View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117E11 (Length: 213)
Name: NF0117E11
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117E11 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 7 - 209
Target Start/End: Complemental strand, 16542871 - 16542662
Alignment:
| Q |
7 |
atcataagattgccttgtacaatatttttggttgcgtccctgctaaggtattagatgagattctacatagtgtggaagaatgtgctagacaaatggttgc |
106 |
Q |
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| T |
16542871 |
atcataagactgccttgtacaatatttttggttgcgtccctcctaacgtattagatgagattctacatagtgtggaagaatgtgctagacaaatggttgc |
16542772 |
T |
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| Q |
107 |
ga-------tgaaagttgtgacatattggagatggatctatgggtttatgttaccacaagaccaataaattgaagaggaagaagatgataatagtcaaag |
199 |
Q |
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| T |
16542771 |
gaataaagatgaaagttgtgacatattggagatggatctatgggtttatgttaccacaagaccaataaattgaagaggaagaagatgataatagtcaaag |
16542672 |
T |
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| Q |
200 |
acagctaatt |
209 |
Q |
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||||| |||| |
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| T |
16542671 |
acagccaatt |
16542662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 107 - 209
Target Start/End: Complemental strand, 16533943 - 16533841
Alignment:
| Q |
107 |
gatgaaagttgtgacatattggagatggatctatgggtttatgttaccacaagaccaataaattgaagaggaagaagatgataatagtcaaagacagcta |
206 |
Q |
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| T |
16533943 |
gatgaaagttgtgacatattggagatggatctatgggtttatgttaccacaagaccaataaattgaagaggaagaagatgataatagtcaaagacagcca |
16533844 |
T |
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| Q |
207 |
att |
209 |
Q |
| |
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||| |
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| T |
16533843 |
att |
16533841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 16537158 - 16537072
Alignment:
| Q |
7 |
atcataagattgccttgtacaatatttttggttgcgtccctgctaaggtattagatgagattctacatagtgtggaagaatgtgcta |
93 |
Q |
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||||||| | ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
16537158 |
atcataaaactgccttgtacaatatttttggttgcgtccctactaacgtattagatgagattctacatagtgtggaagaatgcgcta |
16537072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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