View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0117A8 (Length: 315)

Name: NF0117A8
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0117A8
NF0117A8
[»] chr6 (10 HSPs)
chr6 (11-300)||(10607102-10607392)
chr6 (76-301)||(34716164-34716390)
chr6 (195-300)||(20688999-20689104)
chr6 (195-300)||(19063493-19063598)
chr6 (195-266)||(19070157-19070228)
chr6 (11-54)||(34716392-34716435)
chr6 (245-300)||(29382833-29382888)
chr6 (259-301)||(16249686-16249728)
chr6 (203-239)||(10360398-10360434)
chr6 (260-300)||(20687464-20687504)
[»] chr8 (8 HSPs)
chr8 (11-300)||(42638916-42639208)
chr8 (203-239)||(26777772-26777808)
chr8 (259-300)||(33801499-33801540)
chr8 (259-300)||(33802380-33802421)
chr8 (257-300)||(34364738-34364781)
chr8 (259-300)||(38686303-38686344)
chr8 (259-300)||(39655916-39655957)
chr8 (252-300)||(42638148-42638196)
[»] chr7 (9 HSPs)
chr7 (198-300)||(46813091-46813193)
chr7 (195-300)||(37730719-37730824)
chr7 (195-300)||(42343296-42343401)
chr7 (203-239)||(31276988-31277024)
chr7 (259-301)||(3821391-3821433)
chr7 (259-300)||(34852557-34852598)
chr7 (259-300)||(39987534-39987575)
chr7 (260-300)||(34853342-34853382)
chr7 (260-300)||(42344222-42344262)
[»] chr1 (6 HSPs)
chr1 (200-300)||(51778685-51778784)
chr1 (198-300)||(50353839-50353941)
chr1 (245-300)||(50354989-50355044)
chr1 (259-300)||(38618230-38618271)
chr1 (202-239)||(42309109-42309146)
chr1 (259-300)||(51610228-51610269)
[»] chr3 (4 HSPs)
chr3 (195-301)||(7346184-7346290)
chr3 (195-297)||(35431335-35431440)
chr3 (259-300)||(35432228-35432269)
chr3 (203-239)||(42995617-42995653)
[»] chr5 (5 HSPs)
chr5 (195-300)||(42991340-42991445)
chr5 (195-299)||(32405961-32406064)
chr5 (252-301)||(7495257-7495306)
chr5 (252-300)||(43054376-43054424)
chr5 (259-300)||(42993207-42993248)
[»] chr4 (7 HSPs)
chr4 (195-300)||(55513435-55513540)
chr4 (195-300)||(38134639-38134744)
chr4 (203-238)||(53600241-53600276)
chr4 (251-300)||(53665085-53665134)
chr4 (259-300)||(53664212-53664253)
chr4 (260-301)||(55511901-55511942)
chr4 (260-300)||(45534028-45534068)
[»] scaffold0041 (1 HSPs)
scaffold0041 (200-303)||(10325-10428)
[»] chr2 (6 HSPs)
chr2 (259-300)||(26893482-26893523)
chr2 (259-300)||(26898921-26898962)
chr2 (203-238)||(7075404-7075439)
chr2 (259-300)||(8536893-8536934)
chr2 (252-301)||(26487845-26487894)
chr2 (260-300)||(6852817-6852857)


Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 300
Target Start/End: Original strand, 10607102 - 10607392
Alignment:
Q  11 gaggaggagggcgacaattagttgcaaggtgggtttatgaaaatgggtttcgggttatcctggaaatctgataaagcgcaaattgagcccagcttgaatt 110  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10607102 gaggaggagggcgacaattggttgcaaggtgggtttgtgaaaatgggtttcaggttatcctcgaaatctgataaagcgcaaattgagcccagcttgaatt 10607201  T
Q  111 ataatnnnnnnn-ttacttgtgggcccgtcgtttttgtcacatgcaccgttacaaaaagttaccaagaggttgccgggnnnnnnnttgagtgaatctgaa 209  Q
    |||||        |||||||| ||  | | ||||||||||||||||| ||||||||||||| |||||||||||| |||       |||||||||||| ||    
T  10607202 ataataaaaaaaattacttgttggatcatagtttttgtcacatgcactgttacaaaaagttgccaagaggttgcagggaaaaaaattgagtgaatctaaa 10607301  T
Q  210 ccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatggtgggaaagtattccctctacccaccctaaatgccacc 300  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10607302 ccattcatttaaaataataatatatcaatgcttgaaaatggtactttgtcatggtgggaaagtattccctctacccaccctaaatgccacc 10607392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 76 - 301
Target Start/End: Complemental strand, 34716390 - 34716164
Alignment:
Q  76 atctgataaagcgcaaattgagcccagcttgaattataatnnnnnnn-ttacttgtgggcccgtcgtttttgtcacatgcaccgttacaaaaagttacca 174  Q
    |||| |||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34716390 atctaataaagcgcaaattgagcccagcttgaattataataaaaaaaattacttgtgggcccgtcgtttttgtcacatgcactgttacaaaaagttacca 34716291  T
Q  175 agaggttgccgggnnnnnnnttgagtgaatctgaaccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatggtgggaaagtat 274  Q
    |||||||||||||       |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34716290 agaggttgccgggaaaaaaattgagtcaatctgaaccattcatttaaaataataatatatcaatgcttggaaatagtactttgtcatggtgggaaagtat 34716191  T
Q  275 tccctctacccaccctaaatgccacca 301  Q
    |||||||||||||||||||||||||||    
T  34716190 tccctctacccaccctaaatgccacca 34716164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 195 - 300
Target Start/End: Original strand, 20688999 - 20689104
Alignment:
Q  195 ttgagtgaatctgaaccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatggtgggaaagtattccctctacccaccctaaat 294  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| | | |||||  ||||||||||||| ||||||||||||  |||||||||||||||    
T  20688999 ttgagtggatctgaaccattcatttaaaataataatatatcaatggtagaaaatgaaactttgtcatggtaggaaagtattcctcctacccaccctaaat 20689098  T
Q  295 gccacc 300  Q
    ||||||    
T  20689099 gccacc 20689104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 195 - 300
Target Start/End: Original strand, 19063493 - 19063598
Alignment:
Q  195 ttgagtgaatctgaaccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatggtgggaaagtattccctctacccaccctaaat 294  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| | | |||||| ||||||||||||||||||||| ||||   ||||||||||||||    
T  19063493 ttgagtggatctgaaccattcatttaaaataataatatatcaatggtagaaaatggaactttgtcatggtgggaaagtcttcctcttacccaccctaaat 19063592  T
Q  295 gccacc 300  Q
    | ||||    
T  19063593 ggcacc 19063598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 19070157 - 19070228
Alignment:
Q  195 ttgagtgaatctgaaccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatggtgg 266  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| | | |||||| |||||||||||||||    
T  19070157 ttgagtggatctgaaccattcatttaaaataataatatatcaatggtagaaaatggaactttgtcatggtgg 19070228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 34716435 - 34716392
Alignment:
Q  11 gaggaggagggcgacaattagttgcaaggtgggtttatgaaaat 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  34716435 gaggaggagggcgacaattagttgcaaggtgggtttatgaaaat 34716392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 300
Target Start/End: Original strand, 29382833 - 29382888
Alignment:
Q  245 aaatggtactttgtcatggtgggaaagtattccctctacccaccctaaatgccacc 300  Q
    |||||| ||||||||||||||| ||||| ||||  |||||||||||||||||||||    
T  29382833 aaatggaactttgtcatggtggaaaagtcttcctcctacccaccctaaatgccacc 29382888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 301
Target Start/End: Complemental strand, 16249728 - 16249686
Alignment:
Q  259 catggtgggaaagtattccctctacccaccctaaatgccacca 301  Q
    ||||||||||||||||||| |  ||||||||||||||||||||    
T  16249728 catggtgggaaagtattccattgacccaccctaaatgccacca 16249686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 10360398 - 10360434
Alignment:
Q  203 atctgaaccattcatttaaaataataatatatcaatg 239  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  10360398 atctgaaccattgatttaaaataacaatatatcaatg 10360434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 300
Target Start/End: Complemental strand, 20687504 - 20687464
Alignment:
Q  260 atggtgggaaagtattccctctacccaccctaaatgccacc 300  Q
    ||||||||||||||||||  ||||| |||||||||||||||    
T  20687504 atggtgggaaagtattcctcctacctaccctaaatgccacc 20687464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 168; Significance: 5e-90; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 11 - 300
Target Start/End: Original strand, 42638916 - 42639208
Alignment:
Q  11 gaggaggagggcgacaattagttgcaaggtg--ggtttatgaaaatgggtttcgggttatcctggaaatctgataaagcgcaaattgagcccagcttgaa 108  Q
    ||||||||||||||||||| |||||||||||  ||||| ||||| ||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||    
T  42638916 gaggaggagggcgacaattggttgcaaggtgtgggtttgtgaaattgggtttcgggttatcctgaaaatccgataaagcgtaaattgagcccagcttgaa 42639015  T
Q  109 ttataatnnnnnnn-ttacttgtgggcccgtcgtttttgtcacatgcaccgttacaaaaagttaccaagaggttgccgggnnnnnnnttgagtgaatctg 207  Q
    |||||||        |||||||| ||  | ||||||||||||||||||| ||||||||||||| |||||||||||| |||       ||||||||||||     
T  42639016 ttataataaaaaaaattacttgttggatcatcgtttttgtcacatgcactgttacaaaaagttgccaagaggttgcagggaaaaaaattgagtgaatcta 42639115  T
Q  208 aaccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatggtgggaaagtattccctctacccaccctaaatgccacc 300  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42639116 aaccattcatttaaaataataatatatcaatgcttgaaaatggtactttgtcatggtggaaaagtattccctctacccaccctaaatgccacc 42639208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 26777808 - 26777772
Alignment:
Q  203 atctgaaccattcatttaaaataataatatatcaatg 239  Q
    |||||||||||||||||||||||||||||||||||||    
T  26777808 atctgaaccattcatttaaaataataatatatcaatg 26777772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 33801540 - 33801499
Alignment:
Q  259 catggtgggaaagtattccctctacccaccctaaatgccacc 300  Q
    ||||||||||||| ||||| ||||||||||||||||||||||    
T  33801540 catggtgggaaagaattccttctacccaccctaaatgccacc 33801499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 259 - 300
Target Start/End: Original strand, 33802380 - 33802421
Alignment:
Q  259 catggtgggaaagtattccctctacccaccctaaatgccacc 300  Q
    ||||||||||||| ||||| ||||||||||||||||||||||    
T  33802380 catggtgggaaagaattccttctacccaccctaaatgccacc 33802421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 300
Target Start/End: Complemental strand, 34364781 - 34364738
Alignment:
Q  257 gtcatggtgggaaagtattccctctacccaccctaaatgccacc 300  Q
    ||||||||||||||||||||| |  |||||||||||||||||||    
T  34364781 gtcatggtgggaaagtattccattgacccaccctaaatgccacc 34364738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 38686344 - 38686303
Alignment:
Q  259 catggtgggaaagtattccctctacccaccctaaatgccacc 300  Q
    |||||||| |||| ||||| ||||||||||||||||||||||    
T  38686344 catggtggaaaagaattccttctacccaccctaaatgccacc 38686303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 39655957 - 39655916
Alignment:
Q  259 catggtgggaaagtattccctctacccaccctaaatgccacc 300  Q
    ||||||||||||||||||| |  |||||||||||||||||||    
T  39655957 catggtgggaaagtattccattgacccaccctaaatgccacc 39655916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 300
Target Start/End: Complemental strand, 42638196 - 42638148
Alignment:
Q  252 actttgtcatggtgggaaagtattccctctacccaccctaaatgccacc 300  Q
    ||||| ||||||||| |||| |||||  |||||||||||||||||||||    
T  42638196 actttctcatggtggaaaagaattcctcctacccaccctaaatgccacc 42638148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 198 - 300
Target Start/End: Complemental strand, 46813193 - 46813091
Alignment:
Q  198 agtgaatctgaaccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatggtgggaaagtattccctctacccaccctaaatgcc 297  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||  ||||| |||||||||||||||||||||||||||||||||||| |||||||| |    
T  46813193 agtgaatctaaaccattcatttaaaataataatatatcaatggttataaatgatactttgtcatggtgggaaagtattccctctacccatcctaaatgtc 46813094  T
Q  298 acc 300  Q
    |||    
T  46813093 acc 46813091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 195 - 300
Target Start/End: Complemental strand, 37730824 - 37730719
Alignment:
Q  195 ttgagtgaatctgaaccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatggtgggaaagtattccctctacccaccctaaat 294  Q
    |||||||||||| |||||||  ||||||||||||||||||||||| ||  |||||||||||| | ||||||||||||||||| | |||||||||||  ||    
T  37730824 ttgagtgaatctaaaccattgctttaaaataataatatatcaatgattaaaaatggtacttttttatggtgggaaagtattctccctacccaccctcgat 37730725  T
Q  295 gccacc 300  Q
    ||||||    
T  37730724 gccacc 37730719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 195 - 300
Target Start/End: Complemental strand, 42343401 - 42343296
Alignment:
Q  195 ttgagtgaatctgaaccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatggtgggaaagtattccctctacccaccctaaat 294  Q
    |||| ||||| || |||||||| ||| ||||||| |||||||||| ||  || ||  ||||| ||||||| ||||||||||||  |||||||||||||||    
T  42343401 ttgactgaatttggaccattcacttataataatactatatcaatggtttaaagtgacactttttcatggtaggaaagtattcctcctacccaccctaaat 42343302  T
Q  295 gccacc 300  Q
    ||||||    
T  42343301 gccacc 42343296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 31277024 - 31276988
Alignment:
Q  203 atctgaaccattcatttaaaataataatatatcaatg 239  Q
    ||||||||| |||||||||||||||||||||||||||    
T  31277024 atctgaaccgttcatttaaaataataatatatcaatg 31276988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 301
Target Start/End: Original strand, 3821391 - 3821433
Alignment:
Q  259 catggtgggaaagtattccctctacccaccctaaatgccacca 301  Q
    ||||||||||||||||||| |  ||||||||||||||||||||    
T  3821391 catggtgggaaagtattccattgacccaccctaaatgccacca 3821433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 34852598 - 34852557
Alignment:
Q  259 catggtgggaaagtattccctctacccaccctaaatgccacc 300  Q
    |||||||| |||| ||||| ||||||||||||||||||||||    
T  34852598 catggtggaaaagaattccttctacccaccctaaatgccacc 34852557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 39987575 - 39987534
Alignment:
Q  259 catggtgggaaagtattccctctacccaccctaaatgccacc 300  Q
    ||||||||||||||||||| |  |||||||||||||||||||    
T  39987575 catggtgggaaagtattccattaacccaccctaaatgccacc 39987534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 300
Target Start/End: Original strand, 34853342 - 34853382
Alignment:
Q  260 atggtgggaaagtattccctctacccaccctaaatgccacc 300  Q
    ||||||||||||| ||||  |||||||||||||||||||||    
T  34853342 atggtgggaaagtcttcctcctacccaccctaaatgccacc 34853382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 300
Target Start/End: Original strand, 42344222 - 42344262
Alignment:
Q  260 atggtgggaaagtattccctctacccaccctaaatgccacc 300  Q
    |||||||||||| |||||  |||||||||||||||||||||    
T  42344222 atggtgggaaagaattcctcctacccaccctaaatgccacc 42344262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 200 - 300
Target Start/End: Original strand, 51778685 - 51778784
Alignment:
Q  200 tgaatctgaaccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatggtgggaaagtattccctctacccaccctaaatgccac 299  Q
    ||||||| |||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  51778685 tgaatctaaaccattcatttaaaataataatatatcaatggttataaatggtactttgtcatggtggaaaagta-tccctctacccaccctaaatgccac 51778783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 198 - 300
Target Start/End: Complemental strand, 50353941 - 50353839
Alignment:
Q  198 agtgaatctgaaccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatggtgggaaagtattccctctacccaccctaaatgcc 297  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||  ||||| |||||| ||||||||||||||||||||||||||||| |||||||| |    
T  50353941 agtgaatctaaaccattcatttaaaataataatatatcaatggttataaatgatactttatcatggtgggaaagtattccctctacccatcctaaatgtc 50353842  T
Q  298 acc 300  Q
    |||    
T  50353841 acc 50353839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 300
Target Start/End: Original strand, 50354989 - 50355044
Alignment:
Q  245 aaatggtactttgtcatggtgggaaagtattccctctacccaccctaaatgccacc 300  Q
    |||||| |||||  ||||||||||||| |||||  |||||||||||||||||||||    
T  50354989 aaatggaactttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 50355044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 38618271 - 38618230
Alignment:
Q  259 catggtgggaaagtattccctctacccaccctaaatgccacc 300  Q
    ||||||||||||| |||||  |||||||||||||||||||||    
T  38618271 catggtgggaaagaattcctcctacccaccctaaatgccacc 38618230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 42309109 - 42309146
Alignment:
Q  202 aatctgaaccattcatttaaaataataatatatcaatg 239  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  42309109 aatctgaaccattcacttaaaatattaatatatcaatg 42309146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Original strand, 51610228 - 51610269
Alignment:
Q  259 catggtgggaaagtattccctctacccaccctaaatgccacc 300  Q
    |||||||||||| ||||||  |||||||||||||||||||||    
T  51610228 catggtgggaaaatattcctcctacccaccctaaatgccacc 51610269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 195 - 301
Target Start/End: Complemental strand, 7346290 - 7346184
Alignment:
Q  195 ttgagtgaatctgaaccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatggtgggaaagtattccctctacccaccctaaat 294  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| | | |||||| ||||||||||||||||||||| ||||   ||||||||||||||    
T  7346290 ttgagtggatctgaaccattcatttaaaataataatatatcaatggtagaaaatggaactttgtcatggtgggaaagtcttcctcttacccaccctaaat 7346191  T
Q  295 gccacca 301  Q
    | |||||    
T  7346190 ggcacca 7346184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 195 - 297
Target Start/End: Complemental strand, 35431440 - 35431335
Alignment:
Q  195 ttgagtgaatctgaaccattcatttaaaataataata---tatcaatgcttggaaatggtactttgtcatggtgggaaagtattccctctacccacccta 291  Q
    ||||||| ||||||| |||||||||||||||||||||   |||||||| | | |||||  ||||||||||||||||||||||||||  ||||||||||||    
T  35431440 ttgagtggatctgaatcattcatttaaaataataataatatatcaatgatagaaaatgaaactttgtcatggtgggaaagtattcctcctacccacccta 35431341  T
Q  292 aatgcc 297  Q
    ||||||    
T  35431340 aatgcc 35431335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 259 - 300
Target Start/End: Original strand, 35432228 - 35432269
Alignment:
Q  259 catggtgggaaagtattccctctacccaccctaaatgccacc 300  Q
    ||||||||||||| ||||| ||||||||||||||||||||||    
T  35432228 catggtgggaaagaattccttctacccaccctaaatgccacc 35432269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 42995653 - 42995617
Alignment:
Q  203 atctgaaccattcatttaaaataataatatatcaatg 239  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  42995653 atctgaaccattgatttaaaataacaatatatcaatg 42995617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 195 - 300
Target Start/End: Complemental strand, 42991445 - 42991340
Alignment:
Q  195 ttgagtgaatctgaaccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatggtgggaaagtattccctctacccaccctaaat 294  Q
    |||||||||||| |||||||| ||||||||||||||||||||||| ||  |||||||||||| ||||||| | ||||||||| | |||||||||||||||    
T  42991445 ttgagtgaatctaaaccattcctttaaaataataatatatcaatggttaaaaatggtactttttcatggtagaaaagtattctccctacccaccctaaat 42991346  T
Q  295 gccacc 300  Q
    ||||||    
T  42991345 gccacc 42991340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 195 - 299
Target Start/End: Original strand, 32405961 - 32406064
Alignment:
Q  195 ttgagtgaatctgaaccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatggtgggaaagtattccctctacccaccctaaat 294  Q
    ||||||| ||||||||||||||||||||||||||||||||||| | | | |||| | ||||||||||||| ||||||| ||||   |||||| |||||||    
T  32405961 ttgagtggatctgaaccattcatttaaaataataatatatcaacggtagaaaatagaactttgtcatggtcggaaagtcttcctcttaccca-cctaaat 32406059  T
Q  295 gccac 299  Q
    |||||    
T  32406060 gccac 32406064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 252 - 301
Target Start/End: Original strand, 7495257 - 7495306
Alignment:
Q  252 actttgtcatggtgggaaagtattccctctacccaccctaaatgccacca 301  Q
    ||||| |||||||||||||| |||||| |||||||||||||||| |||||    
T  7495257 actttctcatggtgggaaagaattccccctacccaccctaaatgtcacca 7495306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 43054376 - 43054424
Alignment:
Q  252 actttgtcatggtgggaaagtattccctctacccaccctaaatgccacc 300  Q
    ||||||||||||||||||||| ||||  ||||||||| |||||||||||    
T  43054376 actttgtcatggtgggaaagtcttcctcctacccaccttaaatgccacc 43054424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Original strand, 42993207 - 42993248
Alignment:
Q  259 catggtgggaaagtattccctctacccaccctaaatgccacc 300  Q
    |||||||||| || ||||| ||||||||||||||||||||||    
T  42993207 catggtgggatagaattccttctacccaccctaaatgccacc 42993248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 195 - 300
Target Start/End: Original strand, 55513435 - 55513540
Alignment:
Q  195 ttgagtgaatctgaaccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatggtgggaaagtattccctctacccaccctaaat 294  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| | | |||||  ||||||||||||| ||||||||||||   || |||||||||||    
T  55513435 ttgagtggatctgaaccattcatttaaaataataatatatcaatggtagaaaatgaaactttgtcatggtaggaaagtattcctcatatccaccctaaat 55513534  T
Q  295 gccacc 300  Q
    ||||||    
T  55513535 gccacc 55513540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 195 - 300
Target Start/End: Complemental strand, 38134744 - 38134639
Alignment:
Q  195 ttgagtgaatctgaaccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatggtgggaaagtattccctctacccaccctaaat 294  Q
    |||| ||||||||||||||||| |||||||||||||||||||||| ||  |||| ||||||| ||||| ||||||| ||||| | || |||| |||||||    
T  38134744 ttgattgaatctgaaccattcagttaaaataataatatatcaatggttaaaaatagtactttctcatgatgggaaaatattctccctccccatcctaaat 38134645  T
Q  295 gccacc 300  Q
    ||||||    
T  38134644 gccacc 38134639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 238
Target Start/End: Complemental strand, 53600276 - 53600241
Alignment:
Q  203 atctgaaccattcatttaaaataataatatatcaat 238  Q
    ||||||||||||||||||||||||||||||||||||    
T  53600276 atctgaaccattcatttaaaataataatatatcaat 53600241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 300
Target Start/End: Original strand, 53665085 - 53665134
Alignment:
Q  251 tactttgtcatggtgggaaagtattccctctacccaccctaaatgccacc 300  Q
    |||||| | |||||||||||| ||||| ||||||||||||||||||||||    
T  53665085 tacttttttatggtgggaaagaattccttctacccaccctaaatgccacc 53665134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 53664253 - 53664212
Alignment:
Q  259 catggtgggaaagtattccctctacccaccctaaatgccacc 300  Q
    ||||||||||||| ||||| |||||||||||||||| |||||    
T  53664253 catggtgggaaagaattccttctacccaccctaaataccacc 53664212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 301
Target Start/End: Complemental strand, 55511942 - 55511901
Alignment:
Q  260 atggtgggaaagtattccctctacccaccctaaatgccacca 301  Q
    ||||||||||||||||||  ||||| ||||||||||||||||    
T  55511942 atggtgggaaagtattcctcctacctaccctaaatgccacca 55511901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 300
Target Start/End: Complemental strand, 45534068 - 45534028
Alignment:
Q  260 atggtgggaaagtattccctctacccaccctaaatgccacc 300  Q
    ||||||||||| | ||||| |||||||||||||||||||||    
T  45534068 atggtgggaaaatcttccccctacccaccctaaatgccacc 45534028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 200 - 303
Target Start/End: Original strand, 10325 - 10428
Alignment:
Q  200 tgaatctgaaccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatggtgggaaagtattccctctacccaccctaaatgccac 299  Q
    ||||||||||||||||| |||||||||||||||||||||| ||  |||||||||| | ||||  ||||||||||||| | ||  ||| ||||||||||||    
T  10325 tgaatctgaaccattcagttaaaataataatatatcaatgattaaaaatggtactatctcataatgggaaagtattctccctgtccatcctaaatgccac 10424  T
Q  300 cagt 303  Q
    ||||    
T  10425 cagt 10428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 26893523 - 26893482
Alignment:
Q  259 catggtgggaaagtattccctctacccaccctaaatgccacc 300  Q
    ||||||||||||| ||||| ||||||||||||||||||||||    
T  26893523 catggtgggaaagaattccttctacccaccctaaatgccacc 26893482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 26898962 - 26898921
Alignment:
Q  259 catggtgggaaagtattccctctacccaccctaaatgccacc 300  Q
    ||||||||||||| ||||| ||||||||||||||||||||||    
T  26898962 catggtgggaaagaattccttctacccaccctaaatgccacc 26898921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 238
Target Start/End: Original strand, 7075404 - 7075439
Alignment:
Q  203 atctgaaccattcatttaaaataataatatatcaat 238  Q
    ||||||||| ||||||||||||||||||||||||||    
T  7075404 atctgaaccgttcatttaaaataataatatatcaat 7075439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Original strand, 8536893 - 8536934
Alignment:
Q  259 catggtgggaaagtattccctctacccaccctaaatgccacc 300  Q
    |||||| |||||| ||||| ||||||||||||||||||||||    
T  8536893 catggtaggaaagaattccttctacccaccctaaatgccacc 8536934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 301
Target Start/End: Original strand, 26487845 - 26487894
Alignment:
Q  252 actttgtcatggtgggaaagtattccctctacccaccctaaatgccacca 301  Q
    ||||| ||||||| |||||| |||||  ||||||||||||||||||||||    
T  26487845 actttctcatggtaggaaagaattcctcctacccaccctaaatgccacca 26487894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 300
Target Start/End: Original strand, 6852817 - 6852857
Alignment:
Q  260 atggtgggaaagtattccctctacccaccctaaatgccacc 300  Q
    |||||||||||| |||||  |||||||||||||||||||||    
T  6852817 atggtgggaaagaattcctcctacccaccctaaatgccacc 6852857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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