View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0117E19 (Length: 616)
Name: NF0117E19
Description: NF0117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0117E19 |
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Alignment Details
Target: chr8 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 10 - 613
Target Start/End: Complemental strand, 8277271 - 8276661
Alignment:
| Q |
10 |
acttcccaatggagtcatttctgtgccaacatctttgtgtttaacttcatgaatcacttctgtgtaagattcatgcattgcctcacaagcttgatttctg |
109 |
Q |
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| T |
8277271 |
acttcctaatggagtcatttctgtgccaacatctttgtgtttaacttcatgaatcacttctgtgtaagattcatgcattgcctcacaagcttgatttctg |
8277172 |
T |
|
| Q |
110 |
aataagaatccttcttttgttggttctgaataccggaattttggtaaaatcggctctatgctgtctgtgtacttatctgcagtgtaaaccagttgttgaa |
209 |
Q |
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| T |
8277171 |
aataagaatccttcttttgttggttctgaataccggaattttggtaaaattggctctatgctgtctgtgtacttatctgcagtgtaaaccagttgttgaa |
8277072 |
T |
|
| Q |
210 |
ttaataaaatttgaaatgtggtacattgtatatcaaggattgtggattgcaatacagctgattattgtgatacacaatattatttacatcattcaagagg |
309 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8277071 |
ttaataaaatttgaaatgtgatacattgtatatcaaggattgtggattgcaatacagctgattattgtgatacacaacattatttacatcattcaagagg |
8276972 |
T |
|
| Q |
310 |
gttttaaataaagtcgccaccgcaatatgggctggcaacacaagtgcg------attgaggccacatccagtgtgattctctgcaatatcaaagattgtg |
403 |
Q |
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| T |
8276971 |
gttttaaataaagtcgccacctcaatatgggctggcaacacaagtgcgattgcgattgaggccacatccggtgtgattctctgcaatatcaaagattgtg |
8276872 |
T |
|
| Q |
404 |
acacgaccgcaaccantatcgtgactgcgttaaaaccttgtcattaaatggccaaatagcaagaggaagttgggttctcttccaattttcattctgggct |
503 |
Q |
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| T |
8276871 |
acacgaccgcaaccattatcgtgactgtgttaaaaccttgtcattaaatggccaaatagcaagaggaagttgggttctcttccaattttcattatgggct |
8276772 |
T |
|
| Q |
504 |
agt-aaagacactaacaatctgactcaacagctcgaaatctatgaatcatgaacacaagcacgaactcnagacccaacactactaatgatacgaacacac |
602 |
Q |
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||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||| ||||||| |||||||||||||||| |
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| T |
8276771 |
agtgccagacactaacaatctgactcaaaagctcgaaatctatgaatcatgaacacaaacacgaactcaagacccgacactaccaatgatacgaacacac |
8276672 |
T |
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| Q |
603 |
cgacacaattg |
613 |
Q |
| |
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||||||||||| |
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| T |
8276671 |
cgacacaattg |
8276661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 407
Target Start/End: Complemental strand, 988468 - 988437
Alignment:
| Q |
376 |
gtgattctctgcaatatcaaagattgtgacac |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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|
| T |
988468 |
gtgattctctgcaatatcaaagattgtgacac |
988437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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