54164812 - 54164862
Alignment:
Q
510
cccttcggtcattattataagcaaaactccactttttagatacattaaata
560
Q
|||| |||||| |||||||||||||| |||||||||||||| |||| ||||
T
54164812
ccctccggtcactattataagcaaaattccactttttagattcattcaata
54164862
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 575
Target Start/End: Original strand, 52299073 - 52299141
Alignment:
Q
506
tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagt
575
Q
||||| |||| ||||||||||||||||||| | |||||||| ||||||| |||| ||||||||| ||||
T
52299073
tactctcttccgtcattattataagcaaaattttacttttta-atacattgaataattaatgtatttagt
52299141
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 52817708 - 52817663
Alignment:
Q
510
cccttcggtcattattataagcaaaactccactttttagatacatt
555
Q
|||| |||||| || ||||||||||| |||||||||||||||||||
T
52817708
ccctccggtcactaatataagcaaaaatccactttttagatacatt
52817663
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 543 - 599
Target Start/End: Complemental strand, 35151769 - 35151713
Alignment:
Q
543
ttttagatacattaaatagttaatgtatctagtctttattatagattaaatatatta
599
Q
|||||||| |||| ||| | | |||||| ||||||||||||||||||| ||||||||
T
35151769
ttttagattcattcaattgatgatgtatatagtctttattatagattatatatatta
35151713
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 506 - 570
Target Start/End: Original strand, 38562121 - 38562185
Alignment:
Q
506
tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtat
570
Q
||||||||||||||| |||||||||||| | |||| ||||||||||| |||| |||||||||
T
38562121
tactcccttcggtcacatttataagcaaaaaacaacttgttagatacattgaataattaatgtat
38562185
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 16)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 509 - 588
Target Start/End: Original strand, 26221022 - 26221101
Alignment:
Q
509
tcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattatagat
588
Q
||||| |||||| |||||||| ||||||| |||||||||||||||| |||| |||||||||||||| ||||||||||||
T
26221022
tccctccggtcaatattataaacaaaactttactttttagatacattgaataattaatgtatctagtttttattatagat
26221101
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 521 - 587
Target Start/End: Complemental strand, 21032662 - 21032596
Alignment:
Q
521
ttattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga
587
Q
||||||||| ||||| || |||||||||||| ||| |||| ||||||||||||||||||||||||||
T
21032662
ttattataaacaaaattctactttttagatatattgaataattaatgtatctagtctttattataga
21032596
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 504 - 570
Target Start/End: Original strand, 21032525 - 21032591
Alignment:
Q
504
agtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtat
570
Q
||||||| || | |||| |||||||||||||||||||||||||| ||||||| |||| |||||||||
T
21032525
agtactctctccagtcactattataagcaaaactccactttttatatacattgaataattaatgtat
21032591
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 506 - 575
Target Start/End: Original strand, 5240221 - 5240290
Alignment:
Q
506
tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagt
575
Q
|||||||| |||||| |||||||||||||| | | |||||||||||||| |||| ||||||||||||||
T
5240221
tactccctccggtcactattataagcaaaatttgattttttagatacattgaataattaatgtatctagt
5240290
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 506 - 575
Target Start/End: Complemental strand, 42364365 - 42364296
Alignment:
Q
506
tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagt
575
Q
|||||| | |||||| |||||||||||||||| ||||||||||||||||| |||| ||| |||||||||
T
42364365
tactccttccggtcactattataagcaaaacttcactttttagatacattgaataattagggtatctagt
42364296
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 513 - 599
Target Start/End: Original strand, 29486500 - 29486586
Alignment:
Q
513
ttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattatagattaaatatatta
599
Q
|||| ||| |||||||||||||| | ||| ||||||||||||| |||| |||||||||||||| | | || ||| |||||||||||
T
29486500
ttcgatcactattataagcaaaatttcacattttagatacattgaataattaatgtatctagtttatgataaagactaaatatatta
29486586
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 585
Target Start/End: Original strand, 23914840 - 23914915
Alignment:
Q
510
cccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata
585
Q
|||| |||||| || ||||||||||| ||||||||||||||||||| ||| | |||||| | ||||||||||||
T
23914840
ccctccggtcactaatataagcaaaaatccactttttagatacattcaattaatgatgtatgtggtctttattata
23914915
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 585
Target Start/End: Original strand, 13157337 - 13157407
Alignment:
Q
515
cggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata
585
Q
||||||||| ||||||||||| ||||||||||||||| ||| ||| | |||||| | ||||||||||||
T
13157337
cggtcattaatataagcaaaaatccactttttagatatattcaattaatgatgtatatggtctttattata
13157407
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 585
Target Start/End: Original strand, 42364224 - 42364294
Alignment:
Q
515
cggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata
585
Q
|||||| | |||||| ||||| | |||||||| ||||||| |||| ||||||||| ||||||||||||||
T
42364224
cggtcactgttataaacaaaaatttactttttaaatacattgaataattaatgtatgtagtctttattata
42364294
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 587
Target Start/End: Original strand, 12959938 - 12960022
Alignment:
Q
505
gtactcccttcggtcattattataagcaaaactccactttttagatacattaaatag--ttaatgtatctagtctttattataga
587
Q
||||||| |||||| | |||| ||| ||||||| ||| ||||| ||| ||| |||| ||||||||||||||||||||||||||
T
12959938
gtactccattcggttactattgtaaacaaaacttcacattttaaatatattgaataaaattaatgtatctagtctttattataga
12960022
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 570
Target Start/End: Original strand, 892562 - 892610
Alignment:
Q
522
tattataagcaaaactccactttttagatacattaaatagttaatgtat
570
Q
|||||||||||||| | |||||||||||| |||| |||| |||||||||
T
892562
tattataagcaaaaattcactttttagattcattgaataattaatgtat
892610
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 525 - 585
Target Start/End: Original strand, 3851377 - 3851437
Alignment:
Q
525
tataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata
585
Q
||||||||||| ||||||||||||||||||| ||| | |||||| | ||||||||||||
T
3851377
tataagcaaaaatccactttttagatacattcaattaatgatgtatgtggtctttattata
3851437
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 505 - 573
Target Start/End: Complemental strand, 14751271 - 14751203
Alignment:
Q
505
gtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatcta
573
Q
||||||||| |||||| |||||||||||| | ||||||||| |||||| ||||||| |||||||||
T
14751271
gtactccctccggtcacatttataagcaaaaaacaactttttaggtacattgaatagttgatgtatcta
14751203
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Original strand, 15712125 - 15712165
Alignment:
Q
515
cggtcattattataagcaaaactccactttttagatacatt
555
Q
||||||||| ||||||||||| |||| ||||||||||||||
T
15712125
cggtcattaatataagcaaaaatccattttttagatacatt
15712165
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 506 - 570
Target Start/End: Original strand, 18261595 - 18261659
Alignment:
Q
506
tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtat
570
Q
|||||||| |||||| |||||||||||||| | |||||| ||||| |||| |||| ||||||||
T
18261595
tactccctccggtcactattataagcaaaagttcactttatagattcattcaataaataatgtat
18261659
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Original strand, 35969132 - 35969172
Alignment:
Q
515
cggtcattattataagcaaaactccactttttagatacatt
555
Q
|||||| || ||||||||||| |||||||||||||||||||
T
35969132
cggtcactaatataagcaaaaatccactttttagatacatt
35969172
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 513 - 587
Target Start/End: Complemental strand, 35239791 - 35239717
Alignment:
Q
513
ttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga
587
Q
|||||||| |||||||| ||||| | || ||||||||||||| |||||||||||||||||||||||||||||||
T
35239791
ttcggtcactattataaccaaaatttgacattttagatacattgaatagttaatgtatctagtctttattataga
35239717
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 513 - 586
Target Start/End: Original strand, 50334923 - 50334996
Alignment:
Q
513
ttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattatag
586
Q
|||||| | |||||||| ||||||| ||| ||||||||||||| |||| |||||||||||| ||||||||||||
T
50334923
ttcggttaatattataaacaaaacttcacattttagatacattgaataattaatgtatctaatctttattatag
50334996
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 510 - 557
Target Start/End: Original strand, 38455164 - 38455211
Alignment:
Q
510
cccttcggtcattattataagcaaaactccactttttagatacattaa
557
Q
|||| ||||||||| ||||||||||| |||||||||||||||||||||
T
38455164
ccctccggtcattaatataagcaaaaatccactttttagatacattaa
38455211
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 503 - 585
Target Start/End: Original strand, 32186881 - 32186963
Alignment:
Q
503
aagtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata
585
Q
|||||||| || |||||| | |||||| ||||| | ||||||||| |||||| |||| ||||||||| ||||||||||||||
T
32186881
aagtactctctccggtcactgttataaacaaaatttcactttttaaatacatggaataattaatgtatatagtctttattata
32186963
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 506 - 583
Target Start/End: Original strand, 39964290 - 39964367
Alignment:
Q
506
tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttatta
583
Q
|||||||| ||||||||||||||||||||| | ||||||||||| |||| |||| | |||||| |||||| |||||
T
39964290
tactccctccggtcattattataagcaaaaaactactttttagattcattgaataaattatgtatgtagtctatatta
39964367
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 542 - 593
Target Start/End: Original strand, 30082252 - 30082303
Alignment:
Q
542
tttttagatacattaaatagttaatgtatctagtctttattatagattaaat
593
Q
|||||||||||||| |||| ||||||| | ||||||||||||||||| ||||
T
30082252
tttttagatacattgaataattaatgtttttagtctttattatagatcaaat
30082303
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 522 - 557
Target Start/End: Original strand, 42912352 - 42912387
Alignment:
Q
522
tattataagcaaaactccactttttagatacattaa
557
Q
|||||||||||||||| |||||||||||||||||||
T
42912352
tattataagcaaaacttcactttttagatacattaa
42912387
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 557
Target Start/End: Complemental strand, 52168424 - 52168377
Alignment:
Q
510
cccttcggtcattattataagcaaaactccactttttagatacattaa
557
Q
|||| ||||||||| |||||||||| |||||||||||||||||||||
T
52168424
ccctccggtcattaacataagcaaaaatccactttttagatacattaa
52168377
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 555
Target Start/End: Complemental strand, 39579638 - 39579589
Alignment:
Q
506
tactcccttcggtcattattataagcaaaactccactttttagatacatt
555
Q
||||||||||| ||| |||||||||||||| || ||||||||||| ||||
T
39579638
tactcccttcgatcactattataagcaaaaatcaactttttagattcatt
39579589
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 51617472 - 51617427
Alignment:
Q
510
cccttcggtcattattataagcaaaactccactttttagatacatt
555
Q
|||| |||||| || ||||||||||| |||||||||||||||||||
T
51617472
ccctccggtcactaatataagcaaaattccactttttagatacatt
51617427
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 503 - 555
Target Start/End: Complemental strand, 12745049 - 12744997
Alignment:
Q
503
aagtactcccttcggtcattattataagcaaaactccactttttagatacatt
555
Q
|||||| ||||||||||| |||||||||||||| | || |||||||||||||
T
12745049
aagtacacccttcggtcactattataagcaaaaattaacattttagatacatt
12744997
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 525 - 585
Target Start/End: Original strand, 50260947 - 50261007
Alignment:
Q
525
tataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata
585
Q
||||||||||| ||||||||||||||||||| ||| | |||||| | ||||||||||||
T
50260947
tataagcaaaaatccactttttagatacattcaattaatgatgtatgtggtctttattata
50261007
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 518 - 570
Target Start/End: Original strand, 53711868 - 53711920
Alignment:
Q
518
tcattattataagcaaaactccactttttagatacattaaatagttaatgtat
570
Q
||||||||||||| |||| | ||||||||| |||| ||||||| |||||||||
T
53711868
tcattattataagtaaaatttcactttttaaatactttaaataattaatgtat
53711920
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 14)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 506 - 587
Target Start/End: Complemental strand, 8996898 - 8996817
Alignment:
Q
506
tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga
587
Q
||||| || |||||| ||||||||||||||||| ||||| |||||||||| |||| | ||||||| ||||||||||||||||
T
8996898
tactctctccggtcactattataagcaaaactctactttctagatacattgaataatcaatgtatatagtctttattataga
8996817
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 515 - 573
Target Start/End: Complemental strand, 10495780 - 10495722
Alignment:
Q
515
cggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatcta
573
Q
|||||| |||||||||||||| | ||||||||||||||||| |||| ||||||||||||
T
10495780
cggtcactattataagcaaaatttcactttttagatacattgaatatttaatgtatcta
10495722
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 506 - 566
Target Start/End: Original strand, 43100744 - 43100804
Alignment:
Q
506
tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaat
566
Q
||||||||||||||| |||||||||||||| | || |||||||||||||| |||| |||||
T
43100744
tactcccttcggtcactattataagcaaaaattcattttttagatacattgaataattaat
43100804
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 542 - 585
Target Start/End: Original strand, 8717540 - 8717583
Alignment:
Q
542
tttttagatacattaaatagttaatgtatctagtctttattata
585
Q
||||||||||||||||||| ||||||||| ||||||||||||||
T
8717540
tttttagatacattaaataattaatgtatttagtctttattata
8717583
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 504 - 577
Target Start/End: Original strand, 8996716 - 8996789
Alignment:
Q
504
agtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtct
577
Q
||||||| || || ||| |||||||||||||| | | |||||||||||||| |||| ||||||||||||||||
T
8996716
agtactctctccgatcactattataagcaaaatttcggtttttagatacattgaataattaatgtatctagtct
8996789
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 552 - 599
Target Start/End: Original strand, 39792136 - 39792183
Alignment:
Q
552
cattaaatagttaatgtatctagtctttattatagattaaatatatta
599
Q
||||||||| |||||||||||||| |||||||||||||| ||| ||||
T
39792136
cattaaataattaatgtatctagtttttattatagattagatacatta
39792183
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 548
Target Start/End: Original strand, 23143481 - 23143523
Alignment:
Q
506
tactcccttcggtcattattataagcaaaactccactttttag
548
Q
||||||||||||||| |||||||||||||| || |||||||||
T
23143481
tactcccttcggtcactattataagcaaaaatcaactttttag
23143523
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 548
Target Start/End: Original strand, 23555271 - 23555313
Alignment:
Q
506
tactcccttcggtcattattataagcaaaactccactttttag
548
Q
||||||||||||||| |||||||||||||| || |||||||||
T
23555271
tactcccttcggtcactattataagcaaaaatcaactttttag
23555313
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 458
Target Start/End: Complemental strand, 2908834 - 2908794
Alignment:
Q
417
gaattgagaatatcctcaaaaatactcttccatttccaaact
458
Q
||||||||||||||||| |||||||||||||| |||||||||
T
2908834
gaattgagaatatcctc-aaaatactcttccacttccaaact
2908794
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 524 - 573
Target Start/End: Original strand, 10495701 - 10495749
Alignment:
Q
524
ttataagcaaaactccactttttagatacattaaatagttaatgtatcta
573
Q
|||||||||||||||| ||||||||||||||||||| | ||||||||||
T
10495701
ttataagcaaaactccg-tttttagatacattaaatattcaatgtatcta
10495749
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 582
Target Start/End: Original strand, 41540684 - 41540729
Alignment:
Q
537
tccactttttagatacattaaatagttaatgtatctagtctttatt
582
Q
||||||||||||||| |||||||| ||||| ||||||||||||||
T
41540684
tccactttttagataaattaaataattaatacatctagtctttatt
41540729
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 542 - 598
Target Start/End: Original strand, 13953797 - 13953853
Alignment:
Q
542
tttttagatacattaaatagttaatgtatctagtctttattatagattaaatatatt
598
Q
|||||||||| |||||||| ||| | ||| |||||||||||||| |||| |||||||
T
13953797
tttttagatatattaaataattagtctatatagtctttattataaattagatatatt
13953853
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 542 - 598
Target Start/End: Original strand, 14095004 - 14095060
Alignment:
Q
542
tttttagatacattaaatagttaatgtatctagtctttattatagattaaatatatt
598
Q
|||||||||| |||||||| ||| | ||| |||||||||||||| |||| |||||||
T
14095004
tttttagatatattaaataattagtctatatagtctttattataaattagatatatt
14095060
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 38227198 - 38227238
Alignment:
Q
510
cccttcggtcattattataagcaaaactccactttttagat
550
Q
|||| ||||||||||||||||||||| |||||||||||||
T
38227198
ccctccggtcattattataagcaaaaaaccactttttagat
38227238
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 21)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 506 - 599
Target Start/End: Original strand, 8352130 - 8352223
Alignment:
Q
506
tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattatagattaaatatatta
599
Q
|||||||| ||||| |||||||||||||||| || |||||||||||||| ||| |||||||||||| | ||||||||||| |||||| ||||
T
8352130
tactccctctggtcactattataagcaaaacttcattttttagatacattgaatgattaatgtatctaatatttattatagaataaatacatta
8352223
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 503 - 587
Target Start/End: Original strand, 26468286 - 26468370
Alignment:
Q
503
aagtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga
587
Q
||||||||| |||||||| |||||||| ||||| | ||||||||| ||||||| |||| |||||||||||| | |||||||||||
T
26468286
aagtactccattcggtcactattataaacaaaatttcactttttaaatacattgaataattaatgtatctaatttttattataga
26468370
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 512 - 573
Target Start/End: Complemental strand, 43731258 - 43731197
Alignment:
Q
512
cttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatcta
573
Q
||||||| |||||||||||||||| | || |||||||||||||| |||||||||||||||||
T
43731258
cttcggttattattataagcaaaatttcattttttagatacattgaatagttaatgtatcta
43731197
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 506 - 577
Target Start/End: Original strand, 1409044 - 1409116
Alignment:
Q
506
tactcccttcggtcattattataagcaaaactccactttttagataca-ttaaatagttaatgtatctagtct
577
Q
|||||| |||||||| |||||||||||||| | |||||||||||| || ||||||| |||||||||||||||
T
1409044
tactcctttcggtcactattataagcaaaagttcactttttagattcatttaaataaataatgtatctagtct
1409116
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 517 - 570
Target Start/End: Complemental strand, 8352269 - 8352216
Alignment:
Q
517
gtcattattataagcaaaactccactttttagatacattaaatagttaatgtat
570
Q
||||||||||||||||||||| | ||||||||||| ||| |||| |||||||||
T
8352269
gtcattattataagcaaaacttccctttttagatatattgaataattaatgtat
8352216
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 522 - 587
Target Start/End: Complemental strand, 14773852 - 14773787
Alignment:
Q
522
tattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga
587
Q
|||||||||||||| | |||||||||||| ||| ||| |||||||||||||||| |||||||||
T
14773852
tattataagcaaaatttaactttttagatatattgtataattaatgtatctagtctgtattataga
14773787
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 31008400 - 31008355
Alignment:
Q
510
cccttcggtcattattataagcaaaactccactttttagatacatt
555
Q
|||| ||||||||| ||||||||||| |||||||||||||||||||
T
31008400
ccctccggtcattaatataagcaaaaatccactttttagatacatt
31008355
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 505 - 585
Target Start/End: Original strand, 639793 - 639873
Alignment:
Q
505
gtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata
585
Q
|||| |||| |||||| || ||||||||||| ||||||||||||||||||| ||| | |||||| | ||||||||||||
T
639793
gtacaccctccggtcactaatataagcaaaaatccactttttagatacattcaattaatgatgtatgtggtctttattata
639873
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 503 - 555
Target Start/End: Original strand, 3384215 - 3384267
Alignment:
Q
503
aagtactcccttcggtcattattataagcaaaactccactttttagatacatt
555
Q
|||||| |||| ||||||||| ||||||||||| | |||||||||||||||||
T
3384215
aagtacaccctccggtcattaatataagcaaaaattcactttttagatacatt
3384267
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 585
Target Start/End: Complemental strand, 33604132 - 33604057
Alignment:
Q
510
cccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata
585
Q
|||| |||||| || ||||||||||| ||||||||||||||||||| ||| | |||||| | ||||||||||||
T
33604132
ccctccggtcactaatataagcaaaaatccactttttagatacattcaattaatgatgtatgtggtctttattata
33604057
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 585
Target Start/End: Original strand, 48022594 - 48022669
Alignment:
Q
510
cccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata
585
Q
|||| |||||| || ||||||||||| ||||||||||||||||||| ||| | |||||| | ||||||||||||
T
48022594
ccctccggtcactaatataagcaaaaatccactttttagatacattcaattaatgatgtatgtggtctttattata
48022669
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 571
Target Start/End: Complemental strand, 5368919 - 5368854
Alignment:
Q
506
tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatc
571
Q
|||||||| ||||||| |||||||||||| | ||||||||||| |||| |||| ||||||||||
T
5368919
tactccctccggtcatatttataagcaaaaattaactttttagatgcattgaataattaatgtatc
5368854
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 14418198 - 14418153
Alignment:
Q
510
cccttcggtcattattataagcaaaactccactttttagatacatt
555
Q
|||| ||||||||| ||||||||||| | |||||||||||||||||
T
14418198
ccctccggtcattaatataagcaaaaattcactttttagatacatt
14418153
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 17490487 - 17490532
Alignment:
Q
510
cccttcggtcattattataagcaaaactccactttttagatacatt
555
Q
|||| |||||| || ||||||||||| |||||||||||||||||||
T
17490487
ccctccggtcactaatataagcaaaaatccactttttagatacatt
17490532
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 571
Target Start/End: Complemental strand, 30800342 - 30800289
Alignment:
Q
518
tcattattataagcaaaactccactttttagatacattaaatagttaatgtatc
571
Q
||||| |||||| |||||||| |||||||||||| ||| |||| ||||||||||
T
30800342
tcattgttataaacaaaactctactttttagatatattgaataattaatgtatc
30800289
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 37734914 - 37734869
Alignment:
Q
510
cccttcggtcattattataagcaaaactccactttttagatacatt
555
Q
|||| |||||| || ||||||||||| |||||||||||||||||||
T
37734914
ccctccggtcactaatataagcaaaaatccactttttagatacatt
37734869
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 572
Target Start/End: Original strand, 1609977 - 1610025
Alignment:
Q
524
ttataagcaaaactccactttttagatacattaaatagttaatgtatct
572
Q
|||||||||||| | |||||||||||||||| |||| |||||||||||
T
1609977
ttataagcaaaaaacaactttttagatacattgaataattaatgtatct
1610025
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 525 - 585
Target Start/End: Original strand, 27206773 - 27206833
Alignment:
Q
525
tataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata
585
Q
||||||||||| |||||||||||||||||| ||| | |||||| ||||||||||||||
T
27206773
tataagcaaaaaaccactttttagatacattcaattaatgatgtatgtagtctttattata
27206833
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 548
Target Start/End: Original strand, 29043447 - 29043491
Alignment:
Q
504
agtactcccttcggtcattattataagcaaaactccactttttag
548
Q
|||||||||| || |||||||||||||||||| || |||||||||
T
29043447
agtactccctccgctcattattataagcaaaaatcaactttttag
29043491
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 525 - 577
Target Start/End: Complemental strand, 31635871 - 31635819
Alignment:
Q
525
tataagcaaaactccactttttagatacattaaatagttaatgtatctagtct
577
Q
||||||||||| | ||||||||||||||||| |||| |||| ||||||||||
T
31635871
tataagcaaaatttcactttttagatacattgaataactaatatatctagtct
31635819
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 587
Target Start/End: Original strand, 42761457 - 42761529
Alignment:
Q
515
cggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga
587
Q
||||||||||||||||||||||| || |||||||| |||| ||| | |||||||| |||||||||||||
T
42761457
cggtcattattataagcaaaactttacattttagattcattcaattaatgatgtatctgatctttattataga
42761529
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 506 - 570
Target Start/End: Original strand, 26982759 - 26982823
Alignment:
Q
506
tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtat
570
Q
|||| |||||||||| |||||||||||||||| ||||||||||||||||| |||| |||||||||
T
26982759
tacttccttcggtcactattataagcaaaacttcactttttagatacattgaataattaatgtat
26982823
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 506 - 599
Target Start/End: Original strand, 4132381 - 4132475
Alignment:
Q
506
tactcccttcggtcattattataagcaaaactccactttt-tagatacattaaatagttaatgtatctagtctttattatagattaaatatatta
599
Q
|||||| | |||||| |||||||||||||| | ||||||| |||||||||| |||| ||||||||| |||| ||||||||||| |||||| ||||
T
4132381
tactccatccggtcaatattataagcaaaatttcacttttttagatacattgaataattaatgtatatagtatttattatagactaaatacatta
4132475
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 504 - 575
Target Start/End: Original strand, 21857062 - 21857133
Alignment:
Q
504
agtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagt
575
Q
|||||||||| |||||| |||||||||||||| | |||||||||| ||||| |||| ||||||||||||||
T
21857062
agtactccctccggtcactattataagcaaaagtttactttttagacacattgaataattaatgtatctagt
21857133
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 516 - 577
Target Start/End: Complemental strand, 4132522 - 4132461
Alignment:
Q
516
ggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtct
577
Q
|||||||||||||| ||||||| |||||||||||||||| |||| ||||||||| ||||||
T
4132522
ggtcattattataaacaaaacttaactttttagatacattgaatatttaatgtatttagtct
4132461
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 515 - 573
Target Start/End: Original strand, 21587839 - 21587897
Alignment:
Q
515
cggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatcta
573
Q
|||||| |||||||||||||||| |||||| |||| ||||||||| ||||||||||||
T
21587839
cggtcactattataagcaaaacttcactttcaagatgcattaaataattaatgtatcta
21587897
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 560
Target Start/End: Original strand, 34840609 - 34840663
Alignment:
Q
506
tactcccttcggtcattattataagcaaaactccactttttagatacattaaata
560
Q
|||||||| ||||||||||||||||||||| | |||||||||||| |||| ||||
T
34840609
tactccctccggtcattattataagcaaaagttcactttttagattcattcaata
34840663
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 517 - 587
Target Start/End: Original strand, 41115556 - 41115626
Alignment:
Q
517
gtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga
587
Q
||||| |||||||| |||||| ||||| |||||||||| || | |||||||||||| |||||||||||||
T
41115556
gtcatcattataagtaaaactgtactttgtagatacattgaacaattaatgtatctaatctttattataga
41115626
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 517 - 570
Target Start/End: Complemental strand, 43250473 - 43250420
Alignment:
Q
517
gtcattattataagcaaaactccactttttagatacattaaatagttaatgtat
570
Q
|||| |||||||||||||||| |||||||||||||||| |||| |||||||||
T
43250473
gtcactattataagcaaaactttactttttagatacattgaataattaatgtat
43250420
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 506 - 573
Target Start/End: Complemental strand, 24155702 - 24155635
Alignment:
Q
506
tactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatcta
573
Q
|||||||||| ||| ||| |||| ||||||| || ||||||||||||||||||| ||||| ||||||
T
24155702
tactcccttctatcactatcataaacaaaacttcaatttttagatacattaaataattaatttatcta
24155635
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 587
Target Start/End: Original strand, 38646164 - 38646242
Alignment:
Q
509
tcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattataga
587
Q
||||| |||| | ||||||||| ||||||| |||||||||||||||| |||| ||||| ||| || | ||| |||||||
T
38646164
tccctccggttactattataagtaaaactcaactttttagatacattgaataattaatatatttaatttttgttataga
38646242
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 575
Target Start/End: Complemental strand, 21857222 - 21857162
Alignment:
Q
515
cggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagt
575
Q
|||||| |||||||||||||| | || |||||||| | ||| |||| ||||||||||||||
T
21857222
cggtcactattataagcaaaaattcattttttagacatattgaataattaatgtatctagt
21857162
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Complemental strand, 29498919 - 29498879
Alignment:
Q
515
cggtcattattataagcaaaactccactttttagatacatt
555
Q
||||||||| ||||||||||| |||| ||||||||||||||
T
29498919
cggtcattaatataagcaaaaatccattttttagatacatt
29498879
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 560
Target Start/End: Original strand, 43250374 - 43250418
Alignment:
Q
516
ggtcattattataagcaaaactccactttttagatacattaaata
560
Q
||||| |||||||||||||||| |||||||||||||||| ||||
T
43250374
ggtcactattataagcaaaactttactttttagatacattgaata
43250418
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 505 - 585
Target Start/End: Complemental strand, 45000747 - 45000667
Alignment:
Q
505
gtactcccttcggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttattata
585
Q
|||| ||||||||||| || ||||||||||| | |||||||||| ||||| ||| | | |||||| | ||||||||||||
T
45000747
gtacacccttcggtcactaatataagcaaaaatgtactttttagacacattcaattgatgatgtatgtggtctttattata
45000667
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0155 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0155
Description:
Target: scaffold0155; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 556
Target Start/End: Complemental strand, 34020 - 33970
Alignment:
Q
506
tactcccttcggtcattattataagcaaaactccactttttagatacatta
556
Q
||||| |||| |||||||||| |||||||||| ||||||||||||||||||
T
34020
tactcgcttctgtcattattacaagcaaaacttcactttttagatacatta
33970
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
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