View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117E13 (Length: 430)
Name: NF0117E13
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117E13 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 8 - 423
Target Start/End: Original strand, 10192495 - 10192910
Alignment:
| Q |
8 |
ccacggctattccaaactaaaatagtgagaacagatatgtaaaatacagaaaaagaaatgtaaaacagatttgggcatatatcaatatcaacaatacatt |
107 |
Q |
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|||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10192495 |
ccacagctataccaaactaaaatagagagaacagatatgtaaaatacagaaaaagaaatgtaaaacagatttgggcatatatcaatatcaacaatacatt |
10192594 |
T |
|
| Q |
108 |
atccccacaatatcctttagaacattaatcaagaaccaggaagatcaacatgggcatgtgaaggaactcttagcaaccaagctaccaacattagtagggt |
207 |
Q |
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| T |
10192595 |
atccccacaatatcctttagaacattaatcaagaaccaggaagatctacatggacatgtgaaggaactcttagcaaccaagctaccaacattagtagggt |
10192694 |
T |
|
| Q |
208 |
aacaaattatgtcagcagaatcagtactaaaggagaagtggctaataagaacaaggcgaagaggatttgatctatttcagaaggaggaactctgcttcac |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10192695 |
aacaaattatgtcagcagaatcagtactaaaggagaagtggctaataagaacaaggcgaagaggatttgatctatttcagaaggaggaactctgcttcac |
10192794 |
T |
|
| Q |
308 |
ttgtgatnnnnnnnttcacaccttcacatgtttgtaaaacatttcatggtgatgattgtgaaggaagaatttgagggagtagaannnnnnnagctagagc |
407 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
10192795 |
ttgtgataaaaaaattcacaccttcacatgtttgtaaaacatttcatggtgatgattgtgaaggaagaattcgagggagtagaagggggggagctagagc |
10192894 |
T |
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| Q |
408 |
aaaatgaaggagttga |
423 |
Q |
| |
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| T |
10192895 |
aaaatgaaggagttga |
10192910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 137 - 293
Target Start/End: Complemental strand, 19460969 - 19460816
Alignment:
| Q |
137 |
caagaaccaggaagatcaacatgggcatgtgaaggaactcttagcaaccaagctaccaacattagtagggtaacaaattatgtcagcagaatcagtacta |
236 |
Q |
| |
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||||||||||||||||| ||| | ||||||||||||||| |||||||||||||||||||| | ||||||||||||| ||||| |||||||||| || |
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| T |
19460969 |
caagaaccaggaagatctacacagagatgtgaaggaactctccgcaaccaagctaccaacattggcagggtaacaaattctgtcaatagaatcagtaata |
19460870 |
T |
|
| Q |
237 |
aaggagaagtggctaataagaacaaggcgaagaggatttgatctatttcagaaggag |
293 |
Q |
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| | ||||| || |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
19460869 |
a---ataagtgactgataagaacaaggggaagaggatttgatctatttcagaaggag |
19460816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 19461156 - 19461064
Alignment:
| Q |
8 |
ccacggctattccaaactaaaatagtgagaacagatatgtaaaatacagaaaaagaaatgtaaaacagatttgggcatatatcaatatcaaca |
100 |
Q |
| |
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|||| ||||| | |||||||||||| ||||| | | ||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
19461156 |
ccacagctatcctaaactaaaatagagagaaaataaatgtaaaatacaggaaaagaaatgtaaaacagatttgttcatacatcaatatcaaca |
19461064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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