View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0117E14 (Length: 675)

Name: NF0117E14
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0117E14
NF0117E14
[»] chr4 (2 HSPs)
chr4 (4-658)||(10144129-10144787)
chr4 (178-293)||(10135316-10135428)


Alignment Details
Target: chr4 (Bit Score: 523; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 4 - 658
Target Start/End: Complemental strand, 10144787 - 10144129
Alignment:
Q  4 caattaataagggatagttattgacacaaaggacaggtatatatacatatannnnnnnn---gaataagcaaaggagtgaaggacaaatatatgtaacta 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| || |            |||||| |||||||||||||||||||||||||||||||    
T  10144787 caattgataagggatagttattgacacaaaggacaggtatatatatatttttttttttttttgaataaacaaaggagtgaaggacaaatatatgtaacta 10144688  T
Q  101 atcaaatataacatcgaaaaattaaatattgctcaacaactttatattagaaattaaattgaaccaactaactttcaaggggaggggtcagttattaact 200  Q
    | |||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10144687 accaaatataacattgaaaaattaaatatagctcaacaactt-atattagaaattaaattgaaccaactaactttcaaggggaggggtcagttattaact 10144589  T
Q  201 caaatattgaaaatagaa--gtaaacaacaaactatttactcaattcactaccggaaaacaatcttctaaaatgcataggagtatgggacctgtgctgag 298  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10144588 caaatattgaaaatagaaaagtaaacaacaaactatttactcaattcactaccggaaaacaatcttctaaaatgcataggagtatgggacttgtgctgag 10144489  T
Q  299 tatgaaagtgcgataaaatcggctgatatgaagtctttctttccttttcccatatattcgatttttatatcgagtctaactcatcctcgcataatcagtg 398  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||   ||||||||||||||||| ||||||||||||||||| |||    
T  10144488 tatgaaagtgcgataaaatcggctgatatgaagtctttcttttcttttcctatatattgagtttttatatcgagtctatctcatcctcgcataatcggtg 10144389  T
Q  399 tgtaaagtgagaagtgtcactctttctttaaaatgaataggttctgataccaatattaggtttataaaacttgtgcttgctattgcataatcgtgagaca 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10144388 tgtaaagtgagaagtgtcactctttctttaaaatgaataggttctgatatcaatattaggtttataaaacttgtgcttgctattgcataattgtgagaca 10144289  T
Q  499 cttcgaccgatcaattacttttaagaatgggaacgtcagacttatccatatttggatatgtttcgcacaaaatccttgcacaaggcttgtaagggtgaag 598  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10144288 cttcgaccgatcaattacttttaaggatgggaacgtcagacttatccatatttggatatgtttcgcacaaaatccttgcacaaggcttgtaagggtgaag 10144189  T
Q  599 tgattaagtttttctgatgagaatgatttggcatagtcgcctcttaggtttatatttctt 658  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10144188 tgattaagtttttctgatgagaatgatttggcatggtcgcctcttaggtttatatttctt 10144129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 178 - 293
Target Start/End: Complemental strand, 10135428 - 10135316
Alignment:
Q  178 aggggaggggtcagttattaactcaaatattgaaaatagaagtaaacaacaaactatttactcaattcactaccggaaaacaatcttctaaaatgcatag 277  Q
    ||||| ||||||||||||| ||||||||   || ||||||||||||||||||||||||||||||||||||||| |||   |||| ||||||||||||       
T  10135428 aggggtggggtcagttattgactcaaat---gagaatagaagtaaacaacaaactatttactcaattcactacaggattgcaatattctaaaatgcacta 10135332  T
Q  278 gagtatgggacctgtg 293  Q
    || |||||||||||||    
T  10135331 gaatatgggacctgtg 10135316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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