View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117E17 (Length: 514)
Name: NF0117E17
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117E17 |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 8 - 474
Target Start/End: Original strand, 7562843 - 7563312
Alignment:
| Q |
8 |
cccccaatggatccggaaattcaccaactccggtagcgggacgtcctccaccagcctccaatagatccggaaattcacaatcacctccacacaaatcacc |
107 |
Q |
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| T |
7562843 |
cccccaatggatccggaaattcaccaactccggtagcgggacgtcctccaccagcctccaatagatctggaaattcacaatcacctccacacaaatcacc |
7562942 |
T |
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| Q |
108 |
aactacgccaactggacactcaaatggtaatcacaa---caataacaataacaataacaatgatgatgccactaaggcaatagttggagtagtgattggg |
204 |
Q |
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| T |
7562943 |
aactacgccaactggacactcaaatggtaatcacaacaacaataacaataacaataacaatgatgatgccactaaggcaatagttggagtagtgattggg |
7563042 |
T |
|
| Q |
205 |
gtggcagttgctcttatcattttggtcatcgcttgctttgtctgctgcaggaagaagaaaagaaagtactattatggagaacgcccacctcctggaaaag |
304 |
Q |
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| T |
7563043 |
gtggcagttgctcttatcattttggtcatcgcttgctttgtctgctgcaggaagaagaaaagaaagtactattatggagaacgcccacctcctggaaaag |
7563142 |
T |
|
| Q |
305 |
gtgccaaaatcacaaccttcgtaatttttctttatatataggtgtcatgtatatatttattattaattgaagtggcactgccatttcacaacctcccttg |
404 |
Q |
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|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7563143 |
gtgccaaaatcataattttcgtaatttttctttatatataggtgtcatgtatatatttattattaattgaagtggcactgccatttcacaacctcccttg |
7563242 |
T |
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| Q |
405 |
ggagaattgaactatgccccctgagattacaagtcaaacttttaccattgaatttataatacacacccaa |
474 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7563243 |
ggagaattgaactacgccccttgagattacaagtcaaacttttaccattgaacttataatacacacccaa |
7563312 |
T |
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